TCONS_00040399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040399
Unique NameTCONS_00040399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040399 ID=TCONS_00040399|Name=TCONS_00040399|organism=Clytia hemisphaerica|type=transcript|length=1036bp
cAGAGAAATGAgttacaaaaaaagaaaaaagaagaaatgggACAAAAGTT
TTTCAGACTTATTTCTGGACTGCGATCCGATCCTTGAACAGCTCAGTAAA
GAAGATCAAAGGTGTTTGAGTGCGAAAACTTTAAAAGCAATTGAagattg
gaaaaagaaaaacaataaAGAAACATCGAGTGGTGAGAACTGTGCTACGT
CAAGTGGAAATAAAGATATAAGCAAGGGAACATCAAGTCGTAGCAACAGT
GTTGTATCAAGTGAACGTATAGACATAAGGAAACAATCACCTGAATTCGT
TAGAATCGAGAAGAGACGAACAGTAGCAAAAGCCAAAAAACAAGAAGATG
TTTGCAAAATATACAGGAAACCAGCTTCAAATAAGAACAAGaatcGTGAA
AACTTTGCTCGAAGAATGTCAAGTGAACCTATACAAGATTTAGGGATTCA
AAGCAACGAAGTCCAGCACATGGTGACATTAAATGAAGATTTACCCAGTC
GTGATGAGCCAATGCCCGAAGATACCTCATTTCAACATCATGAGatgtCG
ATAAAACAAGACGTGTCGTTTGGATACGAAATCGAAATTAGAAGGCACAA
GGCACTCATTTCAATTGACAAATATTTCACAAGAGTTGTCGTTCCTGATT
ACGATGTTGAAAATTCCCGCTTAAAAAAACGTAAATATGTTATTGTTAGT
CGGACCTGCTGTTCAGATGATGGTGGAAATTCAGTACGTTGGTTGTTTGG
GTGTAGTTGTGATGAAGCCGAATTTGATCTTGTCAATGCTTTGAATTTCG
ATGCAGGACACACGCAAACTGAAGATAGTAAGAAGTTAATTACTTCCACC
AGCTCTCACGAGATACTCGAAAGTGAATTTGATTTGAACTTATTTTcgtg
gaattttcaaaataggaAATTAGCTTATGTTTAGCCGTGCAAACCTTtgt
gagcagaaactttcacgaggTCGAAAAATAGCGAGATTTACGACATTTAT
AGGATTAAAATGAGAACTTTTTGGACAAAAACCGGC
Run BLAST on NCBI

transcript from alignment at sc0002413:6869..9288+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040399 ID=TCONS_00040399|Name=TCONS_00040399|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at sc0002413:6869..9288+ (Clytia hemisphaerica)
cAGAGAAATGAgttacaaaaaaagaaaaaagaagaaatgggACAAAAGTT
TTTCAGACTTATTTCTGGACTGCGATCCGATCCTTGAACAGCTCAGTAAA
GAAGATCAAAGGTGTTTGAGTGCGAAAACTTTAAAAGCAATTGAagattg
gaaaaagaaaaacaagtaaGCCTAAAACTTGTTAATCACAGTGTAAGTAA
ATGACAGGATACGTTTTAGAACAGTGAATAGGAACAATTAACAATGACAT
TGATATACTGGAACCAGTAATTGTAATGTGCATTctatttccaatatttt
ttatttagtaaAGAAACATCGAGTGGTGAGAACTGTGCTACGTCAAGTGG
AAATAAAGATATAAGGTATGTTAAAAAACCTCTTAAGTAACAACGAGAAT
TTGGCATTTATTTCTATAATTTCTATCTGACACCAACTACAATTCTTCTA
TCTACACTTTTAGCAAGGGAACATCAAGTCGTAGCAACAGTGTTGTATCA
AGTGAACGTATAGACATAAGGTATGTTTATGTGATAATTTATGcctgcaa
aatatttcaaagaaaaaggaaagttcAAGGGAATGAAGTATAACGTTTGT
AATTTATATTTACCTTGTAAAGGAAACAATCACCTGAATTCGTTAGAATC
GAGAAGAGACGAACAGTAGCAAAAGCCAAAAAACAAGAAGATGTTTGCAA
AATATACAGGAAACCAGCTTCAAATAAGAACAAGGTATTACTTCgtatat
atattatttttgattcaaaaagtaaaataacATGATTATCAATAGTCTAA
ATAATAACAACAAGGGGACGCTGCAGACcaattcaatatttttacagaat
cGTGAAAACTTTGCTCGAAGAATGTCAAGTGAACCTATACAAGATTTAGG
GATTCAAAGCAACGAAGTCCAGGTAGGCTTTTAATACTACGGTTATTCGT
TATTTTTAGGATTTGACCTAAACGCTGAGCCTGCCCACTTTTGGTTTAGG
GTGggtatttctttaatttttcagatTATGCGCAACCggttcaagttttt
tttatctaagagttttacaagaacatttTGCATGCAAACCGCATGTTTGA
CTTTNTTATCTAAGagttttacaagaacatttTGCATGCAAACCGCATGT
TTGAATTTTAACAGTATTGAGACTTCTTTTGAACTTTCGCCTattaataa
aattcaaattatataGCACATGGTGACATTAAATGAAGATTTACCCAGTC
GTGATGAGCCAATGCCCGAAGATACCTCATTTCAACATCATGAGGTTAGC
CAGGTTTCAGTTGTATTTCTAtgcgaaatttcaaattttttctttgatac
tgattttctaaggtATGGTATGATTTTCTAAGgtatgaaattttaaatga
atttcctaaggggggatTAGCACTTCAgggggtcctcttacctaaggggg
gtaTTGACCCCTCAAGAAACTATGTAATTACATAACATTATTTCCGTATT
TGAAGTATCTGTATTTGAATTCTTAGGTTGGAATAGAGATCAGAGAAAAT
AATGATGGCTCGTGTCAGGTCAGAAATTTTGGATATAAAGAATTATCCTT
TTCAGCTTGGTAAAATTTTCGCgataattttttattctatGGCAAGTGAa
taactttcacaaaaatattttttagatgtCGATAAAACAAGACGTGTCGT
TTGGATACGAAATCGAAATTAGAAGGCACAAGGCACTCATTTCAATTGAC
AAATATTTCACAAGAGTTGTCGTTCCTGATTACGATGTTGAAAATTCCCG
CTTAAAAGTAATTCTAATCCTTGaacttgataaaaaaaaaacgttgcAAA
CATCTGCTTTTTTTCTTCTGTTGAACAATCATGTTTAACACAAAGCTACA
TTGACTtttactttcttcttttcatccttaTGCCTATTTAAGtatgattt
gatttttatactGTGTATACATTTTATTGATGTTTCCCGATGTTTTTGGG
ACGTTGTTCTGGGAGTTATCTAAATATGAaataaaccaatttttttttaa
atatttccagAAACGTAAATATGTTATTGTTAGTCGGACCTGCTGTTCAG
