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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040358 ID=TCONS_00040358|Name=TCONS_00040358|organism=Clytia hemisphaerica|type=transcript|length=2150bp
TGTCGCGAATGCGATTTGAACATTTAAAGAACATTCTCGAAAAGAGAAGA
AACGAagaaacatttcgaaatttctcGACACGttgtttatgacgtaatct
GAGCACGTTTGTACATTACATAAACTGAACTCAGCAATTCTCATTGTACA
TAAACGAGTTTGGCAAGTTTAAAAGCGCTAACTCATCAGACTTGAACGTG
ACGTAGAACACGTACTAAATCTTcattatatttgaacaataggtctttta
ttttgctttgtttAGGATTTTCATTATATCAGCAGTTTTTGAAGTAGTAT
ATAAGTAGGGAATATTTCTAGGGTATTTTAGAGTTAAATTTTAGTGATAA
AGAAGATATACGCTATTCAAGCAATAAGGAACTCTCAATCAATTTAGGTT
CCTAAAACATCGAATCATAGCCGCAATAATTACATGGTAGCAGAGGGTGG
TTCAATTCGTTGTTTTATGGATTCAAGAGGAAAATCGCTTCAACAAGCGC
AGAGGAAAACAAAGCAAGGATAAATTTTGTTATCGCGAGAGAAATTTCGT
TAACAAATAAAGAACCATATAATAAAGGAACATTTGGATTTATATAATTT
AAATTCAAGAAAGTTTGTCAAAAGGAGATATTAATTGGTACAGGAGAAAC
TTTCAAAAAAGAAACTTAAACAAGAGGAATATCTTTTATTACAAAGGATT
AACAGGAGTAAACGAGAGAAACAATTGAAACTATGGCGTCGAAGAGAATC
GAGACATCAAAACAGAGATTATTTGAGAAAATCGAAGAGGGAAAGAAATA
CCTCAAAGAAAAAGAGAACATTTACGAAGTTAATGAGCTTACCAGACTTA
GAAATGCCGTAGCCAAGAAAAACGCACAATTTGAAAAGGACATTCAAGAG
TACGAGAAATCTGAAAATAAAGATGAAGAGAAAGTCACCAAATACCAAGA
CTTTCAAGTCGAAGCTGAGGACATCTTGGATGATTTGGAACATTACATCG
AGACTACCAAGGAGAAATTTGAGAGGGAGGAACGAGAGAAGATTCGCCAA
CTAGAGGCTGAGGAGAAAAATCGCCAACTCGAAGCTGAGGAGAAAAATCG
CCAACTCGAAGCTGAGGAAAAGAGACGAGAACAAGAATTTCAACTGGAGA
AACTTCGTATCGAGTCTGAAGTTCAGATGGAGAAGTGTAAAGCCGACACA
GCCACTGCGACCGCAACTGCAGCTTTAGAGAAAAAGAACACTGTGAAACA
ACAAACTGTTCGACTACCAAAGTTAGAGCTTAAAAGATTTAATGGACAGA
TATTGAAATGGCAAGCCTTCTGGGACAGTTTTGAGGCAACAATTGATAAG
AATGACTCACTTAGCAAGATAGATAAATTGAACTATCTTCGCTCCCAGCT
AGAAGGTACAGCTCTAAAATCGATCAATGGACTAGAGCTGACACAGACAA
ACTATAACGTTGCTATCGAAATTTTGAAGGAGAGATATGGAAATACGCAA
CTGATCATAGATAACCATTATACAAAGCTATCGGACTTGGGTGTTGCAAC
TGATAGAACCTATTCATTGAGATCAACTTTCGATACAATCGAACAACACC
TAAGATCATTGGAAGCCCTAGGAGAACACATTGATCAAAGACAGAATATC
ACTCTAATCCGAAGAAAATTTCCAGAATCCGTCATCAAGCAGATCGAAAT
