|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040349 ID=TCONS_00040349|Name=TCONS_00040349|organism=Clytia hemisphaerica|type=transcript|length=1334bp
taagtgcgaaaaaaagactgggacggttttagggtggtcaATGCGAACAA
caaaatgcccgcgcggtaattggcGGCTATGGTCAAAAAGGTTTATTGTG
AAGAGACAATTTACAAGAAAATCTCTATCCTTATGTTCAGATTTTCGGAG
GCAAACAAACGGGACCTGGTTACGACTGGACTGGTCAAATAATCGCCATC
CCCTTGCGTCAACTGTGAAGGTTCAACCATTCATGAAATTTTACATACTC
TTGGTTTCGTGCATACTCATCAACGTTCAGATCGTGATAACTACGTCACT
ATCAACAATGCTAATATTCAACCTGGCAGACAGAGTAACTTTGACATCGT
CCCTATGGCAAACACTGGATCTTTCGACTATGATAGTATTATGGCTTACA
AAGGAGAGGCGTGGTCTTCAAATGGAGGTATCACCATTCAAGCAACCGAC
GCATCGAAGCAAGACAACATGGGTCAAAGAAATGGTCTTTCTGTTGGAGA
TATACAGAAAATCAATGCTTTATACAACTGTTAAAAAGAATGacttatac
accttttcgaccgtagccgccaattgccgcgcgggtattttttgtccgtt
ttatcccattaaaactgtcccagtccttttttcgcacctatagacaatag
aaaactgtgtcaaaaaaggattggatcgagtttagggggatagtCAGATA
ATTAAGTTACAGCaacctgaccgcgcgactacggttgaAAAGATGTATTC
ATGGATATACATTAGTTGAGATTACGTCATCTTTACTAACAGAAATATCC
GGAAAAAACAGATTGTACTTTGATGAATTCCGGTTTATTTCGGATGTTTC
TGAGATGCAAAAATGTTGTGATCTTGACTCGTACATATCGAGAATTTGTG
TTTGGTATCGCTCGCAAGGCAACGTGGATTAAAGGTCCATTTAATGTTAT
ATATGGATGTGAATGATGTTGAATCGACTGCATTGTTTAAAAAAGGTTCG
GGGATATCATTGAGGTATTTTTTAACACCAACAGAGTCtgtcaaaatgtt
cttaaaagcAAAATAGATAGATTTGACCAATAATTTGAAAGAGACAATTA
TAAGGAAGTTTTAGCAGTTGTTAGACAAAATCGGTGTTTGTCGCTATTTA
AAGGGTGGTGGATTTTCTAATTTATTACTATTTGTTTATTTATGGAAATA
TATGCAGTCTGTAAGGAATTAAATTGAATGTCATTATTCGGTCCCAGACC
CCCCCCACGTGTCCCATGTTTAATTAACTCTAGAACGAAATTCCCTCATT
CCAGTCGCTGAGCTCGGGAAGACATACTTTATCG Run BLAST on NCBI transcript from alignment at sc0002396:13413..18624- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040349 ID=TCONS_00040349|Name=TCONS_00040349|organism=Clytia hemisphaerica|type=transcript|length=5212bp|location=Sequence derived from alignment at sc0002396:13413..18624- (Clytia hemisphaerica)
TAAGTGCGAAAAAAAGACTGGGACGGTTTTAGGGTGGTCAATGCGAACAA
CAAAATGCCCGCGCGGTAATTGGCGGCTATGGTCAAAAAGGTTTATTGTG
AAGAGACAATTTACAAGAAAATCTCTATCCTTATGTTCAGATTTTCGGAG
GCAAACAAACGGGACCTGGTTACGACTGGACTGGTCAAATAATCGCCATC
CCCTTGCGTCAACTGTGAAGGTAACGTGTAATTCTTTTTAAATGATTTTC
TTTTTTAGACAGACAGACAGACAGACAGACAGAGTCGATATATCACGTGG
ATACTCTAGTAATTTAGGACTTTTAGTCAGTCTTTTGATTGTTTTCATGT
TGTCCACCGCCAACGTACTCGACTATCTATGAACTGAATGGAACATTGGA
AGTAGCGACTGCGATCCTTGAAACCTTCCTTTTATCCCTTTCCGTGCCGA
TGTCGGCATATGCCGACATGAGCATTTTTGATTTCCTTCTTGCCATTGTC
GGGATTTGCCGACATGCGAAATTTCGACCTATTTGCCGTAAATTTATCAT
