TCONS_00040333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040333
Unique NameTCONS_00040333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040333 ID=TCONS_00040333|Name=TCONS_00040333|organism=Clytia hemisphaerica|type=transcript|length=409bp
GTTCAACTCGTCGGTAAATTTCGAGAGCTTCTTTCGTTTTACCAGTTTCT
TGTAAGCAGTGCGCAATATTGTGTTGCGTTGTCAACACACTTGGATGATC
AGTGCCAAATGTTGTCAGCCGCTTCTGTTCAACTCGTCGGTAAATTTCGA
GAGCTTCTTTCGTTTTACCAGTTTCTTGTAAGCATTGCGCAATACTGTGT
TGCGTTGTCAACACACTTGGATGATCAGTGCCAAATGTTGTCAGCTGCTT
CTGTTCAACTCGTCGGTAAATTTCGAGAGCTTCTTTCGTTTTACCAGTTT
CTTGTAAGCAATGCGCAATACTATTTTGTGTTGTCAACACACTTGGATGA
TCATTGCCAAGTGTTGTCAGCTCCTTCTGTTCCACTCGTCGATAAATTTC
GAGAGCTTC
Run BLAST on NCBI

protein sequence of TCONS_00040333-protein

>TCONS_00040333-protein ID=TCONS_00040333-protein|Name=TCONS_00040333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
EALEIYRRVEQKELTTLGNDHPSVLTTQNSIAHCLQETGKTKEALEIYRR
VEQKQLTTFGTDHPSVLTTQHSIAQCLQETGKTKEALEIYRRVEQKRLTT
FGTDHPSVLTTQHNIAHCLQETGKTKEALEIYRRVE
Run BLAST on NCBI

transcript from alignment at sc0002392:14155..14563

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040333 ID=TCONS_00040333|Name=TCONS_00040333|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0002392:14155..14563 (Clytia hemisphaerica)
GAAGCTCTCGAAATTTATCGACGAGTGGAACAGAAGGAGCTGACAACACT
TGGCAATGATCATCCAAGTGTGTTGACAACACAAAATAGTATTGCGCATT
GCTTACAAGAAACTGGTAAAACGAAAGAAGCTCTCGAAATTTACCGACGA
GTTGAACAGAAGCAGCTGACAACATTTGGCACTGATCATCCAAGTGTGTT
GACAACGCAACACAGTATTGCGCAATGCTTACAAGAAACTGGTAAAACGA
AAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCGGCTGACAACA
TTTGGCACTGATCATCCAAGTGTGTTGACAACGCAACACAATATTGCGCA
CTGCTTACAAGAAACTGGTAAAACGAAAGAAGCTCTCGAAATTTACCGAC
GAGTTGAAC

Coding sequence (CDS) from alignment at sc0002392:14155..14563

>TCONS_00040333 ID=TCONS_00040333|Name=TCONS_00040333|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0002392:14155..14563 (Clytia hemisphaerica)
GAAGCTCTCGAAATTTATCGACGAGTGGAACAGAAGGAGCTGACAACACT
TGGCAATGATCATCCAAGTGTGTTGACAACACAAAATAGTATTGCGCATT
GCTTACAAGAAACTGGTAAAACGAAAGAAGCTCTCGAAATTTACCGACGA
GTTGAACAGAAGCAGCTGACAACATTTGGCACTGATCATCCAAGTGTGTT
GACAACGCAACACAGTATTGCGCAATGCTTACAAGAAACTGGTAAAACGA
AAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCGGCTGACAACA
TTTGGCACTGATCATCCAAGTGTGTTGACAACGCAACACAATATTGCGCA
CTGCTTACAAGAAACTGGTAAAACGAAAGAAGCTCTCGAAATTTACCGAC
GAGTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024497XLOC_024497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040333-exon-sc0002392-1491911889:14155..14563TCONS_00040333-exon-sc0002392-1491911889:14155..14563Clytia hemisphaericaexon
TCONS_00040333-exon-sc0002392-1510915933:14155..14563TCONS_00040333-exon-sc0002392-1510915933:14155..14563Clytia hemisphaericaexon
TCONS_00040333-exon-sc0002392-1575043694:14155..14563TCONS_00040333-exon-sc0002392-1575043694:14155..14563Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040333-proteinTCONS_00040333-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002392supercontigsc0002392:14155..14563 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.956874	0.567101	2.05255	1.06754	1.38249	1.1522	1.25803	2.00838	5.95339	3.22492	1.91382	1.52275	0.665825	0.13649	13.1998	10.7105	0	0.250969	0	0	2.095	1.18983	0	0	0.196888	0.200597
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00040333 vs. Swiss-Prot (Human)
Match: KLC1 (Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.572e-17
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = -1 
Query:    5 TLGNDHPSVLTTQNSIAHCLQETGKTKEALEIYRRVEQKQLTTFGTDHPSVLTTQHSIAQCLQETGKTKEALEIYRRVEQKRLTTFGTDHPSVLTTQHNIAHCLQETGKTKEALEIYRRV 364
            TLG DHP+V  T N++A    + GK KEA  + +R  + +    G DHP V    +++A   Q  GK +E    Y+R  +   T  G D P+V  T++N+A C  + GK K+A  +Y+ +
Sbjct:  288 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 407
The following BLAST results are available for this feature:
BLAST of TCONS_00040333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC14.572e-1735.00Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1... [more]
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