GCAAAAACCACCAGAAGAACCTTGGACTGTCGAGAACTTGAGAAAAACCT
TACAGAGATATATTGCAGCAAACGAACTTGCAGCCCAACATGAGCCTAAA
ACAAATCATCAGGGCAACCGTCGACCCGACTACAGAGATGGAACCATGTT
CTCCAACACCAGACAACGCACCTTGAAATGCATATTTTGTGGAAAGGGAC
ATTGGAACGACGAGTGCAAAACTGTTCCAACCGTCAAGGAAAGAAAAGAG
AAGTTGAAGGGGAAGTGCTTCATATGCTTAAAAAGCCACCAAGGAAGATG
TAGGAGACAANAGTGCAAAACTGTTCCAACCGTCAAGGAAAGAAAGGAGA
AGTTGAAGGGGAAGTGCTTCATATGCTTAAAAAACCACCAAGGAAGATGT
AGGAGACAAAAACCGTGTTACCATTGCAAGAAAACTGACCATCATCGAAG Run BLAST on NCBI protein sequence of TCONS_00040358-protein >TCONS_00040358-protein ID=TCONS_00040358-protein|Name=TCONS_00040358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MASKRIETSKQRLFEKIEEGKKYLKEKENIYEVNELTRLRNAVAKKNAQF
EKDIQEYEKSENKDEEKVTKYQDFQVEAEDILDDLEHYIETTKEKFEREE
REKIRQLEAEEKNRQLEAEEKNRQLEAEEKRREQEFQLEKLRIESEVQME
KCKADTATATATAALEKKNTVKQQTVRLPKLELKRFNGQILKWQAFWDSF
EATIDKNDSLSKIDKLNYLRSQLEGTALKSINGLELTQTNYNVAIEILKE
RYGNTQLIIDNHYTKLSDLGVATDRTYSLRSTFDTIEQHLRSLEALGEHI
DQRQNITLIRRKFPESVIKQIEMQKPPEEPWTVENLRKTLQRYIAANELA
AQHEPKTNHQGNRRPDYRDGTMFSNTRQRTLKCIFCGKGHWNDECKTVPT
VKERKEKLKGKCFICLKSHQGRCRRQXCKTVPTVKERKEKLKGKCFICLK
NHQGRCRRQKPCYHCKKTDHHR Run BLAST on NCBI transcript from alignment at sc0002397:10611..12760 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040358 ID=TCONS_00040358|Name=TCONS_00040358|organism=Clytia hemisphaerica|type=transcript|length=2150bp|location=Sequence derived from alignment at sc0002397:10611..12760 (Clytia hemisphaerica)
CTTCGATGATGGTCAGTTTTCTTGCAATGGTAACACGGTTTTTGTCTCCT
ACATCTTCCTTGGTGGTTTTTTAAGCATATGAAGCACTTCCCCTTCAACT
TCTCCTTTCTTTCCTTGACGGTTGGAACAGTTTTGCACTNTTGTCTCCTA
CATCTTCCTTGGTGGCTTTTTAAGCATATGAAGCACTTCCCCTTCAACTT
CTCTTTTCTTTCCTTGACGGTTGGAACAGTTTTGCACTCGTCGTTCCAAT
GTCCCTTTCCACAAAATATGCATTTCAAGGTGCGTTGTCTGGTGTTGGAG
AACATGGTTCCATCTCTGTAGTCGGGTCGACGGTTGCCCTGATGATTTGT
TTTAGGCTCATGTTGGGCTGCAAGTTCGTTTGCTGCAATATATCTCTGTA
AGGTTTTTCTCAAGTTCTCGACAGTCCAAGGTTCTTCTGGTGGTTTTTGC
ATTTCGATCTGCTTGATGACGGATTCTGGAAATTTTCTTCGGATTAGAGT
GATATTCTGTCTTTGATCAATGTGTTCTCCTAGGGCTTCCAATGATCTTA
