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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040326 ID=TCONS_00040326|Name=TCONS_00040326|organism=Clytia hemisphaerica|type=transcript|length=1629bp
ATGGTCGTTACTCGAAAACCGGATGGTAACCCAAGACGCACTGTCGACCT
CTCGCCACTAAACAAGTTCTGCAAACGTGAAACCCACAATTCAGAAGCCC
CATTCCACGTTGCTCGACGGGTACCCAGAAACACTTGGAAGACAGTGACA
GATGCCTGGAACGGCTTCCACAGCGTACCCCTCCGTGAAGCCGACCGCCC
TCTTACCACCTTCATCACACCCTTTGGTCGGTGGCGCTACAAACGTCTCC
CACAGGGATTCCTCTCCTCCGGTGACGGTTACAATCGAAGGTTGGACGCT
ATCCTTGCTGAATTCGAACGGAGAGAAAGAGTTGTTGATGATACCTTGTT
CCATGACGAAAGCCTTGAGGAGCACTGGAAAAGAACAATCGATATCCTCT
CTCTTCTAGGAGAGGCCGGTGTTGTCCTAAACCCTCAAAAGTTCCAATTT
GCCAAGAGAGCAGTTGACTTCGCTGGTTTCCGTATTTCAGAGGACCGCAT
AGAGCCCCTCCCAAAGTATTTTGATTCGATTAAAAACTTTCCGACTCCGA
CCTCGACAACCGATGTGAGAAGCTGGTTTGGTCTCGTTAATCAAGTGGCA
AATTACGCTCAACTAAGAAAGCATCTTGAGCCCTTTCGACGGTTTTTGTC
TCCCAGATTTCAGTTTCGGTGGACCCCAGAACTTGACGCTGCATTTGAAC
TTTCAAAACAATGCATTATTGACGATATTAAATCTGGAGTTGAAATTTTT
GATCTTGATAAAACAACCTGTGTCAGAACTGATTGGTCGAAGAAAGGCAT
GGGCTACTTTCTCTTCCAGAAACATTGTGAGTGTGATGCTATCGTTCCGT
CATGCTGCGAGGATGGCTGGCGCATAACTCTTGCCGGCTCCCGATTCCTT
CAATCTTCCGAGGAGAACTATGCTGCTATTGAGGGGGAAGGACTAGCCAT
TGCTTGGAGTTTAGAACAGTCGAAGTATTTTACAATGGGGTGTAATGATT
TAACCGTCGCCACAGATCATGAACCCTTGACTAAGATATTTTCCGACAAG
ACGAGTCTCGATGAAATCACAAACACCAGATTGCTACGTCTTAAGCGTCG
TACCCTGCCTTGGTATTTCCGCATTGTCCATCTACCAGGCAAAACTAATC
TAGCTGCCAACGCCACATCGCGCAAACCCTCTGGAAACGCACATGATCAA
GTCGAGGAAGACCGTGTTGAAGCATTCATTGCAGCTGCAATTCGTCGTGA
CACAGAGTCGGTTATATCCTTGACCTGGGACCGAATCGCCAACGCAACTT
CACACGATCCTGGGATGAGTGCCCTAGTAGACGCAATCTTGTGTGGTTTT
CCAGAAGAAAGTCGCTCAAACGAGACAGTAGCCTCCTACTGGATATACCG
GCATGGCTTATACTTGACTGACGGTGTAGTAGTTTTCGATGACCGTGCTG
TTATCCCACCATCTCTTTGCCCGGCTACCCTTGCAGTTCTCCATTCAGCA
CATCAGGGAGTATCGACAATGGGTGCCCGCGCTAGAACAATCATCTTTTG
GCCTGGTATCACAGAGGACATTGAACGTGTGCGACAATCCTGTCAAGACT
GCAACAAAAACGCTCCGTCTAACCCGCCA Run BLAST on NCBI protein sequence of TCONS_00040326-protein >TCONS_00040326-protein ID=TCONS_00040326-protein|Name=TCONS_00040326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp
MVVTRKPDGNPRRTVDLSPLNKFCKRETHNSEAPFHVARRVPRNTWKTVT
DAWNGFHSVPLREADRPLTTFITPFGRWRYKRLPQGFLSSGDGYNRRLDA
ILAEFERRERVVDDTLFHDESLEEHWKRTIDILSLLGEAGVVLNPQKFQF
AKRAVDFAGFRISEDRIEPLPKYFDSIKNFPTPTSTTDVRSWFGLVNQVA
NYAQLRKHLEPFRRFLSPRFQFRWTPELDAAFELSKQCIIDDIKSGVEIF
DLDKTTCVRTDWSKKGMGYFLFQKHCECDAIVPSCCEDGWRITLAGSRFL