TTTTTACAAGACTTTAGTATTAGGTGGTTTGAAATGAAAAAAATGAATAG
TTACAAACTTTTCTATGATGAAAAATAACTATTCTACAATGTTCAACTCA
AAATTATAGTTGGCTAATACTTCTTCATATATTATTCAGAAAATGAAGTG
AAAATCGCTACTGTTTACCCATGTCGGCATATGCCGACATTCGCAAATAG
GTCGAACCTTTTTTTTTCCGTGGCAAATAGGTCGAACCTTAAAAAATACG
AACGGCAGTTCAAGGGTTATATAGAAAGGAATTACTCTTCTAATACTGAA
TAAGCAGAATAATTAAAAGAATTTTCCGAAATTTCTGATCGTGCGGCGCC
GAAAGTTGCTCTTCCTTTTTTTTTAAACTGCTTAGTAAGCATAAGATACG
TAAAATGATGTCCTTTAAAATATAATTATCCTTTTTTTCCTATCAAAATG
TCGGAAAGGTATTTCATGATTTCTTTGTTAGGCCTCTTTTTTATTTTTCC
TATTATCAACACTAGCCTTGGCCAGCCCCCTCAAAACGTTTCACTTTTTT
TTCAAAATACCAGGGAACAAGCTTTGACCATTGATTTTAGTCAATTTGAG
GGTGCTGATTTGGAGTTTTGGCGTAATTTGCGACACTTTACGTTTTTAGA
CAAAATTGTTTATTTTTAATAAAAGAATGTATTTCCAAGAGCGTTACTAG
TAGTTGACTGGATCTAAAAACGTAAAATGTGAATGTTTTGATGTAATTTC
TTCCTAAAGGAAATGAAAAACAAAATCCCCTATTAATAAATCTAAACACT
GAAAAAATAATTTAAAATCTTACATTTGTATATACAAGAACAAAGTCCTC
TCAGGGTAGATTCGTTTGGGACCTGCTTCCTCTGACACACACATGAAGAC
AGATCTGAGGATGAGAAAAGAACATTTATATTTCACCACACTGATGAATT
CACTGTATCTCTGATAGGTGTTTCTGGCAATTTTGTCAGCAATATGCTTA
TGAAAAGTCGAGCATTCCTTTTCCATCACACCTGTTAAGGAGAAAATTAA
TGGCGGGAAGGTTCTTGTTCGACGTTCGTGATCCTGTTGTTGTACTGGCG
TTTCTTTTGTCGCTCACACGGATGTCACAATAAGTATTTTGGCGCTGGCC
TCCAGACTCCTTTGGTTCGGGTCTTCAGGGGGTCTTCAAAATCAAAAAAG
ACTACGTGACTCGAGCTATTCAAACTGAGCAAAAAAATGTATTACATCAA
AGTCTGAGCTCTAGTTTAGACGGCCCACTTTTTGCCCTGCCTATTCTAAT
TGTGAATTAAAGAGGGCATAAAGTGGGCTGTCTAAAGTGATGCATAGCCC
TCTTTTGACGTCAATGCAATGTCTTCTTTCAAACCTTTCCAAGCAAAGAT
TTTAACAACCAGCTTTGTGCCCTCTTTCTGCCTACTCTAACAATTAGAAT
AGGCAGGGCAGAAAGTCGGCCGTCTAAACTAGAGCTGAACTTTTTTAGAT
CAAAATTTATGGGCGTTTTTGTGGTAAAAATAGTGACATTGTGAAAGGGG
CTGAACCATTGAGTTTAAAGCCCGAAGGGCTACAGTAGTATCTCTAACCT
TTCCTAGGCAAGAAAAAGTCAAGCCACTTATCGCATCCAGAAGGCGCCTA
AACGCCCCGTAATCATGACGACGGATTGTATCTAGTTCCTTTGTTTTTTA
AGGACTGCATTTTTTGAAATCTAGCGATTTGTGCGATTTGTATAAAAACC
CCGCGCGGGCGTTCTGGATGGGAAATAAGTGGTCTAAGTCTCGTCTAGCC
CTTTGTTCGGGCTTGGAGGTCAATGGATGTGGACCCTTCAGTTTTTTGAC
ATTTCTCAGCACCTATTCATGATATGCTAAAAGATTATACAACGTTGGAA
AGATATAATTGAGGAGAATTACATTTAAGACAATGAAGAAGAAAAATGAA
GTAAAGTATCGAATCTAGCAATTCCTTTGTTTTCGAGTGATATCTTTTTC
GAAATTGACAGATTGAAACTAAAATTGACCTCTCAATTTCGAAAAAGATA
TCACTCGAAAAAAAAGGAATTGCTAGATTCAATCCGTCATAAAAAATACG
GCGTATATTTTAAGGCTTCACTTTTTCTTGCCTAAGAAAGATTAAAGATT
CTCCTCTAGCCCTTCGGGCTTTAAACTCAATGCTCGTCCCTCGTGGTCTA
AGGGTTAAATTGTTCTTTTTGCTTTTCAGGTTCAACCATTCATGAAATTT
TACATACTCTTGGTTTCGTGCATACTCATCAACGTTCAGATCGTGATAAC
