TCONS_00040333-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040333-protein
Unique NameTCONS_00040333-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length136

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040333-protein ID=TCONS_00040333-protein|Name=TCONS_00040333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
EALEIYRRVEQKELTTLGNDHPSVLTTQNSIAHCLQETGKTKEALEIYRR
VEQKQLTTFGTDHPSVLTTQHSIAQCLQETGKTKEALEIYRRVEQKRLTT
FGTDHPSVLTTQHNIAHCLQETGKTKEALEIYRRVE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024497XLOC_024497Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040333TCONS_00040333Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 1..82
e-value: 2.2E-20
score: 72.2
coord: 83..136
e-value: 5.7E-14
score: 51.7
NoneNo IPR availablePFAMPF13424TPR_12coord: 1..51
e-value: 1.4E-7
score: 31.6
coord: 100..135
e-value: 1.3E-7
score: 31.7
coord: 58..93
e-value: 1.2E-7
score: 31.8
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 14..135

Blast
[Close]
BLAST of TCONS_00040333-protein vs. Swiss-Prot (Human)
Match: KLC1 (Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.115e-17
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 0 
Query:   16 TLGNDHPSVLTTQNSIAHCLQETGKTKEALEIYRRVEQKQLTTFGTDHPSVLTTQHSIAQCLQETGKTKEALEIYRRVEQKRLTTFGTDHPSVLTTQHNIAHCLQETGKTKEALEIYRRV 135
            TLG DHP+V  T N++A    + GK KEA  + +R  + +    G DHP V    +++A   Q  GK +E    Y+R  +   T  G D P+V  T++N+A C  + GK K+A  +Y+ +
Sbjct:  288 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 407
The following BLAST results are available for this feature:
BLAST of TCONS_00040333-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC11.115e-1735.00Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1... [more]
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