TCONS_00040393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040393
Unique NameTCONS_00040393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040393 ID=TCONS_00040393|Name=TCONS_00040393|organism=Clytia hemisphaerica|type=transcript|length=1534bp
AGTTAAAGATTGTattgagtttttgtttttaagaatgtttcaaaaatgtt
ttttagaaCATTTAACTGCAGAGTCGTTGTGTTGTCCAGTGTTATTAAAG
GTAGGTAAACAGAAATATACAGACAGAAAGCCCACCCTGCGCAAGTTGAT
AGTCCGGGGCTAGATATTTGATAATTCTAACACATGGCAAGTATATACTC
GCATCGAAAATGTATAAATTAAGATATAGCTAACTATTTCTCGTACGATC
TATATTGGACGATTAACAGGATCTTAGGACGTCTGTGTTTATTGTGTTGT
ATTTgtatatttcttaaaaatccAGTCGCTTGATGTGCAAGTTTGTTGTT
TGTCAATGTTGTGAGTTGATGATGTTTTGCTTCCCAGGATAAACCATTGG
ACAGGGTAAGTTTTACAGCAGGGACTACCATCTCGTAGGATCTATTTTAG
AAAGATAAAAAAGCACGATGGAAAGGACAACTGAGACTTTCTACAAACTG
ATCAAGTCTGACAGGGAACAACAAACCCCTTGTCCTCGAAGTGGACATTG
TATGGCGAAAAACAAAAACCATGTTTATATATTTGGTGGATTTGATGAGC
CTAGTAAAACGTTTCGTGATTTGTGGCGATACAATACAGCAACAAAAACA
TGGTGCAAAATGCCAGATCTGCTGGACGAAGCTCCACAAACCAGCGTTTC
AAGCTCAATGGTATTGGTTAACAACAACTTATTCGTTTTTGGTGGAACAT
CTTTTCCCTTTTCCAAACAAAACTCAAATGAACTGTTTTTATATGACTTG
ACTAAACAACGTTGGTTCAATTTTAGTCAAGCTTTAACCACGAATAGTCG
GCATCTCCAAAGTCAGAATCACAATATAGTCATAAAGACATGTGGATGTA
AGGAAATTTATGATTCAAAACCAATATCTAAATACGGTCAATCAATGGTG
GTAACACCAGACCATGGTATTTTTATATACTCCGGAACTCTTGGAACAGA
ATACACAGATGAGTTACATATTTTCAATTTGGAGACTTTTCGTTGGGTCG
AgtataaattttgtttgaaacatGGTATTGATAGTCAAGGTCGATATAAA
TCTGAAGCTATCGTACATGAAGACCGAATATATCTTTTTGGTGGATCAAA
TTCAGAACATTATTCAAGTTTCGATACAATAGATACGTTTGATTTAGTAA
CCCATTCATGGGAGAAAGTAACCACTATATCAACAGAACTCGATAAAGAC
AAACAGTATGTTTACCCAGAACCAAGGAAAGCTCATAGCTGTGTAAAGTA
TGGTGACAATGTTTATCTAATGGGTGGAATGCGCTCAATAGTGGTCAACG
GTGGTAAAACAACCAACAGACTCTTCAATGATGTTtggattttgagtttg
aaaagTAAAGCATGGTCAAAAATATCAGAGGTCAGTTAAAATCGTTTTTA
AAGGGGGAGTCAAACGTTTTATAGTCATAAAGCTTTACTCTAGACTGGCG
GCAGAGGTAGTGGATTTTGTAACTTCTTACACCC
Run BLAST on NCBI

protein sequence of TCONS_00040393-protein

>TCONS_00040393-protein ID=TCONS_00040393-protein|Name=TCONS_00040393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MERTTETFYKLIKSDREQQTPCPRSGHCMAKNKNHVYIFGGFDEPSKTFR
DLWRYNTATKTWCKMPDLLDEAPQTSVSSSMVLVNNNLFVFGGTSFPFSK
QNSNELFLYDLTKQRWFNFSQALTTNSRHLQSQNHNIVIKTCGCKEIYDS
KPISKYGQSMVVTPDHGIFIYSGTLGTEYTDELHIFNLETFRWVEYKFCL
KHGIDSQGRYKSEAIVHEDRIYLFGGSNSEHYSSFDTIDTFDLVTHSWEK
VTTISTELDKDKQYVYPEPRKAHSCVKYGDNVYLMGGMRSIVVNGGKTTN
RLFNDVWILSLKSKAWSKISEVS
Run BLAST on NCBI