TACGTCACTATCAACAATGCTAATATTCAACCTGGTATGTACTGAGGCTA
TTTGCATCTTTTTACCTCACAGTATATAGTCCCCAAAACGCCCCCAAATT
TTTGGACAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGT
TAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACACGTCATCT
CTATCACTTCAAATGACCAATTAATCAAGTATCTTGTAAAAACTCCAGCT
CATCCCCAAATTTTGCCCACTGGTGCAAATGGCAATACCTAAAATGTGAT
GGAGTTAGATTTACGAGGAAATTTCTTTCCGACCGAAAATGTGCCGGAAA
AAACGGTTTTTTACCATTTCTTGAGATTTCATTTGTTTTTCTGATTATTT
GCACAAAGATAATTAGTATTAGCAATACCAAAAATGTGGCCAAGTCCGAT
TTTTGAGAAAAAGGTTTTTACGGCCGAAAATGCGGGGGAAAATATTAAAA
TTCCGCTGTACCATTTTTTGACTTTTGTCCCTTGAGAGTGTTACCAATCA
GGATACAACTAATATTATTATTTCATGCTTATTTTTTTCAGGCAGACAGA
GTAACTTTGACATCGTCCCTATGGCAAACACTGGATCTTTCGACTATGAT
AGTAAGTGATAATCGCCTTCTTGAGTAGCCTGGAGTCCATTTAAGGCTTT
TTGATAGATTTAATGGCCCGGCAGCTCTTACTTCAATTATGAGAATTGCT
TAGGCGGGCCTGTAAAAATAGGATTAAGCAATATTTTGGTTTTAAATACT
GAGAAGCGAGACAGGGGTAAAGGCCGGTCTCCAATTTCGCGCTACATGAG
CGAAAACTTTTTGACGTTTTTGTAATGTCATTGGTCCGTTGAAAAATGAA
GCAATTCCATTGGTCGAAATTGACGTAACGGATGAAAAAAGTAGAACTAC
CTTCAACTTTTTTTTTGTTCGCGCGAAACTTTTTTATGACGTAATCTTTT
CTTCAGGCAAAAAAGGTTAAGAAAAAAATTGTCGCCCATTTCGCACGAAA
GTGTAGACTGGCCTCAAGTCAAGATTAATTTCGCGAGCAAAAAAAAAAAT
TCACGAAATATTCTGGATTTATTATCGTGTAGCATTTTCTTTTTAATATT
TCGTGATGATTTAATTTCGTGAATCATCCAAACAAATATCATTTGAAAAT
GGTTTTCCCTGAAAGCGCCAACTTTTGTTGTGAATAATGAATGTTTTAAG
CTTTGTTTTATGAATTTAATTTTGAAAATTTTGAGAGTCAACAATTTCAT
GCGAATTTCGCAAAATCGCAAAATTTAATTTCGCAAAAATTAACTTGCTT
AGAGTACCAAGTTGAGACAGAGCTGTATGTCAACAAGGAACACCTTTTTA
TTCTTTTGTTTAGGTATTATGGCTTACAAAGGAGAGGCGTGGTCTTCAAA
TGGAGGTATCACCATTCAAGCAACCGACGCATCGAAGCAAGACAACATGG
GTCAAAGAAATGGTCTTTCTGTTGGAGATATACAGAAAATCAATGCTTTA
TACAACTGTTAAAAAGAATGACTTATACACCTTTTCGACCGTAGCCGCCA
ATTGCCGCGCGGGTATTTTTTGTCCGTTTTATCCCATTAAAACTGTCCCA
GTCCTTTTTTCGCACCTATAGACAATAGAAAACTGTGTCAAAAAAGGATT
GGATCGAGTTTAGGGGGATAGTCAGATAATTAAGTTACAGCAACCTGACC
GCGCGACTACGGTTGAAAAGATGTATTCATGGATATACATTAGTTGAGAT
TACGTCATCTTTACTAACAGAAATATCCGGAAAAAACAGATTGTACTTTG
ATGAATTCCGGTTTATTTCGGATGTTTCTGAGATGCAAAAATGTTGTGAT
CTTGACTCGTACATATCGAGAATTTGTGTTTGGTATCGCTCGCAAGGCAA
CGTGGATTAAAGGTCCATTTAATGTTATATATGGATGTGAATGATGTTGA
ATCGACTGCATTGTTTAAAAAAGGTTCGGGGATATCATTGAGGTATTTTT
TAACACCAACAGAGTCTGTCAAAATGTTCTTAAAAGCAAAATAGATAGAT
TTGACCAATAATTTGAAAGAGACAATTATAAGGAAGTTTTAGCAGTTGTT
AGACAAAATCGGTGTTTGTCGCTATTTAAAGGGTGGTGGATTTTCTAATT
TATTACTATTTGTTTATTTATGGAAATATATGCAGTCTGTAAGGAATTAA
ATTGAATGTCATTATTCGGTCCCAGACCCCCCCCACGTGTCCCATGTTTA
