TCONS_00040335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040335
Unique NameTCONS_00040335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040335 ID=TCONS_00040335|Name=TCONS_00040335|organism=Clytia hemisphaerica|type=transcript|length=1091bp
CCTCGACGGCGGTCTGGTTACCTCGACGGCGGCTTGGTTTCAACCCTAAA
AGTGTCTCAGGTCGGTTCCTACGCAAGGGGAGTCACTCCTTTGAGGGAAT
TTCGAACGGCGGTTCGGTTCTCTCAGAAACCTTGACGGCGGTCTGGTTTC
AACCCTAAAAGTGTCTCAGGTCGGTTCCTACGCAAGGGGAGTCACTCCTT
TGAGGGAATTTCGAACGGCGGTTCGGTTCTCTCAGAAACCTTGACGGCGG
TCTGGTTTCAACCCTAAAAGTGTCTCAGGTCGGGTCCTACTCAAAGGGAG
GGAGTCACTTCTTTGAGGGAATTTCAGACGGCGGTTTGGTTCTCTTAGAA
ACCTTGACGGCGGTCGGGTTTCAACCCTAAAAGTGTCTCAGGTCGGGTCC
TACTCAAGGGGAGTCATTTCTTTGAGGGAATTTCGAACGGCGGTTCGGTT
CTCTCAGAAACCTTGACGGCGGTCTGGTTTCAACCCTAAAAGTGACTCTG
AGGTCGATGTGTGAGTGTATTGTGTGATATAGGTTTTATcgtttcctagg
gatttttctaagatttttaAGTTACATTCATTGTATTACTTTAGACTGGA
AttatttaattgaaattttaaggGAATTTAGGGGTACCTGGTTCCCAGAT
AGCTAGGTGGTAGTTGGGTTTCAGCCCTCAATATGGTGGGCTGGAAATCT
GGCAAGATCATCATAGTTTGTATTATATCGCAGGCTGAGTTCGTTTTCTA
ATAGACTATGACAGGTAGTTGCTTGGATAACGTGGTACAGGGCAAGTTTT
TTTCGTCACTACCTCTCACAACGCTCAGTGCTTTGGTGGCGTGCTGCAGG
CAcaagttatttatttttttgtgtttttctttttctgtaacttcttcatt
tttaatggTACTAGGTTATTGGCAAGTAAGAATATCAATAGAACTACCAG
TGGCTAGATAGTTGTATATAGTCGTTTAATTAATTTAGATTTCATCATAT
TTaggatttatctttttttttttattggttATTTCCTCCCTTTTATTGTT
ACGTTGTCTGGTCAGTCTGCAACCATTGTCTTGTTTTGGGN
Run BLAST on NCBI

transcript from alignment at sc0002393:22608..30203+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040335 ID=TCONS_00040335|Name=TCONS_00040335|organism=Clytia hemisphaerica|type=transcript|length=7596bp|location=Sequence derived from alignment at sc0002393:22608..30203+ (Clytia hemisphaerica)
CCTCGACGGCGGTCTGGTTACCTCGACGGCGGCTTGGTTTCAACCCTAAA
AGTGTCTCAGGTCGGTTCCTACGCAAGGGGAGTCACTCCTTTGAGGGAAT
TTCGAACGGCGGTTCGGTTCTCTCAGAAACCTTGACGGCGGTCTGGTTTC
AACCCTAAAAGTGTCTCAGGTCGGTTCCTACGCAAGGGGAGTCACTCCTT
TGAGGGAATTTCGAACGGCGGTTCGGTTCTCTCAGAAACCTTGACGGCGG
TCTGGTTTCAACCCTAAAAGTGTCTCAGGTCGGGTCCTACTCAAAGGGAG
TCACTTCTTTGGTTTGAGGGAATTTCGAATGGCGGTTCTGTTCTCTCAGA
AACCTTGACGGCGGTCTGGTCTGCAACCATTGTCTTGTTTTGGGGATACC
TTCGGTTGGgactaaattttccccaaaactgatTATGGGTTAGCCAAATA
TGTGAACGCCAAACTTAATTGAAAAATGTCTCAATCTATTCTACTCCCCT
