TCONS_00040336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040336
Unique NameTCONS_00040336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040336 ID=TCONS_00040336|Name=TCONS_00040336|organism=Clytia hemisphaerica|type=transcript|length=836bp
NCCCAAAACAAGACAATGGTTGCAGACTGACCAGACAACGTAACAATAAA
AGGGAGGAAATaaccaataaaaaaaaaaagataaatcctAAATATGATGA
AATCTAAATTAATTAAACGACTATATACAACTATCTAGCCACTGGTAGTT
CTATTGATATTCTTACTTGCCAATAACCTAGTAccattaaaaatgaagaa
gttacagaaaaagaaaaacacaaaaaaataaataacttgTGCCTGCAGCA
CGCCACCAAAGCACTGAGCGTTGTGAGAGGTAGTGACGAAAAAAACTTGC
CCTGTACCACGTTATCCAAGCAACTACCTGTCATAGTCTATTAGAAAACG
AACTCAGCCTGCGATATAATACAAACTATGATGATCTTGCCAGATTTCCA
GCCCACCATATTGAGGGCTGAAACCCAACTACCACCTAGCTATCTGGGAA
CCAGGTACCCCTAAATTCccttaaaatttcaattaaataaTTCCAGTCTA
AAGTAATACAATGAATGTAACTtaaaaatcttagaaaaatccctaggaaa
cgATAAAACCTATATCACACAATACACTCACACATCGACCTCAGAGTCAC
TTTTAGGGTTGAAACCAGACCGCCGTCAAGGTTTCTGAGAGAACCGAACC
GCCGTTCGAAATTCCCTCAAAGAAATGACTCCCCTTGAGTAGGACCCGAC
CTGAGACACTTTTAGGGTTGAAACCCGACCGCCGTCAAGGTTTCTGAGAG
AACCGAACCGCCGTTCGAAATTCCCTCAAGAAGTGACTCCCCTTAATAGG
ACCCGACCTGAGACACTTTTATGGTTGAAACCAAGC
Run BLAST on NCBI

transcript from alignment at sc0002393:22365..30203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040336 ID=TCONS_00040336|Name=TCONS_00040336|organism=Clytia hemisphaerica|type=transcript|length=7839bp|location=Sequence derived from alignment at sc0002393:22365..30203- (Clytia hemisphaerica)
NCCCAAAACAAGACAATGGTTGCAGACTGACCAGACAACGTAACAATAAA
AGGGAGGAAATAACCAATAAAAAAAAAAAGATAAATCCTAAATATGATGA
AATCTAAATTAATTAAACGACTATATACAACTATCTAGCCACTGGTAGTT
CTATTGATATTCTTACTTGCCAATAACCTAGTACCATTAAAAATGAAGAA
GTTACAGAAAAAGAAAAACACAAAAAAATAAATAACTTGTGCCTGCAGCA
CGCCACCAAAGCACTGAGCGTTGTGAGAGGTAGTGACGAAAAAAACTTGC
CCTGTACCACGTTATCCAAGCAACTACCTGTCATAGTCTATTAGAAAACG
AACTCAGCCTGCGATATAATACAAACTATGATGATCTTGCCAGATTTCCA
GCCCACCATATTGAGGGCTGAAACCCAACTACCACCTAGCTATCTGGGAA
CCAGGTACCCCTAAATTCCCTTAAAATTTCAATTAAATAATTCCAGTCTA
AAGTAATACAATGAATGTAACTTAAAAATCTTAGAAAAATCCCTAGGAAA
CGATAAAACCTATATCACACAATACACTCACACATCGACCTCAGAGTCAC
TTTTAGGGTTGAAACCAGACCGCCGTCAAGGTTTCTGAGAGAACCGAACC
GCCGTTCGAAATTCCCTCAAAGAAATGACTCCCCTTGAGTAGGACCCGAC
CTGAGACACTTTTAGGGTTGAAACCCGACCGCCGTCAAGGTTTCTAAGAG