QSSEENYAAIEGEGLAIAWSLEQSKYFTMGCNDLTVATDHEPLTKIFSDK
TSLDEITNTRLLRLKRRTLPWYFRIVHLPGKTNLAANATSRKPSGNAHDQ
VEEDRVEAFIAAAIRRDTESVISLTWDRIANATSHDPGMSALVDAILCGF
PEESRSNETVASYWIYRHGLYLTDGVVVFDDRAVIPPSLCPATLAVLHSA
HQGVSTMGARARTIIFWPGITEDIERVRQSCQDCNKNAPSNPP Run BLAST on NCBI transcript from alignment at sc0002391:4084..5712 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040326 ID=TCONS_00040326|Name=TCONS_00040326|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at sc0002391:4084..5712 (Clytia hemisphaerica)
TGGCGGGTTAGACGGAGCGTTTTTGTTGCAGTCTTGACAGGATTGTCGCA
CACGTTCAATGTCCTCTGTGATACCAGGCCAAAAGATGATTGTTCTAGCG
CGGGCACCCATTGTCGATACTCCCTGATGTGCTGAATGGAGAACTGCAAG
GGTAGCCGGGCAAAGAGATGGTGGGATAACAGCACGGTCATCGAAAACTA
CTACACCGTCAGTCAAGTATAAGCCATGCCGGTATATCCAGTAGGAGGCT
ACTGTCTCGTTTGAGCGACTTTCTTCTGGAAAACCACACAAGATTGCGTC
TACTAGGGCACTCATCCCAGGATCGTGTGAAGTTGCGTTGGCGATTCGGT
CCCAGGTCAAGGATATAACCGACTCTGTGTCACGACGAATTGCAGCTGCA
ATGAATGCTTCAACACGGTCTTCCTCGACTTGATCATGTGCGTTTCCAGA
GGGTTTGCGCGATGTGGCGTTGGCAGCTAGATTAGTTTTGCCTGGTAGAT
GGACAATGCGGAAATACCAAGGCAGGGTACGACGCTTAAGACGTAGCAAT
CTGGTGTTTGTGATTTCATCGAGACTCGTCTTGTCGGAAAATATCTTAGT
CAAGGGTTCATGATCTGTGGCGACGGTTAAATCATTACACCCCATTGTAA
AATACTTCGACTGTTCTAAACTCCAAGCAATGGCTAGTCCTTCCCCCTCA
ATAGCAGCATAGTTCTCCTCGGAAGATTGAAGGAATCGGGAGCCGGCAAG
AGTTATGCGCCAGCCATCCTCGCAGCATGACGGAACGATAGCATCACACT
CACAATGTTTCTGGAAGAGAAAGTAGCCCATGCCTTTCTTCGACCAATCA
GTTCTGACACAGGTTGTTTTATCAAGATCAAAAATTTCAACTCCAGATTT
AATATCGTCAATAATGCATTGTTTTGAAAGTTCAAATGCAGCGTCAAGTT
CTGGGGTCCACCGAAACTGAAATCTGGGAGACAAAAACCGTCGAAAGGGC
TCAAGATGCTTTCTTAGTTGAGCGTAATTTGCCACTTGATTAACGAGACC
AAACCAGCTTCTCACATCGGTTGTCGAGGTCGGAGTCGGAAAGTTTTTAA
TCGAATCAAAATACTTTGGGAGGGGCTCTATGCGGTCCTCTGAAATACGG
AAACCAGCGAAGTCAACTGCTCTCTTGGCAAATTGGAACTTTTGAGGGTT
TAGGACAACACCGGCCTCTCCTAGAAGAGAGAGGATATCGATTGTTCTTT
TCCAGTGCTCCTCAAGGCTTTCGTCATGGAACAAGGTATCATCAACAACT
CTTTCTCTCCGTTCGAATTCAGCAAGGATAGCGTCCAACCTTCGATTGTA
ACCGTCACCGGAGGAGAGGAATCCCTGTGGGAGACGTTTGTAGCGCCACC
GACCAAAGGGTGTGATGAAGGTGGTAAGAGGGCGGTCGGCTTCACGGAGG
GGTACGCTGTGGAAGCCGTTCCAGGCATCTGTCACTGTCTTCCAAGTGTT
TCTGGGTACCCGTCGAGCAACGTGGAATGGGGCTTCTGAATTGTGGGTTT
CACGTTTGCAGAACTTGTTTAGTGGCGAGAGGTCGACAGTGCGTCTTGGG
TTACCATCCGGTTTTCGAGTAACGACCAT Coding sequence (CDS) from alignment at sc0002391:4084..5712 >TCONS_00040326 ID=TCONS_00040326|Name=TCONS_00040326|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0002391:4084..5712 (Clytia hemisphaerica)