transcript from alignment at sc0002412:12318..13851

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040393 ID=TCONS_00040393|Name=TCONS_00040393|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at sc0002412:12318..13851 (Clytia hemisphaerica)
GGGTGTAAGAAGTTACAAAATCCACTACCTCTGCCGCCAGTCTAGAGTAA
AGCTTTATGACTATAAAACGTTTGACTCCCCCTTTAAAAACGATTTTAAC
TGACCTCTGATATTTTTGACCATGCTTTActtttcaaactcaaaatccaA
ACATCATTGAAGAGTCTGTTGGTTGTTTTACCACCGTTGACCACTATTGA
GCGCATTCCACCCATTAGATAAACATTGTCACCATACTTTACACAGCTAT
GAGCTTTCCTTGGTTCTGGGTAAACATACTGTTTGTCTTTATCGAGTTCT
GTTGATATAGTGGTTACTTTCTCCCATGAATGGGTTACTAAATCAAACGT
ATCTATTGTATCGAAACTTGAATAATGTTCTGAATTTGATCCACCAAAAA
GATATATTCGGTCTTCATGTACGATAGCTTCAGATTTATATCGACCTTGA
CTATCAATACCatgtttcaaacaaaatttatacTCGACCCAACGAAAAGT
CTCCAAATTGAAAATATGTAACTCATCTGTGTATTCTGTTCCAAGAGTTC
CGGAGTATATAAAAATACCATGGTCTGGTGTTACCACCATTGATTGACCG
TATTTAGATATTGGTTTTGAATCATAAATTTCCTTACATCCACATGTCTT
TATGACTATATTGTGATTCTGACTTTGGAGATGCCGACTATTCGTGGTTA
AAGCTTGACTAAAATTGAACCAACGTTGTTTAGTCAAGTCATATAAAAAC
AGTTCATTTGAGTTTTGTTTGGAAAAGGGAAAAGATGTTCCACCAAAAAC
GAATAAGTTGTTGTTAACCAATACCATTGAGCTTGAAACGCTGGTTTGTG
GAGCTTCGTCCAGCAGATCTGGCATTTTGCACCATGTTTTTGTTGCTGTA
TTGTATCGCCACAAATCACGAAACGTTTTACTAGGCTCATCAAATCCACC
AAATATATAAACATGGTTTTTGTTTTTCGCCATACAATGTCCACTTCGAG
GACAAGGGGTTTGTTGTTCCCTGTCAGACTTGATCAGTTTGTAGAAAGTC
TCAGTTGTCCTTTCCATCGTGCTTTTTTATCTTTCTAAAATAGATCCTAC
GAGATGGTAGTCCCTGCTGTAAAACTTACCCTGTCCAATGGTTTATCCTG
GGAAGCAAAACATCATCAACTCACAACATTGACAAACAACAAACTTGCAC
ATCAAGCGACTggatttttaagaaatatacAAATACAACACAATAAACAC
AGACGTCCTAAGATCCTGTTAATCGTCCAATATAGATCGTACGAGAAATA
GTTAGCTATATCTTAATTTATACATTTTCGATGCGAGTATATACTTGCCA
TGTGTTAGAATTATCAAATATCTAGCCCCGGACTATCAACTTGCGCAGGG
TGGGCTTTCTGTCTGTATATTTCTGTTTACCTACCTTTAATAACACTGGA
CAACACAACGACTCTGCAGTTAAATGttctaaaaaacatttttgaaacat
tcttaaaaacaaaaactcaatACAATCTTTAACT

