TCONS_00040380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040380
Unique NameTCONS_00040380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040380 ID=TCONS_00040380|Name=TCONS_00040380|organism=Clytia hemisphaerica|type=transcript|length=657bp
NNCTGACAAAATCGTTAACAAATtgacaaagataaaaaacataatgaaag
aaaatattaaagGAACAACTACTGTGGACGATAAAAGTGACAGTAAAAAT
GAGATAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTGCCACC
AAAGGATGGTTATTGGTTTAAGCAGGGATATTTACGCGTAAAACGAAAAA
TTGTTAATGATGACGATGGCGAGGATGATGACGGGGTTGATAGCGAACAT
GATACCAAGCATAATACCGAGCATGAGGATGTTGACAGTGAACATTTCAT
CGTTGAGGAATCGCATCGTGTTTCACCGCTTGACGAATCTACAGAAAAAC
ATCAGTCGTTCCTAAATGCTGCCAATGTAGTGAGATCAGATAGCAccgaa
aattaaaaactttctgTTTCAGCATTTGAcgaatcaaaagaaaatcatca
GTCGTTCTTAAATGCTGACAGCTCAAAATCAAAACGAAAGAAACCACTGT
CGATCAAGAATAAAGGTTTGTAATTCTCGACAATACTTTGATGTCAGTTT
ACTTCTACTAAATCAGTACCTAAATTATGTGGAAATAAGACCGCAGCGTT
TGCAATCTGATTAGAATCTTTTCATTTGCTGACATTCATGGGGGCGTACC
AGTTTGT
Run BLAST on NCBI

transcript from alignment at sc0002411:3444..5981+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040380 ID=TCONS_00040380|Name=TCONS_00040380|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at sc0002411:3444..5981+ (Clytia hemisphaerica)
NNCTGACAAAATCGTTAACAAATtgacaaagataaaaaacataatgaaag
aaaatattaaaggtgcttttatatatattttttttatttagactgatttt
ttttttactttgaatgaaAGCATACACCCGATGATCGGCTTCAAGGCGTG
AgaaagaaaaacgtttttttatttgttagaaTTTGGCATACTAACGAACT
TATTAAAAAGTagttattgtttttcttttatattcagGAACAACTACTGT
GGACGATAAAAGTGACAGTAAAAATGAGGTATACCCTTTAGCAATTTTGT
TTCTGGAATTTTCGATGTTTTGCCAAGTAAATAAAAAGGCACGTGAAGTA
GAACACCTACACAGTATGCCATACtgaaaaccattaaaaaaccattaaaa
aaccattataattttttgttgttttttaattcCTAGTTAATTTTAATTTC
GATTTTAGATAATGCTCTCACCCGCTGCTCGAAATTATTGCTCAAAACTG
CCACCAAAGGATGGTTATTGGTTTAAGCAGGTGAGATATATTTAAATTCC
TGCGATATATTCTCAATTTCGAAATGAGTCATTCGAGAAGGAGTGATAAA
AAAGATGGGTAATATTTTTTTAGTCCTTGACTAAAGAAATTGATTGTTTA
ATTTCATACTTTAGGGATATTTACGCGTAAAACGAAAAATTGTTAATGAT
GACGATGGCGAGGATGATGACGGGGTTGATAGCGAACATGATACCAAGCA
TAATACCGAGCATGAGGATGTTGACAGTGAACATTTCATCGTTGAGGAAT
CGCATCGTGGTAAGATTGTCTTTAGTGTACCAATGGTAACATGGAATTAT
AATTGAATCCCTCCTCTCTATAAACCTCATTTTACCCATTTTACTTACTT
TGTTTAGAACGAACTTGCTTTTTGGACCTACCTCGGAGGTCCTTTAAATT
AACCGATGTTCGTGTGTTCGTTCgtttgttaccagcttttctcgggattg
gcccattagttttttctgattcccaaaaagtgacggagcccgattctCGA
AACAAAATTTCCGGCGGAAAATCCCGGAAATCGCTGAATTTCCTAATATT
TTATAGCAATGCTGGAccatataaatttttttcagtccctttgcgttttt
attttctttttctatttccATTCTATATTTActattaggtaggtccattt
tgCATTCTGTTTGTTTGTATTTTACTGATTGCCTGAAACGGCTTAATATC
AATATATCTCGATTCATATAATTGTTATTTTCGAATCAGTTTCACCGCTT
GACGAATCTACAGAAAAACATCAGTCGTTCCCAAATGCTGTCAATGTAGT
GAGATCAGATAGCaccgaaaatgaaaaactttctggTAAGTTATAGAAAT
CTTTATATACGataacatgaaaataaaatgaaacctctctctctttctct
ctctctctctctctctctgccaatcttaaaaaattattttacttgCTTCG
TTTCGGACAAAAGTCCTTGCTTTTATGTATTTTACTGATTGCCTGAAGCT
GGGCTTAATATCAATATATCTCGATTCATATAATTGTTATTTTCGANGCT
TCGTTTCGGACAAAAGTCCTTGCTTTTATGTATTTTACTGATTGCCTGAA
GCTGGGCTTAATATCAGTATATCTCGATTCATATAATTGTTATTTTCGAA
TCAGTTTCACCACTTGACGAATCTACAGAAGAACATCAGTCGTTCCCAAA
TGCTGCCAACGTGTTGAAATCAGATTGCAACGAACAGAAAATTGAAAGGC
CATTTTTGCATTCAAAAATGATTGGCGTATTTCCTAGTGGTAAGATTGTC
TTGAAAAacctcggggggggggggaaaagaAAANgaaaacccgggggggg
gggggtaacaGAAAATCATAGTGAAACCTCTTCGTTAATTTTAGTATAGC
TTTTTACTTGTTtggataaaaactcctatttTGTCTGTATTGATTGCCTG
AAACTGGGCACAATATCAATATTTCTCGATTCATATAATTGTTATTTTCG
AATCAGTTGCACCGCTTGACGAATCTACAGAAAAACATCAGTCGTTCCTA
