TCONS_00040384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040384
Unique NameTCONS_00040384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040384 ID=TCONS_00040384|Name=TCONS_00040384|organism=Clytia hemisphaerica|type=transcript|length=888bp
NNCTGACAAAATCGTTAACAAATtgacaaagataaaaaacataatgaaag
aaaatattaaagGAACAACTACTGTGGACGATAAAAGTGACAGTAAAAAT
GAGATAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTGCCACC
AAAGGATGGTTATTGGTTTAAGCAGGGATATTTACGCGTAAAACGAAAAA
TTGTTAATGATGACGATGGCGAGGATGATGACGGGGTTGATAGCGAACAT
GATACCAAGCATAATACCGAGCATGAGGATGTTGACAGTGAACATTTCAT
CGTTGAGGAATCGCATCGTGTTTCACCGCTTGACGAATCTACAGAAAAAC
ATCAGTCGTTCCCAAATGCTGTCAATGTAGTGAGATCAGATAGCaccgaa
aatgaaaaactttctgTTTCACCACTTGACGAATCTACAGAAGAACATCA
GTCGTTCCCAAATGCTGCCAACGTGTTGAAATCAGATTGCAACGAACAGA
AAATTGAAAGGCCATTTTTGCATTCAAAAATGATTGGCGTATTTCCTAGT
GTTGCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCTAAATGC
TGCCAATGTAGTGAGATCAGATAGCAccgaaaattaaaaactttctgTTT
CAGCATTTGAcgaatcaaaagaaaatcatcaGTCGTTCTTAAATGCTGAC
AGCTCAAAATCAAAACGAAAGAAACCACTGTCGATCAAGAATAAAGGTTT
GTAATTCTCGACAATACTTTGATGTCAGTTTACTTCTACTAAATCAGTAC
CTAAATTATGTGGAAATAAGACCGCAGCGTTTGCAATCTGATTAGAATCT
TTTCATTTGCTGACATTCATGGGGGCGTACCAGTTTGT
Run BLAST on NCBI

protein sequence of TCONS_00040384-protein

>TCONS_00040384-protein ID=TCONS_00040384-protein|Name=TCONS_00040384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
XDKIVNKLTKIKNIMKENIKGTTTVDDKSDSKNEIMLSPAARNYCSKLPP
KDGYWFKQGYLRVKRKIVNDDDGEDDDGVDSEHDTKHNTEHEDVDSEHFI
VEESHRVSPLDESTEKHQSFPNAVNVVRSDSTENEKLSVSPLDESTEEHQ
SFPNAANVLKSDCNEQKIERPFLHSKMIGVFPSVAPLDESTEKHQSFLNA
ANVVRSDSTEN
Run BLAST on NCBI

transcript from alignment at sc0002411:3444..5981+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040384 ID=TCONS_00040384|Name=TCONS_00040384|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at sc0002411:3444..5981+ (Clytia hemisphaerica)
NNCTGACAAAATCGTTAACAAATtgacaaagataaaaaacataatgaaag
aaaatattaaaggtgcttttatatatattttttttatttagactgatttt
ttttttactttgaatgaaAGCATACACCCGATGATCGGCTTCAAGGCGTG
AgaaagaaaaacgtttttttatttgttagaaTTTGGCATACTAACGAACT
TATTAAAAAGTagttattgtttttcttttatattcagGAACAACTACTGT
GGACGATAAAAGTGACAGTAAAAATGAGGTATACCCTTTAGCAATTTTGT
TTCTGGAATTTTCGATGTTTTGCCAAGTAAATAAAAAGGCACGTGAAGTA
GAACACCTACACAGTATGCCATACtgaaaaccattaaaaaaccattaaaa
aaccattataattttttgttgttttttaattcCTAGTTAATTTTAATTTC
GATTTTAGATAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTG
CCACCAAAGGATGGTTATTGGTTTAAGCAGGTGAGATATATTTAAATTCC
TGCGATATATTCTCAATTTCGAAATGAGTCATTCGAGAAGGAGTGATAAA
AAAGATGGGTAATATTTTTTTAGTCCTTGACTAAAGAAATTGATTGTTTA
ATTTCATACTTTAGGGATATTTACGCGTAAAACGAAAAATTGTTAATGAT
