TCONS_00040370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040370
Unique NameTCONS_00040370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040370 ID=TCONS_00040370|Name=TCONS_00040370|organism=Clytia hemisphaerica|type=transcript|length=491bp
CTAGATAGCTAAGCCCTTTCTTAACCGAAATACCACctcaaaattaaagt
aaaatttaaatACATTCAGCAGAATGTCAACACTGTTGTTTTGGACtcca
atatttttctaaagcttttgaaaTTAATCTTTGTTTCAGTCTAATAAATT
AAAATCATCCTAATTAcagtagaaaaaagttttcatcaCCAAAAATAACA
Taagtaaaattcaatcaaaatttttgaaataaaatttctaaataaaaatt
gatttttgccaCTACATTCCAGAGTCACTGCCAATTAATGTTCACGTACA
AATTTTGGTCATTGTGCAGCTATGACCTTACCATCGCTGGGAGTGTCAAT
ATtgtcagcaaaaaaaataacaaaaaagctgACCATCATTCCATTTCAGT
CTTTCATGTgtattttccaatattttaacaAAGTTTGACCAATCTGACAT
AAAGTATAGTCAGGAAAGTCATATATAATATATCAAACTAT
Run BLAST on NCBI

transcript from alignment at sc0002402:6475..6965

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040370 ID=TCONS_00040370|Name=TCONS_00040370|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0002402:6475..6965 (Clytia hemisphaerica)
ATAGTTTGATATATTATATATGACTTTCCTGACTATACTTTATGTCAGAT
TGGTCAAACTTtgttaaaatattggaaaatacACATGAAAGACTGAAATG
GAATGATGGTcagcttttttgttattttttttgctgacaATATTGACACT
CCCAGCGATGGTAAGGTCATAGCTGCACAATGACCAAAATTTGTACGTGA
ACATTAATTGGCAGTGACTCTGGAATGTAGtggcaaaaatcaatttttat
ttagaaattttatttcaaaaattttgattgaattttacttATGTTATTTT
TGGtgatgaaaacttttttctactgTAATTAGGATGATTTTAATTTATTA
GACTGAAACAAAGATTAAtttcaaaagctttagaaaaatattggaGTCCA
AAACAACAGTGTTGACATTCTGCTGAATGTatttaaattttactttaatt
ttgagGTGGTATTTCGGTTAAGAAAGGGCTTAGCTATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024532XLOC_024532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040370-exon-sc0002402-1491911889:6475..6965TCONS_00040370-exon-sc0002402-1491911889:6475..6965Clytia hemisphaericaexon
TCONS_00040370-exon-sc0002402-1510915933:6475..6965TCONS_00040370-exon-sc0002402-1510915933:6475..6965Clytia hemisphaericaexon
TCONS_00040370-exon-sc0002402-1575043694:6475..6965TCONS_00040370-exon-sc0002402-1575043694:6475..6965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002402supercontigsc0002402:6475..6965 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.278338	0.0892303	0	1.7143	1.67081	3.28749	2.1507	2.6561	2.96576	1.4474	2.54713	0.66569	1.5573	1.05714	0.984916	0.324689	0.535423	1.50534	1.44465	3.19725	2.35626	1.285	1.58586	0	0.430081	17.178	12.0412	7.44043	7.58333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top