AACCAAACCGCCGTCTGAAATTCCCTCAAAGAAGTGACTCCCCTTGAGTA
GGACCCGACCTGAGACACTTTTAGGGTTGAAACCCGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATACCGCATGAATTTA
GCATAATTATTGACATAAACAGTGACGTCATGAGAAAAGTTTCAAAAAAA
TGTTTTCCCTCCTATTTTGATACGGTGCAAGTTTTTGCCATCTATAATGC
CAAATGAAACTTTCGCTCCTAGTGAATGGTGGTTGGACTGAGTGGGCAGC
ATGGGATGCATGTACTGCAACCTGTGGTACAGGGACACAAGCACGGACAA
GAACTTGTACAAACCCAACACCTGCTAATGGAGGAGATACTTGTACTGGA
GATGCATCGGAATCACAAGATTGCAATACCGAAACTTGTCCCGTCGAACC
AGGTAACTATTTTGTTAAACATCAAGAATTTAAGAAAACATCTCAAAAGT
TTTGCAAATGAATAAGTGACATATTTGAAGTGAGTTTCAAAGAGTCTTTG
CCAACTTTGCTCATTTCTTTTGCCTTTTGTGGTGGCACATGGGGAAAATC
CTCAATTTCAAAGTTAAGCTTGAAAGACTTCATGTAGGTTGATCTTGTCT
GGAAGCCGCTCGACCCCTCTCAAATCAAAGAATCCAATAAAACAAAGTGA
AATTACTGAAACTGCAATTCTTGCCCGAACCTTCAATTGTATAAAACGTT
AAGATAAACAAAATTGCCAATAAACTTCGGCACCGATTGTACAGATATCA
TTGTTAGCAGATACTGCATGAATTTAGAATAATTATTGACATAAATAGTG
ACTACATCAGAAAAGTTTCAAAGAAATGTTTTTTCCTCCTATTTTGATAC
GGTGCAAGTTTTTGCCATCTAAAATGCCAAATGAAACTTTCGCTCCTAGT
GAATGGTGGTTGGACNTTTGCCCGAACTGTTAATTCTATAAAACGTTAAG
ATAAACAAAATTGCCAATAAACTTCGGCACCGATTGTACAGATATCCTTG
TTAGCAGATACCGCATGAATTTAGCATAATTATTGACATAAACAGTGACG
TCATGAGAAAAGTTTCAAAAAAATGTTTTCCCTCCTATTTTGATAAGGTG
CAAGTTTTTGCCATCTATAATGCCAAATGAAACTTTCGCTCCTAGTGAAT
GATGGTTGGACTGAGTGGGCAGCATGGGATGCATGTACTGCAACCTGTGG
TACAGGGAAACAAGCACGGACAAGAACTTGTACAAATCCAACACCTGCTA
ACGGAGGAGATACTTGTACTGGAGATGCATCGGAATCACAAGATTGCAAT
ACCGAAACTTGTCCCGTCGAACCAGGTAACTATTTTGTTAAACATCAAGA
ATTTAAGAAAACATCTAAAAAGTTTTGCAAATGAATGAGTGACATATTTG
AAGTGAGATTCAAAGAGTCTTTGCCAACTTTGCTGATTTCTTTTGCCTTT
TGTGGTGGCACATGGGGAAAATCCTCAATTTCAAAGTTAAGCTTGAAAGA
CTTCATGTAGGTTGATCTTGTCTGGAAGCCGCTCGACCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTAGCAGATA
CCGCATGAATTTAGCATAATTATTGACATAAATAGTGACGTCATCAGAAA
AGTTTCAAAAAAATGTTTTCCCTCCTATTTTGATACGGTGAAAGTTTTTG
CCATCTATAATGCCGAATGAACTTTCGCTCCTAGTGAATGGTGGTTGGAC
TGAGTGGGCAGCATGGGATGCATGTACTGCAACCTGTGGTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTACCGAAACTTGTCCCGTCGAACCAGGTAACTATT
TTGTTAAACATCAAGAATTTAAGAAAACATCTCAAAAAAGTTTTGCAAAT
GAATGAGTGACGTATTTGAAGCGAGTTTCAAAGAATTTTTGCCAACTTTG
CTCATTTCTTTTGCCTTTTGTGGTGGCACATGGGGAAAATCCTCAATTTC
AAAGTTAAGCTTGAAAGACTTCATGTAGGTTGATCTTGTCTGGAAGCCGC