ATGATGGTGGAAATTCAGTACGTTGGTTGTTTGGGTGTAGTTGTGATGAA
GCCGAATTTGATCTTGTCAATGCTTTGAATTTCGATGCAGGACACACGCA
AACTGAAGATAGTAAGAAGTTAATTACTTCCACCAGCTCTCACGAGATAC
TCGAAAGTGAATTTGATTTGAACTTATTTTcgtggaattttcaaaatagg
aAATTAGCTTATGTTTAGCCGTGCAAACCTTtgtgagcagaaactttcac
gaggTCGAAAAATAGCGAGATTTACGACATTTATAGGATTAAAATGAGAA
CTTTTTGGACAAAAACCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024551XLOC_024551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040399-exon-sc0002413-1491911889:6869..7033TCONS_00040399-exon-sc0002413-1491911889:6869..7033Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:6869..7033TCONS_00040399-exon-sc0002413-1510915933:6869..7033Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:6869..7033TCONS_00040399-exon-sc0002413-1575043694:6869..7033Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1491911889:7177..7233TCONS_00040399-exon-sc0002413-1491911889:7177..7233Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:7177..7233TCONS_00040399-exon-sc0002413-1510915933:7177..7233Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:7177..7233TCONS_00040399-exon-sc0002413-1575043694:7177..7233Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1491911889:7332..7388TCONS_00040399-exon-sc0002413-1491911889:7332..7388Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:7332..7388TCONS_00040399-exon-sc0002413-1510915933:7332..7388Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:7332..7388TCONS_00040399-exon-sc0002413-1575043694:7332..7388Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1491911889:7491..7602TCONS_00040399-exon-sc0002413-1491911889:7491..7602Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:7491..7602TCONS_00040399-exon-sc0002413-1510915933:7491..7602Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:7491..7602TCONS_00040399-exon-sc0002413-1575043694:7491..7602Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1491911889:7716..7790TCONS_00040399-exon-sc0002413-1491911889:7716..7790Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:7716..7790TCONS_00040399-exon-sc0002413-1510915933:7716..7790Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:7716..7790TCONS_00040399-exon-sc0002413-1575043694:7716..7790Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1491911889:8085..8162TCONS_00040399-exon-sc0002413-1491911889:8085..8162Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:8085..8162TCONS_00040399-exon-sc0002413-1510915933:8085..8162Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:8085..8162TCONS_00040399-exon-sc0002413-1575043694:8085..8162Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1491911889:8544..8675TCONS_00040399-exon-sc0002413-1491911889:8544..8675Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:8544..8675TCONS_00040399-exon-sc0002413-1510915933:8544..8675Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:8544..8675TCONS_00040399-exon-sc0002413-1575043694:8544..8675Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1491911889:8929..9288TCONS_00040399-exon-sc0002413-1491911889:8929..9288Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1510915933:8929..9288TCONS_00040399-exon-sc0002413-1510915933:8929..9288Clytia hemisphaericaexon
TCONS_00040399-exon-sc0002413-1575043694:8929..9288TCONS_00040399-exon-sc0002413-1575043694:8929..9288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002413supercontigsc0002413:6869..9288 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.067061	0	0	0.830324	1.37267	1.57154	3.95242	1.24647	2.82407	3.92339	1.89247	2.55713	1.43184	1.03327	0.411857	1.81212	2.28488	1.05497	2.28576	2.06611	2.89619	1.96539	1.42031	1.85469	2.26936	2.71077	1.47593	0.745132	0.455188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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