ATTAACTCTAGAACGAAATTCCCTCATTCCAGTCGCTGAGCTCGGGAAGA
CATACTTTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040349-exon-sc0002396-1575043694:18405..18624 | TCONS_00040349-exon-sc0002396-1575043694:18405..18624 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1575043694:15741..15845 | TCONS_00040349-exon-sc0002396-1575043694:15741..15845 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1575043694:15124..15183 | TCONS_00040349-exon-sc0002396-1575043694:15124..15183 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1575043694:13413..14361 | TCONS_00040349-exon-sc0002396-1575043694:13413..14361 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1510915933:18405..18624 | TCONS_00040349-exon-sc0002396-1510915933:18405..18624 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1510915933:15741..15845 | TCONS_00040349-exon-sc0002396-1510915933:15741..15845 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1510915933:15124..15183 | TCONS_00040349-exon-sc0002396-1510915933:15124..15183 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1510915933:13413..14361 | TCONS_00040349-exon-sc0002396-1510915933:13413..14361 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1491911889:18405..18624 | TCONS_00040349-exon-sc0002396-1491911889:18405..18624 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1491911889:15741..15845 | TCONS_00040349-exon-sc0002396-1491911889:15741..15845 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1491911889:15124..15183 | TCONS_00040349-exon-sc0002396-1491911889:15124..15183 | Clytia hemisphaerica | exon |
| TCONS_00040349-exon-sc0002396-1491911889:13413..14361 | TCONS_00040349-exon-sc0002396-1491911889:13413..14361 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002396 | supercontig | sc0002396:13413..18624 - |
Blast
BLAST of TCONS_00040349 vs. Swiss-Prot (Human)
Match: TLL1 (Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.543e-16 Identity = 48/118 (40.68%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 211 NCE--GSTIHEILHTLGFVHTHQRSDRDNYVTINNANIQPGRQSNFDIVPMANTGS----FDYDSIMAYKGEAWSSNGGITIQATDASKQDN-----MGQRNGLSVGDIQKINALYNC 531
NC+ G +HE+ H +GF H H R DRDN+VTI NIQPG++ NF + S +D+DSIM Y +S G+ + S+ DN +GQR LS GDI + LY C
Sbjct: 231 NCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSR--GMFLDTILPSRDDNGIRPAIGQRTRLSKGDIAQARKLYRC 346
The following BLAST results are available for this feature:
|