TGGCGGGTTAGACGGAGCGTTTTTGTTGCAGTCTTGACAGGATTGTCGCA
CACGTTCAATGTCCTCTGTGATACCAGGCCAAAAGATGATTGTTCTAGCG
CGGGCACCCATTGTCGATACTCCCTGATGTGCTGAATGGAGAACTGCAAG
GGTAGCCGGGCAAAGAGATGGTGGGATAACAGCACGGTCATCGAAAACTA
CTACACCGTCAGTCAAGTATAAGCCATGCCGGTATATCCAGTAGGAGGCT
ACTGTCTCGTTTGAGCGACTTTCTTCTGGAAAACCACACAAGATTGCGTC
TACTAGGGCACTCATCCCAGGATCGTGTGAAGTTGCGTTGGCGATTCGGT
CCCAGGTCAAGGATATAACCGACTCTGTGTCACGACGAATTGCAGCTGCA
ATGAATGCTTCAACACGGTCTTCCTCGACTTGATCATGTGCGTTTCCAGA
GGGTTTGCGCGATGTGGCGTTGGCAGCTAGATTAGTTTTGCCTGGTAGAT
GGACAATGCGGAAATACCAAGGCAGGGTACGACGCTTAAGACGTAGCAAT
CTGGTGTTTGTGATTTCATCGAGACTCGTCTTGTCGGAAAATATCTTAGT
CAAGGGTTCATGATCTGTGGCGACGGTTAAATCATTACACCCCATTGTAA
AATACTTCGACTGTTCTAAACTCCAAGCAATGGCTAGTCCTTCCCCCTCA
ATAGCAGCATAGTTCTCCTCGGAAGATTGAAGGAATCGGGAGCCGGCAAG
AGTTATGCGCCAGCCATCCTCGCAGCATGACGGAACGATAGCATCACACT
CACAATGTTTCTGGAAGAGAAAGTAGCCCATGCCTTTCTTCGACCAATCA
GTTCTGACACAGGTTGTTTTATCAAGATCAAAAATTTCAACTCCAGATTT
AATATCGTCAATAATGCATTGTTTTGAAAGTTCAAATGCAGCGTCAAGTT
CTGGGGTCCACCGAAACTGAAATCTGGGAGACAAAAACCGTCGAAAGGGC
TCAAGATGCTTTCTTAGTTGAGCGTAATTTGCCACTTGATTAACGAGACC
AAACCAGCTTCTCACATCGGTTGTCGAGGTCGGAGTCGGAAAGTTTTTAA
TCGAATCAAAATACTTTGGGAGGGGCTCTATGCGGTCCTCTGAAATACGG
AAACCAGCGAAGTCAACTGCTCTCTTGGCAAATTGGAACTTTTGAGGGTT
TAGGACAACACCGGCCTCTCCTAGAAGAGAGAGGATATCGATTGTTCTTT
TCCAGTGCTCCTCAAGGCTTTCGTCATGGAACAAGGTATCATCAACAACT
CTTTCTCTCCGTTCGAATTCAGCAAGGATAGCGTCCAACCTTCGATTGTA
ACCGTCACCGGAGGAGAGGAATCCCTGTGGGAGACGTTTGTAGCGCCACC
GACCAAAGGGTGTGATGAAGGTGGTAAGAGGGCGGTCGGCTTCACGGAGG
GGTACGCTGTGGAAGCCGTTCCAGGCATCTGTCACTGTCTTCCAAGTGTT
TCTGGGTACCCGTCGAGCAACGTGGAATGGGGCTTCTGAATTGTGGGTTT
CACGTTTGCAGAACTTGTTTAGTGGCGAGAGGTCGACAGTGCGTCTTGGG
TTACCATCCGGTTTTCGAGTAACGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040326-exon-sc0002391-1491911889:4084..5712 | TCONS_00040326-exon-sc0002391-1491911889:4084..5712 | Clytia hemisphaerica | exon |
| TCONS_00040326-exon-sc0002391-1510915933:4084..5712 | TCONS_00040326-exon-sc0002391-1510915933:4084..5712 | Clytia hemisphaerica | exon |
| TCONS_00040326-exon-sc0002391-1575043694:4084..5712 | TCONS_00040326-exon-sc0002391-1575043694:4084..5712 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0002391 | supercontig | sc0002391:4084..5712 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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