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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040318 ID=TCONS_00040318|Name=TCONS_00040318|organism=Clytia hemisphaerica|type=transcript|length=1038bp
GCCATATCTTTGCTCGAGGAATGTTTTACATGCTAGATTTAGGTTGTCTt
agatcctaacctaagaatactgtaagaatatttcaggataattttccaaa
aaagttaagaatatccatcattcttatgataaaaaaaacgtataaaatGT
ATCCAAAGTTTAGAAAGTCAAATCATAGCATAGGATTGCGGTCCAATCAA
TTCACAATCTACTTTTTAATCGCCAAGACCAGGAAGTTGTGCCAAAGAAA
GGATTTAGTTCCAAAATCTTCGAGGTTACTACAGCTTTCCCAATAAGTAC
CATTAAAAGTCATATCTTTTATATGAGTGTTATCAGTACGATGTAAAAGT
TTaacacattttattttatcGGAACTCCATGCTGGATCTTTGATTTCCCT
TTGATGTAGAAAAATATCAGAATTAGAAAAACTTGTCGTCTTGATAAGCA
AAACATTTCCTGATTTTATGGGTCCCTCCAAAAAGCTTTTCCTCTCAAGC
TCACTAACCCACCTTTTATAATCTTCACAAAATACAGTATTCTCTAAAAC
CATTGAAAGGCCACTTGATATAAAATCTTCAATGGACATTCGACTAAAAT
CAATTGATTGTTTGTCTCGATGAACGGGGTGATAAATTGGTACAGGAGTT
GTCACTTTCTTTTGTACTTGGTTATCATTCTGGAGCCTCTTGTTTGCTTC
GTTAAGATCATTGAGTTGACCTTCCATTTTTTTCTTCGCCTGGAGTACTT
CTTCCTTTTCACGTTTGGCAGTTTggtacaaattttcaaatttatttttc
tctgtTTCTAGttgtttgttttcttctttgagATGCTCGATTTCTGTCTG
AGATTTCTTTTGGTTCAATTTTAAGACTTTTAGTTCGTCTCTGGCTGATG
CTTCGTTGGCTTTCAagagcctgaacctttcatgtcaaaaaagtcctgaa
aacactgaaaacacttTTACCTGAAACACCttttctgaacctttcatgGT
TTTCTgggtgtttttggcaaaaacatTTTACCAGAAAC Run BLAST on NCBI protein sequence of TCONS_00040318-protein >TCONS_00040318-protein ID=TCONS_00040318-protein|Name=TCONS_00040318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MEGQLNDLNEANKRLQNDNQVQKKVTTPVPIYHPVHRDKQSIDFSRMSIE
DFISSGLSMVLENTVFCEDYKRWVSELERKSFLEGPIKSGNVLLIKTTSF
SNSDIFLHQREIKDPAWSSDKIKCVKLLHRTDNTHIKDMTFNGTYWESCS
NLEDFGTKSFLWHNFLVLAIKK Run BLAST on NCBI transcript from alignment at sc0002389:2418..3455 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040318 ID=TCONS_00040318|Name=TCONS_00040318|organism=Clytia hemisphaerica|type=transcript|length=1038bp|location=Sequence derived from alignment at sc0002389:2418..3455 (Clytia hemisphaerica)
GTTTCTGGTAAAatgtttttgccaaaaacacccAGAAAACcatgaaaggt
tcagaaaaGGTGTTTCAGGTAAaagtgttttcagtgttttcaggactttt
ttgacatgaaaggttcaggctctTGAAAGCCAACGAAGCATCAGCCAGAG
ACGAACTAAAAGTCTTAAAATTGAACCAAAAGAAATCTCAGACAGAAATC
GAGCATctcaaagaagaaaacaaacaaCTAGAAacagagaaaaataaatt
tgaaaatttgtaccAAACTGCCAAACGTGAAAAGGAAGAAGTACTCCAGG
CGAAGAAAAAAATGGAAGGTCAACTCAATGATCTTAACGAAGCAAACAAG
AGGCTCCAGAATGATAACCAAGTACAAAAGAAAGTGACAACTCCTGTACC
AATTTATCACCCCGTTCATCGAGACAAACAATCAATTGATTTTAGTCGAA
TGTCCATTGAAGATTTTATATCAAGTGGCCTTTCAATGGTTTTAGAGAAT
ACTGTATTTTGTGAAGATTATAAAAGGTGGGTTAGTGAGCTTGAGAGGAA
AAGCTTTTTGGAGGGACCCATAAAATCAGGAAATGTTTTGCTTATCAAGA
CGACAAGTTTTTCTAATTCTGATATTTTTCTACATCAAAGGGAAATCAAA
GATCCAGCATGGAGTTCCgataaaataaaatgtgttAAACTTTTACATCG
TACTGATAACACTCATATAAAAGATATGACTTTTAATGGTACTTATTGGG
AAAGCTGTAGTAACCTCGAAGATTTTGGAACTAAATCCTTTCTTTGGCAC
AACTTCCTGGTCTTGGCGATTAAAAAGTAGATTGTGAATTGATTGGACCG
CAATCCTATGCTATGATTTGACTTTCTAAACTTTGGATACattttatacg
ttttttttatcataagaatgatggatattcttaacttttttggaaaatta
tcctgaaatattcttacagtattcttaggttaggatctaAGACAACCTAA
ATCTAGCATGTAAAACATTCCTCGAGCAAAGATATGGC Coding sequence (CDS) from alignment at sc0002389:2418..3455 >TCONS_00040318 ID=TCONS_00040318|Name=TCONS_00040318|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0002389:2418..3455 (Clytia hemisphaerica)
ATGGAAGGTCAACTCAATGATCTTAACGAAGCAAACAAGAGGCTCCAGAA
TGATAACCAAGTACAAAAGAAAGTGACAACTCCTGTACCAATTTATCACC
CCGTTCATCGAGACAAACAATCAATTGATTTTAGTCGAATGTCCATTGAA
GATTTTATATCAAGTGGCCTTTCAATGGTTTTAGAGAATACTGTATTTTG
TGAAGATTATAAAAGGTGGGTTAGTGAGCTTGAGAGGAAAAGCTTTTTGG
AGGGACCCATAAAATCAGGAAATGTTTTGCTTATCAAGACGACAAGTTTT
TCTAATTCTGATATTTTTCTACATCAAAGGGAAATCAAAGATCCAGCATG
GAGTTCCgataaaataaaatgtgttAAACTTTTACATCGTACTGATAACA
CTCATATAAAAGATATGACTTTTAATGGTACTTATTGGGAAAGCTGTAGT
AACCTCGAAGATTTTGGAACTAAATCCTTTCTTTGGCACAACTTCCTGGT
CTTGGCGATTAAAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040318-exon-sc0002389-1491911889:2418..3455 | TCONS_00040318-exon-sc0002389-1491911889:2418..3455 | Clytia hemisphaerica | exon |
| TCONS_00040318-exon-sc0002389-1510915933:2418..3455 | TCONS_00040318-exon-sc0002389-1510915933:2418..3455 | Clytia hemisphaerica | exon |
| TCONS_00040318-exon-sc0002389-1575043694:2418..3455 | TCONS_00040318-exon-sc0002389-1575043694:2418..3455 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002389 | supercontig | sc0002389:2418..3455 . |
Blast
The following BLAST results are available for this feature:
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