CATAACAGATGaacgaatttggaaattaaatgtttatttaACAATAAGTA
GTTAAATCGTAGTTTAATTTTAAATCGTCTAAATCACTTATTCCGCCTGC
GATACTACCGGGGCGTCCCGCCTGCGAGTAGCCTTACTTCTCACTTGGTT
CCGTGCGATATTGGCTATACTCTCAAAGCACAAACAAGGATTAAGGTGGC
GGTGTTCAAGTCTCAGAAtttttttacctccctcccGCCCTACAGATATT
GGTTGCCGGCAACCCTATTTCTAGTTTATGTTAGTTTATCACTAGCAGGG
gactaaattttccccaaaactgatTANNNNNNTGATTATGGGTTAGCCAA
ATATGTGAACGCCAAACTTAATTGAAAAATGTCTCAATCTATTCTACTCC
CCTCCAAACAGATGaacgaatttggaaattaaacACAGATTtaatatgaa
aacaaaaagaaagatttaatCATGCAAAGatctagcccggggtccactca
aagctttttttatagactgatGACAGGATTAAAGTGGCCCAGTAGTATGG
AGATAATACACAAAGACGGGCAGAGATAGTTATTTTTGAATACCGCAGAT
GGGTAGGCTATCGCCATTATTAGCTGTAAACCCTATGTAGGGTTATTTTC
TCCCTGTTTGCTATTCTTATAAACGGGAAATATATATCGTTTTAATTTCT
AGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GAGAGAAAGTTCATTTGGCATTTTAGATGGCAAAAACTTGCACCGTATCA
AAATAggaggaaaaaacatttttttgaaactttactgatgacgtcactat
ttatgTCAACAATTATGCTAAAATCATGTTGTATCTGCTGACAAGGATAT
CTGTACAATCGGTGCCGaaatttattggaaattttggatatcttaacgtt
ttatagaattaaaagttcgggcaagaattgcagtttcagtgaTTTCACTG
TGTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAGGCAAAAGAAATGAGCAAAGTTGGCAAAGATTCTTTGA
AACTCACTTCAAATACGTCACTCATTCATTTGCAAAacttttgagatgtt
ttcttaaatttttgatgtTTAACACNNCAACCACCATTCACTAGGAGCGA
AAGTTCATTTGGCATTTTAGATGGCAAAAACTTGCACCGTATCAAAATAg
gaggaaaaaacatttttttgaaactttactgatgacgtcactatttatgT
CAATAATTATGCTAAATTCATGCGGTATCTGCTAACAAAGATATCTGTAC
AATCGGTGCCGAAgtttattggcaattttggatatcttaacgttttatag
aattaaaagttcgggcaagaattgcagtttcagtaatTTGTTTTATTGGA
TTCTTTGATTTGAGAGGGGTCGAGCGGCTTCCAGACAAGATGAACCTACA
TGAAGTCTTTCAAgcttaaatttgaaattgaggATTTTCCCCATGTGCCA
CCACAAAAGGCAAAAGAAATGAGCAAAGTTGGCAAAGATTCTTTGAAACT
CACTTCAAATACGTCACTCATTCATTTGCAAAacttttgagatgttttct
tAAATTCTCGATGTTTAACAAAATAGTTACCTGGTTCGACGGGACAAGTT
TCGGTATTGCAATGTTGTGATTCCGATGCATCTCCAGTACAAGTATCTCC
TCCGTTAGCAGGTGTTGGATTTGTACAAGTTCTTGACCGTGCTTGTGTCC
CTGTACCACAGGTTGCAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTGTACCACAGGTTGCAGTACATGCATCCCATGCTGCCCACTCAGTC
CAACCACCATTCACTAGGAGCGAAAGTTCATTTGGCATTTTAGATGGCAA
AAACTTTCACCGTATCAAAATAggaggaaaaaacatttttttgaaacttt
tgatgatgacgtcactatttatgTCAATACTTATGCTAAATTAATGTGGT
ATCTGCTAACAAGGATATCTGTACAATCGGTGCGGAAatttattggcaat