GGTGTTGTTCGATTGTATCGAAAGTTGATCTCAATGAATAGGTTCTATCA
GTTGCAACACCCAAGTCCGATAGCTTTGTATAATGGTTATCTATGATCAG
TTGCGTATTTCCATATCTCTCCTTCAAAATTTCGATAGCAACGTTATAGT
TTGTCTGTGTCAGCTCTAGTCCATTGATCGATTTTAGAGCTGTACCTTCT
AGCTGGGAGCGAAGATAGTTCAATTTATCTATCTTGCTAAGTGAGTCATT
CTTATCAATTGTTGCCTCAAAACTGTCCCAGAAGGCTTGCCATTTCAATA
TCTGTCCATTAAATCTTTTAAGCTCTAACTTTGGTAGTCGAACAGTTTGT
TGTTTCACAGTGTTCTTTTTCTCTAAAGCTGCAGTTGCGGTCGCAGTGGC
TGTGTCGGCTTTACACTTCTCCATCTGAACTTCAGACTCGATACGAAGTT
TCTCCAGTTGAAATTCTTGTTCTCGTCTCTTTTCCTCAGCTTCGAGTTGG
CGATTTTTCTCCTCAGCTTCGAGTTGGCGATTTTTCTCCTCAGCCTCTAG
TTGGCGAATCTTCTCTCGTTCCTCCCTCTCAAATTTCTCCTTGGTAGTCT
CGATGTAATGTTCCAAATCATCCAAGATGTCCTCAGCTTCGACTTGAAAG
TCTTGGTATTTGGTGACTTTCTCTTCATCTTTATTTTCAGATTTCTCGTA
CTCTTGAATGTCCTTTTCAAATTGTGCGTTTTTCTTGGCTACGGCATTTC
TAAGTCTGGTAAGCTCATTAACTTCGTAAATGTTCTCTTTTTCTTTGAGG
TATTTCTTTCCCTCTTCGATTTTCTCAAATAATCTCTGTTTTGATGTCTC
GATTCTCTTCGACGCCATAGTTTCAATTGTTTCTCTCGTTTACTCCTGTT
AATCCTTTGTAATAAAAGATATTCCTCTTGTTTAAGTTTCTTTTTTGAAA
GTTTCTCCTGTACCAATTAATATCTCCTTTTGACAAACTTTCTTGAATTT
AAATTATATAAATCCAAATGTTCCTTTATTATATGGTTCTTTATTTGTTA
ACGAAATTTCTCTCGCGATAACAAAATTTATCCTTGCTTTGTTTTCCTCT
GCGCTTGTTGAAGCGATTTTCCTCTTGAATCCATAAAACAACGAATTGAA
CCACCCTCTGCTACCATGTAATTATTGCGGCTATGATTCGATGTTTTAGG
AACCTAAATTGATTGAGAGTTCCTTATTGCTTGAATAGCGTATATCTTCT
TTATCACTAAAATTTAACTCTAAAATACCCTAGAAATATTCCCTACTTAT
ATACTACTTCAAAAACTGCTGATATAATGAAAATCCTaaacaaagcaaaa
taaaagacctattgttcaaatataatgAAGATTTAGTACGTGTTCTACGT
CACGTTCAAGTCTGATGAGTTAGCGCTTTTAAACTTGCCAAACTCGTTTA
TGTACAATGAGAATTGCTGAGTTCAGTTTATGTAATGTACAAACGTGCTC
agattacgtcataaacaaCGTGTCgagaaatttcgaaatgtttctTCGTT
TCTTCTCTTTTCGAGAATGTTCTTTAAATGTTCAAATCGCATTCGCGACA
Coding sequence (CDS) from alignment at sc0002397:10611..12760 >TCONS_00040358 ID=TCONS_00040358|Name=TCONS_00040358|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0002397:10611..12760 (Clytia hemisphaerica)
TCGATGATGGTCAGTTTTCTTGCAATGGTAACACGGTTTTTGTCTCCTAC
ATCTTCCTTGGTGGTTTTTTAAGCATATGAAGCACTTCCCCTTCAACTTC