Coding sequence (CDS) from alignment at sc0002412:12318..13851

>TCONS_00040393 ID=TCONS_00040393|Name=TCONS_00040393|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0002412:12318..13851 (Clytia hemisphaerica)
TTAACTGACCTCTGATATTTTTGACCATGCTTTActtttcaaactcaaaa
tccaAACATCATTGAAGAGTCTGTTGGTTGTTTTACCACCGTTGACCACT
ATTGAGCGCATTCCACCCATTAGATAAACATTGTCACCATACTTTACACA
GCTATGAGCTTTCCTTGGTTCTGGGTAAACATACTGTTTGTCTTTATCGA
GTTCTGTTGATATAGTGGTTACTTTCTCCCATGAATGGGTTACTAAATCA
AACGTATCTATTGTATCGAAACTTGAATAATGTTCTGAATTTGATCCACC
AAAAAGATATATTCGGTCTTCATGTACGATAGCTTCAGATTTATATCGAC
CTTGACTATCAATACCatgtttcaaacaaaatttatacTCGACCCAACGA
AAAGTCTCCAAATTGAAAATATGTAACTCATCTGTGTATTCTGTTCCAAG
AGTTCCGGAGTATATAAAAATACCATGGTCTGGTGTTACCACCATTGATT
GACCGTATTTAGATATTGGTTTTGAATCATAAATTTCCTTACATCCACAT
GTCTTTATGACTATATTGTGATTCTGACTTTGGAGATGCCGACTATTCGT
GGTTAAAGCTTGACTAAAATTGAACCAACGTTGTTTAGTCAAGTCATATA
AAAACAGTTCATTTGAGTTTTGTTTGGAAAAGGGAAAAGATGTTCCACCA
AAAACGAATAAGTTGTTGTTAACCAATACCATTGAGCTTGAAACGCTGGT
TTGTGGAGCTTCGTCCAGCAGATCTGGCATTTTGCACCATGTTTTTGTTG
CTGTATTGTATCGCCACAAATCACGAAACGTTTTACTAGGCTCATCAAAT
CCACCAAATATATAAACATGGTTTTTGTTTTTCGCCATACAATGTCCACT
TCGAGGACAAGGGGTTTGTTGTTCCCTGTCAGACTTGATCAGTTTGTAGA
AAGTCTCAGTTGTCCTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024549XLOC_024549Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040393-proteinTCONS_00040393-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040393-exon-sc0002412-1491911889:12318..13851TCONS_00040393-exon-sc0002412-1491911889:12318..13851Clytia hemisphaericaexon
TCONS_00040393-exon-sc0002412-1510915933:12318..13851TCONS_00040393-exon-sc0002412-1510915933:12318..13851Clytia hemisphaericaexon
TCONS_00040393-exon-sc0002412-1575043694:12318..13851TCONS_00040393-exon-sc0002412-1575043694:12318..13851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002412supercontigsc0002412:12318..13851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0535513	0.052221	0	0	0	0.0285334	0	0.0644553	0	0.0558967	0	0	0.534229	0.739737	0.319286	0.897398	0.482409	0.762283	1.73625	3.21674	0.957864	0.530349	0.521907	0.334934	0.258731	0.410508	2.01931	0.195915	0.208032	0.0605577
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
IPR006652Kelch_1
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00040393 vs. Swiss-Prot (Human)
Match: KLD10 (Kelch domain-containing protein 10 OS=Homo sapiens GN=KLHDC10 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.008e-29
Identity = 96/316 (30.38%), Postives = 150/316 (47.47%), Query Frame = 3 
Query:  513 REQQTPCPRSGH-CMAKNKNHVYIFGGFD-----------EPSKTFRDLWRYNTATKTWCKMPDLLDEAPQTXXXXXXXXXXXXXXXXGGTSFPFSKQNSNELFLYDLTKQRWFNFSQALTTNSRHLQSQNHNIVIKTCGCKEIYDSKPISKYGQSMVVTPDHGIFIYSGTLGTEYTDELHIFNLETFRWVEYKFCLKHGIDSQGRYKSEAIVHEDRIYLFGGSNSEHYSSFDTIDTFDLVTHSWEKVTTISTELDKDKQYVYPEPRKAHSCVKYGDNVYLMGGMRSIVVNGGKTTNRLFNDVWILSLKSKAWSKI 1424
            R  + P  RSGH C+A N N +Y+FGG++           E    FR+LWRY+ AT  W +M       P+   S S+VL  NNL VFGGT  PF + N N++ + ++  +RW   S                       C+     KP   YGQ+M +  +  ++++ GT G  Y+ +LH  +L T  W + K         + RY+ E      RIY+ GG  S    S + I  ++L T++WE++ T   E     +  +P  R+ HSCV+  ++V++ GG    V+ G         D+W L+L++  W K+
Sbjct:   84 RGHRPPPARSGHRCVADNTN-LYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQM-GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLS-----------------------CR---GKKPSRIYGQAMAII-NGSLYVFGGTTGYIYSTDLHKLDLNTREWTQLKPNNLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHE-----KIGFPAARRCHSCVQIKNDVFICGGYNGEVILG---------DIWKLNLQTFQWVKL 356
The following BLAST results are available for this feature:
BLAST of TCONS_00040393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLD101.008e-2930.38Kelch domain-containing protein 10 OS=Homo sapiens... [more]
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