tttggatatcttaacgttttatagaattaaaagttcgggcaagaattgca
gtttcagtaatTTGTTTTTTGGATTCTTTGATTTGAGAGGGGTCGAGCGG
CTTCCAGACAAGATCAACCTACATGAAGTCTTTCAAGCTTAACTTTGAAA
TTGAGGATTTTCCCCATGTGCCACCACAAAAGGCAAAAGAAATGAGCAAA
GTTggcaaaaattctttgaaactcGCTTCAAATACGTCACTCATTCATtt
gcaaaacttttttgagatgttttcttaaattcttGATGTTTAACAAAATA
GTTACCTGGTTCGACGGGACAAGTTTCGGTANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTACCACAGGTTGCAGTACATGCATCCCATGCTGCCCACTCAGTCC
AACCACCATTCACTAGGAGCGAAAGTTCATTCGGCATTATAGATGGCAAA
AACTTTCACCGTATCAAAATAGGagggaaaacatttttttgaaacttttc
tgatgacgtcactatttatgTCAATAATTATGCTAAATTCATGCGGTATC
TGCTAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGTCGAGCGGCTTCCAGACAAGATCAACCTACATGAAGTCTT
TCAAGCTTAACTTTGAAATTGAGGATTTTCCCCATGTGCCACCACAAAAG
GCAAAAGAAATCAGCAAAGTTGGCAAAGACTCTTTGAATCTCACTTCAAA
TATGTCACTCATTCATTTGCAAAACTTTTTAGatgttttcttaaattctt
GATGTTTAACAAAATAGTTACCTGGTTCGACGGGACAAGTTTCGGTATTG
CAATCTTGTGATTCCGATGCATCTCCAGTACAAGTATCTCCTCCGTTAGC
AGGTGTTGGATTTGTACAAGTTCTTGTCCGTGCTTGTTTCCCTGTACCAC
AGGTTGCAGTACATGCATCCCATGCTGCCCACTCAGTCCAACCATCATTC
ACTAGGAGCGAAAGTTTCATTTGGCATTATAGATGGCAAAAACTTGCACC
TTATCAAAATAGGagggaaaacatttttttgaaacttttctcaTGACGTC
ACTGTTTATGTCAATAATTATGCTAAATTCATGCGGTATCTGCTAACAAG
GATATCTGTACAATCGGTGCCGAAGTTTATTGGCAATTTTGTTTATCTTA
ACGTTTTATAGAATTAACAGTTCGGGCAAANGTCCAACCACCATTCACTA
GGAGCGAAAGTTTCATTTGGCATTTTAGATGGCAAAAACTTGCACCGTAT
CAAAATAGGaggaaaaaacatttctttgaaACTTTTCTGATGTAGTCACT
ATTTATGTCAATAATTATTCTAAATTCATGCAGTATCTGCTAACAATGAT
ATCTGTACAATCGGTGCCGAAGTTTATTGGCAATTTTGTTTATCTTAACG
TTTTATACAATTGAAGGTTCGGgcaagaattgcagtttcagtaatTTCAC
TTTGTTTTATTGGATTCTTTGATTTGAGAGGGGTCGAGCGGCTTCCAGAC
AAGATCAACCTACATGAAGTCTTTCAAGCTTAACTTTGAAATTGAGGATT
TTCCCCATGTGCCACCACAAAAGGCAAAAGAAATGAGCAAAGTTGGCAAA
GACTCTTTGAAACTCACTTCAAATATGTCACTTATTCATTTGCAAAactt
ttgagatgttttcttaaattcttGATGTTTAACAAAATAGTTACCTGGTT
CGACGGGACAAGTTTCGGTATTGCAATCTTGTGATTCCGATGCATCTCCA
GTACAAGTATCTCCTCCATTAGCAGGTGTTGGGTTTGTACAAGTTCTTGT
CCGTGCTTGTGTCCCTGTACCACAGGTTGCAGTACATGCATCCCATGCTG
CCCACTCAGTCCAACCACCATTCACTAGGAGCGAAAGTTTCATTTGGCAT
TATAGATGGCAAAAACTTGCACCGTATCAAAATAGGagggaaaacatttt
tttgaaacttttctcaTGACGTCACTGTTTATGTCAATAATTATGCTAAA
TTCATGCGGTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTCGGGTTTCAACCCTAAAAGTGTCTCAGGTCGGGTCCTACT