TCGACCCCTCTCAAATCAAAGAATCCAAAAAACAAATTACTGAAACTGCA
ATTCTTGCCCGAACTTTTAATTCTATAAAACGTTAAGATATCCAAAATTG
CCAATAAATTTCCGCACCGATTGTACAGATATCCTTGTTAGCAGATACCA
CATTAATTTAGCATAAGTATTGACATAAATAGTGACGTCATCATCAAAAG
TTTCAAAAAAATGTTTTTTCCTCCTATTTTGATACGGTGAAAGTTTTTGC
CATCTAAAATGCCAAATGAACTTTCGCTCCTAGTGAATGGTGGTTGGACT
GAGTGGGCAGCATGGGATGCATGTACTGCAACCTGTGGTACAGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTACTGCAACCTGTGGTACAGGGAC
ACAAGCACGGTCAAGAACTTGTACAAATCCAACACCTGCTAACGGAGGAG
ATACTTGTACTGGAGATGCATCGGAATCACAACATTGCAATACCGAAACT
TGTCCCGTCGAACCAGGTAACTATTTTGTTAAACATCGAGAATTTAAGAA
AACATCTCAAAAGTTTTGCAAATGAATGAGTGACGTATTTGAAGTGAGTT
TCAAAGAATCTTTGCCAACTTTGCTCATTTCTTTTGCCTTTTGTGGTGGC
ACATGGGGAAAATCCTCAATTTCAAATTTAAGCTTGAAAGACTTCATGTA
GGTTCATCTTGTCTGGAAGCCGCTCGACCCCTCTCAAATCAAAGAATCCA
ATAAAACAAATTACTGAAACTGCAATTCTTGCCCGAACTTTTAATTCTAT
AAAACGTTAAGATATCCAAAATTGCCAATAAACTTCGGCACCGATTGTAC
AGATATCTTTGTTAGCAGATACCGCATGAATTTAGCATAATTATTGACAT
AAATAGTGACGTCATCAGTAAAGTTTCAAAAAAATGTTTTTTCCTCCTAT
TTTGATACGGTGCAAGTTTTTGCCATCTAAAATGCCAAATGAACTTTCGC
TCCTAGTGAATGGTGGTTGNNGTGTTAAACATCAAAAATTTAAGAAAACA
TCTCAAAAGTTTTGCAAATGAATGAGTGACGTATTTGAAGTGAGTTTCAA
AGAATCTTTGCCAACTTTGCTCATTTCTTTTGCCTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAACACAGT
GAAATCACTGAAACTGCAATTCTTGCCCGAACTTTTAATTCTATAAAACG
TTAAGATATCCAAAATTTCCAATAAATTTCGGCACCGATTGTACAGATAT
CCTTGTCAGCAGATACAACATGATTTTAGCATAATTGTTGACATAAATAG
TGACGTCATCAGTAAAGTTTCAAAAAAATGTTTTTTCCTCCTATTTTGAT
ACGGTGCAAGTTTTTGCCATCTAAAATGCCAAATGAACTTTCTCTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAGAA
ATTAAAACGATATATATTTCCCGTTTATAAGAATAGCAAACAGGGAGAAA
ATAACCCTACATAGGGTTTACAGCTAATAATGGCGATAGCCTACCCATCT
GCGGTATTCAAAAATAACTATCTCTGCCCGTCTTTGTGTATTATCTCCAT
ACTACTGGGCCACTTTAATCCTGTCATCAGTCTATAAAAAAAGCTTTGAG
TGGACCCCGGGCTAGATCTTTGCATGATTAAATCTTTCTTTTTGTTTTCA
TATTAAATCTGTGTTTAATTTCCAAATTCGTTCATCTGTTTGGAGGGGAG
TAGAATAGATTGAGACATTTTTCAATTAAGTTTGGCGTTCACATATTTGG
CTAACCCATAATCANNNNNNTAATCAGTTTTGGGGAAAATTTAGTCCCCT
GCTAGTGATAAACTAACATAAACTAGAAATAGGGTTGCCGGCAACCAATA
TCTGTAGGGCGGGAGGGAGGTAAAAAAATTCTGAGACTTGAACACCGCCA
CCTTAATCCTTGTTTGTGCTTTGAGAGTATAGCCAATATCGCACGGAACC
AAGTGAGAAGTAAGGCTACTCGCAGGCGGGACGCCCCGGTAGTATCGCAG
GCGGAATAAGTGATTTAGACGATTTAAAATTAAACTACGATTTAACTACT