GACGATGGCGAGGATGATGACGGGGTTGATAGCGAACATGATACCAAGCA
TAATACCGAGCATGAGGATGTTGACAGTGAACATTTCATCGTTGAGGAAT
CGCATCGTGGTAAGATTGTCTTTAGTGTACCAATGGTAACATGGAATTAT
AATTGAATCCCTCCTCTCTATAAACCTCATTTTACCCATTTTACTTACTT
TGTTTAGAACGAACTTGCTTTTTGGACCTACCTCGGAGGTCCTTTAAATT
AACCGATGTTCGTGTGTTCGTTCgtttgttaccagcttttctcgggattg
gcccattagttttttctgattcccaaaaagtgacggagcccgattctCGA
AACAAAATTTCCGGCGGAAAATCCCGGAAATCGCTGAATTTCCTAATATT
TTATAGCAATGCTGGAccatataaatttttttcagtccctttgcgttttt
attttctttttctatttccATTCTATATTTActattaggtaggtccattt
tgCATTCTGTTTGTTTGTATTTTACTGATTGCCTGAAACGGCTTAATATC
AATATATCTCGATTCATATAATTGTTATTTTCGAATCAGTTTCACCGCTT
GACGAATCTACAGAAAAACATCAGTCGTTCCCAAATGCTGTCAATGTAGT
GAGATCAGATAGCaccgaaaatgaaaaactttctggTAAGTTATAGAAAT
CTTTATATACGataacatgaaaataaaatgaaacctctctctctttctct
ctctctctctctctctctgccaatcttaaaaaattattttacttgCTTCG
TTTCGGACAAAAGTCCTTGCTTTTATGTATTTTACTGATTGCCTGAAGCT
GGGCTTAATATCAATATATCTCGATTCATATAATTGTTATTTTCGANGCT
TCGTTTCGGACAAAAGTCCTTGCTTTTATGTATTTTACTGATTGCCTGAA
GCTGGGCTTAATATCAGTATATCTCGATTCATATAATTGTTATTTTCGAA
TCAGTTTCACCACTTGACGAATCTACAGAAGAACATCAGTCGTTCCCAAA
TGCTGCCAACGTGTTGAAATCAGATTGCAACGAACAGAAAATTGAAAGGC
CATTTTTGCATTCAAAAATGATTGGCGTATTTCCTAGTGGTAAGATTGTC
TTGAAAAacctcggggggggggggaaaagaAAANgaaaacccgggggggg
gggggtaacaGAAAATCATAGTGAAACCTCTTCGTTAATTTTAGTATAGC
TTTTTACTTGTTtggataaaaactcctatttTGTCTGTATTGATTGCCTG
AAACTGGGCACAATATCAATATTTCTCGATTCATATAATTGTTATTTTCG
AATCAGTTGCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCTA
AATGCTGCCAATGTAGTGAGATCAGATAGCAccgaaaattaaaaactttc
tgGTAAGTTATAGAAATCTTTATATACGATaacatgaaattaaaatgaaa
cctctctctctctctctctctctgccAATCTTAGAATATTATTTTACTTA
TATTTACAATATTTCTCAATTTATATATACTATTGTTTCAATATCAGTTT
CAGCATTTGAcgaatcaaaagaaaatcatcaGTCGTTCTTAAATGCTGAC
AGCTCAAAATCAAAACGAAAGAAACCACTGTCGATCAAGAATAAAGGTTT
GTAATTCTCGACAATACTTTGATGTCAGTTTACTTCTACTAAATCAGTAC
CTAAATTATGTGGAAATAAGACCGCAGCGTTTGCAATCTGATTAGAATCT
TTTCATTTGCTGACATTCATGGGGGCGTACCAGTTTGT

Coding sequence (CDS) from alignment at sc0002411:3444..5981+

>TCONS_00040384 ID=TCONS_00040384|Name=TCONS_00040384|organism=Clytia hemisphaerica|type=CDS|length=4452bp|location=Sequence derived from alignment at sc0002411:3444..5981+ (Clytia hemisphaerica)
NCTGACAAAATCGTTAACAAATtgacaaagataaaaaacataatgaaaga
aaatattaaagGAACAACTACTGTGGACGATAAAAGTGACAGTAAAAATG
AGATAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTGCCACCA
AAGGATGGTTATTGGTTTAAGCAGGGATATTTACGCGTAAAACGAAAAAT
TGTTAATGATGACGATGGCGAGGATGATGACGGGGTTGATAGCGAACATG
ATACCAAGCATAATACCGAGCATGAGGATGTTGACAGTGAACATTTCATC
GTTGAGGAATCGCATCGTGTTTCACCGCTTGACGAATCTACAGAAAAACA
TCAGTCGTTCCCAAATGCTGTCAATGTAGTGAGATCAGATAGCaccgaaa