CAAGGGGAGTCACTTCTTTGAGGGAATTTCAGACGGCGGTTTGGTTCTCT
TAGAAACCTTGACGGCGGTCGGGTTTCAACCCTAAAAGTGTCTCAGGTCG
GGTCCTACTCAAGGGGAGTCATTTCTTTGAGGGAATTTCGAACGGCGGTT
CGGTTCTCTCAGAAACCTTGACGGCGGTCTGGTTTCAACCCTAAAAGTGA
CTCTGAGGTCGATGTGTGAGTGTATTGTGTGATATAGGTTTTATcgtttc
ctagggatttttctaagatttttaAGTTACATTCATTGTATTACTTTAGA
CTGGAAttatttaattgaaattttaaggGAATTTAGGGGTACCTGGTTCC
CAGATAGCTAGGTGGTAGTTGGGTTTCAGCCCTCAATATGGTGGGCTGGA
AATCTGGCAAGATCATCATAGTTTGTATTATATCGCAGGCTGAGTTCGTT
TTCTAATAGACTATGACAGGTAGTTGCTTGGATAACGTGGTACAGGGCAA
GTTTTTTTCGTCACTACCTCTCACAACGCTCAGTGCTTTGGTGGCGTGCT
GCAGGCAcaagttatttatttttttgtgtttttctttttctgtaacttct
tcatttttaatggTACTAGGTTATTGGCAAGTAAGAATATCAATAGAACT
ACCAGTGGCTAGATAGTTGTATATAGTCGTTTAATTAATTTAGATTTCAT
CATATTTaggatttatctttttttttttattggttATTTCCTCCCTTTTA
TTGTTACGTTGTCTGGTCAGTCTGCAACCATTGTCTTGTTTTGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024499XLOC_024499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040335-exon-sc0002393-1491911889:22608..22906TCONS_00040335-exon-sc0002393-1491911889:22608..22906Clytia hemisphaericaexon
TCONS_00040335-exon-sc0002393-1510915933:22608..22906TCONS_00040335-exon-sc0002393-1510915933:22608..22906Clytia hemisphaericaexon
TCONS_00040335-exon-sc0002393-1575043694:22608..22906TCONS_00040335-exon-sc0002393-1575043694:22608..22906Clytia hemisphaericaexon
TCONS_00040335-exon-sc0002393-1491911889:29412..30203TCONS_00040335-exon-sc0002393-1491911889:29412..30203Clytia hemisphaericaexon
TCONS_00040335-exon-sc0002393-1510915933:29412..30203TCONS_00040335-exon-sc0002393-1510915933:29412..30203Clytia hemisphaericaexon
TCONS_00040335-exon-sc0002393-1575043694:29412..30203TCONS_00040335-exon-sc0002393-1575043694:29412..30203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002393supercontigsc0002393:22608..30203 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15161	0.473772	0.415804	0.371401	10.3848	5.09474	10.5406	10.2898	2.95215	3.33259	3.39888	2.89317	3.91175	3.32722	2.8117	2.54588	3.61439	3.49346	1.73312	1.57995	8.81991	4.08361	2.40526	2.97822	9.54525	8.32273	6.0085	3.79589	2.43925	3.48583
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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