AATGCTGCCAATGTAGTGAGATCAGATAGCAccgaaaattaaaaactttc
tgGTAAGTTATAGAAATCTTTATATACGATaacatgaaattaaaatgaaa
cctctctctctctctctctctctgccAATCTTAGAATATTATTTTACTTA
TATTTACAATATTTCTCAATTTATATATACTATTGTTTCAATATCAGTTT
CAGCATTTGAcgaatcaaaagaaaatcatcaGTCGTTCTTAAATGCTGAC
AGCTCAAAATCAAAACGAAAGAAACCACTGTCGATCAAGAATAAAGGTTT
GTAATTCTCGACAATACTTTGATGTCAGTTTACTTCTACTAAATCAGTAC
CTAAATTATGTGGAAATAAGACCGCAGCGTTTGCAATCTGATTAGAATCT
TTTCATTTGCTGACATTCATGGGGGCGTACCAGTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024542XLOC_024542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040380-exon-sc0002411-1491911889:3444..3505TCONS_00040380-exon-sc0002411-1491911889:3444..3505Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1510915933:3444..3505TCONS_00040380-exon-sc0002411-1510915933:3444..3505Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1575043694:3444..3505TCONS_00040380-exon-sc0002411-1575043694:3444..3505Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1491911889:3681..3721TCONS_00040380-exon-sc0002411-1491911889:3681..3721Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1510915933:3681..3721TCONS_00040380-exon-sc0002411-1510915933:3681..3721Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1575043694:3681..3721TCONS_00040380-exon-sc0002411-1575043694:3681..3721Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1491911889:3902..3973TCONS_00040380-exon-sc0002411-1491911889:3902..3973Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1510915933:3902..3973TCONS_00040380-exon-sc0002411-1510915933:3902..3973Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1575043694:3902..3973TCONS_00040380-exon-sc0002411-1575043694:3902..3973Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1491911889:4108..4252TCONS_00040380-exon-sc0002411-1491911889:4108..4252Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1510915933:4108..4252TCONS_00040380-exon-sc0002411-1510915933:4108..4252Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1575043694:4108..4252TCONS_00040380-exon-sc0002411-1575043694:4108..4252Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1491911889:4733..4762TCONS_00040380-exon-sc0002411-1491911889:4733..4762Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1510915933:4733..4762TCONS_00040380-exon-sc0002411-1510915933:4733..4762Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1575043694:4733..4762TCONS_00040380-exon-sc0002411-1575043694:4733..4762Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1491911889:5530..5595TCONS_00040380-exon-sc0002411-1491911889:5530..5595Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1510915933:5530..5595TCONS_00040380-exon-sc0002411-1510915933:5530..5595Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1575043694:5530..5595TCONS_00040380-exon-sc0002411-1575043694:5530..5595Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1491911889:5741..5981TCONS_00040380-exon-sc0002411-1491911889:5741..5981Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1510915933:5741..5981TCONS_00040380-exon-sc0002411-1510915933:5741..5981Clytia hemisphaericaexon
TCONS_00040380-exon-sc0002411-1575043694:5741..5981TCONS_00040380-exon-sc0002411-1575043694:5741..5981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002411supercontigsc0002411:3444..5981 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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