atgaaaaactttctgTTTCACCACTTGACGAATCTACAGAAGAACATCAG
TCGTTCCCAAATGCTGCCAACGTGTTGAAATCAGATTGCAACGAACAGAA
AATTGAAAGGCCATTTTTGCATTCAAAAATGATTGGCGTATTTCCTAGTG
TTGCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCTAAATGCT
GCCAATGTAGTGAGATCAGATAGCAccgaaaattaaNCTGACAAAATCGT
TAACAAATtgacaaagataaaaaacataatgaaagaaaatattaaagGAA
CAACTACTGTGGACGATAAAAGTGACAGTAAAAATGAGATAATGCTCTCA
CCCGCTGCTCGAAATTATTGCTCAAAACTGCCACCAAAGGATGGTTATTG
GTTTAAGCAGGGATATTTACGCGTAAAACGAAAAATTGTTAATGATGACG
ATGGCGAGGATGATGACGGGGTTGATAGCGAACATGATACCAAGCATAAT
ACCGAGCATGAGGATGTTGACAGTGAACATTTCATCGTTGAGGAATCGCA
TCGTGTTTCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCCAA
ATGCTGTCAATGTAGTGAGATCAGATAGCaccgaaaatgaaaaactttct
gTTTCACCACTTGACGAATCTACAGAAGAACATCAGTCGTTCCCAAATGC
TGCCAACGTGTTGAAATCAGATTGCAACGAACAGAAAATTGAAAGGCCAT
TTTTGCATTCAAAAATGATTGGCGTATTTCCTAGTGTTGCACCGCTTGAC
GAATCTACAGAAAAACATCAGTCGTTCCTAAATGCTGCCAATGTAGTGAG
ATCAGATAGCAccgaaaattaaNCTGACAAAATCGTTAACAAATtgacaa
agataaaaaacataatgaaagaaaatattaaagGAACAACTACTGTGGAC
GATAAAAGTGACAGTAAAAATGAGATAATGCTCTCACCCGCTGCTCGAAA
TTATTGCTCAAAACTGCCACCAAAGGATGGTTATTGGTTTAAGCAGGGAT
ATTTACGCGTAAAACGAAAAATTGTTAATGATGACGATGGCGAGGATGAT
GACGGGGTTGATAGCGAACATGATACCAAGCATAATACCGAGCATGAGGA
TGTTGACAGTGAACATTTCATCGTTGAGGAATCGCATCGTGTTTCACCGC
TTGACGAATCTACAGAAAAACATCAGTCGTTCCCAAATGCTGTCAATGTA
GTGAGATCAGATAGCaccgaaaatgaaaaactttctgTTTCACCACTTGA
CGAATCTACAGAAGAACATCAGTCGTTCCCAAATGCTGCCAACGTGTTGA
AATCAGATTGCAACGAACAGAAAATTGAAAGGCCATTTTTGCATTCAAAA
ATGATTGGCGTATTTCCTAGTGTTGCACCGCTTGACGAATCTACAGAAAA
ACATCAGTCGTTCCTAAATGCTGCCAATGTAGTGAGATCAGATAGCAccg
aaaattaaNCTGACAAAATCGTTAACAAATtgacaaagataaaaaacata
atgaaagaaaatattaaagGAACAACTACTGTGGACGATAAAAGTGACAG
TAAAAATGAGATAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAAC
TGCCACCAAAGGATGGTTATTGGTTTAAGCAGGGATATTTACGCGTAAAA
CGAAAAATTGTTAATGATGACGATGGCGAGGATGATGACGGGGTTGATAG
CGAACATGATACCAAGCATAATACCGAGCATGAGGATGTTGACAGTGAAC
ATTTCATCGTTGAGGAATCGCATCGTGTTTCACCGCTTGACGAATCTACA
GAAAAACATCAGTCGTTCCCAAATGCTGTCAATGTAGTGAGATCAGATAG
CaccgaaaatgaaaaactttctgTTTCACCACTTGACGAATCTACAGAAG
AACATCAGTCGTTCCCAAATGCTGCCAACGTGTTGAAATCAGATTGCAAC
GAACAGAAAATTGAAAGGCCATTTTTGCATTCAAAAATGATTGGCGTATT
TCCTAGTGTTGCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCC
TAAATGCTGCCAATGTAGTGAGATCAGATAGCAccgaaaattaaNCTGAC
AAAATCGTTAACAAATtgacaaagataaaaaacataatgaaagaaaatat
taaagGAACAACTACTGTGGACGATAAAAGTGACAGTAAAAATGAGATAA
TGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTGCCACCAAAGGAT
GGTTATTGGTTTAAGCAGGGATATTTACGCGTAAAACGAAAAATTGTTAA
TGATGACGATGGCGAGGATGATGACGGGGTTGATAGCGAACATGATACCA
AGCATAATACCGAGCATGAGGATGTTGACAGTGAACATTTCATCGTTGAG