TATTGTTAAATAAACATTTAATTTCCAAATTCGTTCATCTGTTATGAGGG
GAGTAGAATAGATTGAGACATTTTTCAATTAAGTTTGGCGTTCACATATT
TGGCTAACCCATAATCAGTTTTGGGGAAAATTTAGTCCCAACCGAAGGTA
TCCCCAAAACAAGACAATGGTTGCAGACCAGACCGCCGTCAAGGTTTCTG
AGAGAACAGAACCGCCATTCGAAATTCCCTCAAACCAAAGAAGTGACTCC
CTTTGAGTAGGACCCGACCTGAGACACTTTTAGGGTTGAAACCAGACCGC
CGTCAAGGTTTCTGAGAGAACCGAACCGCCGTTCGAAATTCCCTCAAAGG
AGTGACTCCCCTTGCGTAGGAACCGACCTGAGACACTTTTAGGGTTGAAA
CCAGACCGCCGTCAAGGTTTCTGAGAGAACCGAACCGCCGTTCGAAATTC
CCTCAAAGGAGTGACTCCCCTTGCGTAGGAACCGACCTGAGACACTTTTA
GGGTTGAAACCAAGCCGCCGTCGAGGTAACCAGACCGCCGTCGAGGTAAC
CAGACCGCCGTCAAGGTTACCAGACGGCTGTCGAGGATTCTGAGAGAACC
GAACCGCCGTTCGAAATTCCCTCAAGAAGTGACTCCCCTTAATAGGACCC
GACCTGAGACACTTTTAGGGTTGAAACCAGACCGCCGTCAAGGTTTCTGA
GAGAACCGAACCGCCGTTCGAAATTCCCTCAAGAAGTGACTCCCCTTAAT
AGGACCCGACCTGAGACACTTTTATGGTTGAAACCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024500XLOC_024500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040336-exon-sc0002393-1575043694:29465..30203TCONS_00040336-exon-sc0002393-1575043694:29465..30203Clytia hemisphaericaexon
TCONS_00040336-exon-sc0002393-1575043694:22365..22461TCONS_00040336-exon-sc0002393-1575043694:22365..22461Clytia hemisphaericaexon
TCONS_00040336-exon-sc0002393-1510915933:29465..30203TCONS_00040336-exon-sc0002393-1510915933:29465..30203Clytia hemisphaericaexon
TCONS_00040336-exon-sc0002393-1510915933:22365..22461TCONS_00040336-exon-sc0002393-1510915933:22365..22461Clytia hemisphaericaexon
TCONS_00040336-exon-sc0002393-1491911889:29465..30203TCONS_00040336-exon-sc0002393-1491911889:29465..30203Clytia hemisphaericaexon
TCONS_00040336-exon-sc0002393-1491911889:22365..22461TCONS_00040336-exon-sc0002393-1491911889:22365..22461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002393supercontigsc0002393:22365..30203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23029	1.84705	2.22181	1.3058	27.3187	23.1823	24.1827	22.6426	14.7779	19.7545	17.0106	19.0442	16.999	26.4626	20.1781	16.8738	18.4517	18.5112	6.30663	8.45647	25.7313	26.9053	8.44186	9.54962	23.3815	25.9785	17.7972	17.4365	13.4085	10.6184
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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