TCCTTTCTTTCCTTGACGGTTGGAACAGTTTTGCACTNTTGTCTCCTACA
TCTTCCTTGGTGGCTTTTTAAGCATATGAAGCACTTCCCCTTCAACTTCT
CTTTTCTTTCCTTGACGGTTGGAACAGTTTTGCACTCGTCGTTCCAATGT
CCCTTTCCACAAAATATGCATTTCAAGGTGCGTTGTCTGGTGTTGGAGAA
CATGGTTCCATCTCTGTAGTCGGGTCGACGGTTGCCCTGATGATTTGTTT
TAGGCTCATGTTGGGCTGCAAGTTCGTTTGCTGCAATATATCTCTGTAAG
GTTTTTCTCAAGTTCTCGACAGTCCAAGGTTCTTCTGGTGGTTTTTGCAT
TTCGATCTGCTTGATGACGGATTCTGGAAATTTTCTTCGGATTAGAGTGA
TATTCTGTCTTTGATCAATGTGTTCTCCTAGGGCTTCCAATGATCTTAGG
TGTTGTTCGATTGTATCGAAAGTTGATCTCAATGAATAGGTTCTATCAGT
TGCAACACCCAAGTCCGATAGCTTTGTATAATGGTTATCTATGATCAGTT
GCGTATTTCCATATCTCTCCTTCAAAATTTCGATAGCAACGTTATAGTTT
GTCTGTGTCAGCTCTAGTCCATTGATCGATTTTAGAGCTGTACCTTCTAG
CTGGGAGCGAAGATAGTTCAATTTATCTATCTTGCTAAGTGAGTCATTCT
TATCAATTGTTGCCTCAAAACTGTCCCAGAAGGCTTGCCATTTCAATATC
TGTCCATTAAATCTTTTAAGCTCTAACTTTGGTAGTCGAACAGTTTGTTG
TTTCACAGTGTTCTTTTTCTCTAAAGCTGCAGTTGCGGTCGCAGTGGCTG
TGTCGGCTTTACACTTCTCCATCTGAACTTCAGACTCGATACGAAGTTTC
TCCAGTTGAAATTCTTGTTCTCGTCTCTTTTCCTCAGCTTCGAGTTGGCG
ATTTTTCTCCTCAGCTTCGAGTTGGCGATTTTTCTCCTCAGCCTCTAGTT
GGCGAATCTTCTCTCGTTCCTCCCTCTCAAATTTCTCCTTGGTAGTCTCG
ATGTAATGTTCCAAATCATCCAAGATGTCCTCAGCTTCGACTTGAAAGTC
TTGGTATTTGGTGACTTTCTCTTCATCTTTATTTTCAGATTTCTCGTACT
CTTGAATGTCCTTTTCAAATTGTGCGTTTTTCTTGGCTACGGCATTTCTA
AGTCTGGTAAGCTCATTAACTTCGTAAATGTTCTCTTTTTCTTTGAGGTA
TTTCTTTCCCTCTTCGATTTTCTCAAATAATCTCTGTTTTGATGTCTCGA
TTCTCTTCGACGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040358-exon-sc0002397-1491911889:10611..12760 | TCONS_00040358-exon-sc0002397-1491911889:10611..12760 | Clytia hemisphaerica | exon |
| TCONS_00040358-exon-sc0002397-1510915933:10611..12760 | TCONS_00040358-exon-sc0002397-1510915933:10611..12760 | Clytia hemisphaerica | exon |
| TCONS_00040358-exon-sc0002397-1575043694:10611..12760 | TCONS_00040358-exon-sc0002397-1575043694:10611..12760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0002397 | supercontig | sc0002397:10611..12760 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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