GAATCGCATCGTGTTTCACCGCTTGACGAATCTACAGAAAAACATCAGTC
GTTCCCAAATGCTGTCAATGTAGTGAGATCAGATAGCaccgaaaatgaaa
aactttctgTTTCACCACTTGACGAATCTACAGAAGAACATCAGTCGTTC
CCAAATGCTGCCAACGTGTTGAAATCAGATTGCAACGAACAGAAAATTGA
AAGGCCATTTTTGCATTCAAAAATGATTGGCGTATTTCCTAGTGTTGCAC
CGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCTAAATGCTGCCAAT
GTAGTGAGATCAGATAGCAccgaaaattaaNCTGACAAAATCGTTAACAA
ATtgacaaagataaaaaacataatgaaagaaaatattaaagGAACAACTA
CTGTGGACGATAAAAGTGACAGTAAAAATGAGATAATGCTCTCACCCGCT
GCTCGAAATTATTGCTCAAAACTGCCACCAAAGGATGGTTATTGGTTTAA
GCAGGGATATTTACGCGTAAAACGAAAAATTGTTAATGATGACGATGGCG
AGGATGATGACGGGGTTGATAGCGAACATGATACCAAGCATAATACCGAG
CATGAGGATGTTGACAGTGAACATTTCATCGTTGAGGAATCGCATCGTGT
TTCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCCAAATGCTG
TCAATGTAGTGAGATCAGATAGCaccgaaaatgaaaaactttctgTTTCA
CCACTTGACGAATCTACAGAAGAACATCAGTCGTTCCCAAATGCTGCCAA
CGTGTTGAAATCAGATTGCAACGAACAGAAAATTGAAAGGCCATTTTTGC
ATTCAAAAATGATTGGCGTATTTCCTAGTGTTGCACCGCTTGACGAATCT
ACAGAAAAACATCAGTCGTTCCTAAATGCTGCCAATGTAGTGAGATCAGA
TAGCAccgaaaattaaNCTGACAAAATCGTTAACAAATtgacaaagataa
aaaacataatgaaagaaaatattaaagGAACAACTACTGTGGACGATAAA
AGTGACAGTAAAAATGAGATAATGCTCTCACCCGCTGCTCGAAATTATTG
CTCAAAACTGCCACCAAAGGATGGTTATTGGTTTAAGCAGGGATATTTAC
GCGTAAAACGAAAAATTGTTAATGATGACGATGGCGAGGATGATGACGGG
GTTGATAGCGAACATGATACCAAGCATAATACCGAGCATGAGGATGTTGA
CAGTGAACATTTCATCGTTGAGGAATCGCATCGTGTTTCACCGCTTGACG
AATCTACAGAAAAACATCAGTCGTTCCCAAATGCTGTCAATGTAGTGAGA
TCAGATAGCaccgaaaatgaaaaactttctgTTTCACCACTTGACGAATC
TACAGAAGAACATCAGTCGTTCCCAAATGCTGCCAACGTGTTGAAATCAG
ATTGCAACGAACAGAAAATTGAAAGGCCATTTTTGCATTCAAAAATGATT
GGCGTATTTCCTAGTGTTGCACCGCTTGACGAATCTACAGAAAAACATCA
GTCGTTCCTAAATGCTGCCAATGTAGTGAGATCAGATAGCAccgaaaatt
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024542XLOC_024542Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040384-proteinTCONS_00040384-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040384-exon-sc0002411-1491911889:3444..3505TCONS_00040384-exon-sc0002411-1491911889:3444..3505Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:3444..3505TCONS_00040384-exon-sc0002411-1510915933:3444..3505Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:3444..3505TCONS_00040384-exon-sc0002411-1575043694:3444..3505Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1491911889:3681..3721TCONS_00040384-exon-sc0002411-1491911889:3681..3721Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:3681..3721TCONS_00040384-exon-sc0002411-1510915933:3681..3721Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:3681..3721TCONS_00040384-exon-sc0002411-1575043694:3681..3721Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1491911889:3902..3973TCONS_00040384-exon-sc0002411-1491911889:3902..3973Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:3902..3973TCONS_00040384-exon-sc0002411-1510915933:3902..3973Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:3902..3973TCONS_00040384-exon-sc0002411-1575043694:3902..3973Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1491911889:4108..4252TCONS_00040384-exon-sc0002411-1491911889:4108..4252Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:4108..4252TCONS_00040384-exon-sc0002411-1510915933:4108..4252Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:4108..4252TCONS_00040384-exon-sc0002411-1575043694:4108..4252Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1491911889:4733..4828TCONS_00040384-exon-sc0002411-1491911889:4733..4828Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:4733..4828TCONS_00040384-exon-sc0002411-1510915933:4733..4828Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:4733..4828TCONS_00040384-exon-sc0002411-1575043694:4733..4828Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1491911889:5148..5282TCONS_00040384-exon-sc0002411-1491911889:5148..5282Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:5148..5282TCONS_00040384-exon-sc0002411-1510915933:5148..5282Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:5148..5282TCONS_00040384-exon-sc0002411-1575043694:5148..5282Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1491911889:5500..5595TCONS_00040384-exon-sc0002411-1491911889:5500..5595Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:5500..5595TCONS_00040384-exon-sc0002411-1510915933:5500..5595Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:5500..5595TCONS_00040384-exon-sc0002411-1575043694:5500..5595Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1491911889:5741..5981TCONS_00040384-exon-sc0002411-1491911889:5741..5981Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1510915933:5741..5981TCONS_00040384-exon-sc0002411-1510915933:5741..5981Clytia hemisphaericaexon
TCONS_00040384-exon-sc0002411-1575043694:5741..5981TCONS_00040384-exon-sc0002411-1575043694:5741..5981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002411supercontigsc0002411:3444..5981 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122703	0	0	0	14.1019	15.3463	10.2309	16.717	15.254	14.4716	13.4749	15.4059	12.6109	9.66613	0.141321	0.460083	0	0	0.294103	0	0.44809	0	0	0.473212	4.79964	13.3448	0.144216	0.245598	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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