TCONS_00040311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040311
Unique NameTCONS_00040311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040311 ID=TCONS_00040311|Name=TCONS_00040311|organism=Clytia hemisphaerica|type=transcript|length=323bp
tattttttcaaattttaaaagacgAAGTAAGATGTATGCCTGGCCAACTG
CATTACTACTATTGTTAGGCCAATTGTGCATTATCGTCTGTTATGTATCT
TACGAAATCACAAATCTTGTTAGTTCGTCTTTGGAAGAATCAGAAGAAAT
CAAAGGACCACGGTCAATCACTGAATGTGTTATGAGATGtcaaagaaaaa
ctaaagaaggattttacacaaatgacaacAAATGTTTTTGTCATAATGGC
GTTGTTGAAAACCAAGGGGGTGAAAGTGGAAGTTCGACAAAAGAAGTGGA
GGTCCACGAGGCTGAGAATggta
Run BLAST on NCBI

protein sequence of TCONS_00040311-protein

>TCONS_00040311-protein ID=TCONS_00040311-protein|Name=TCONS_00040311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
IFSNFKRRSKMYAWPTALLLLLGQLCIIVCYVSYEITNLVSSSLEESEEI
KGPRSITECVMRCQRKTKEGFYTNDNKCFCHNGVVENQGGESGSSTKEVE
VHEAENG
Run BLAST on NCBI

transcript from alignment at sc0002385:15688..16010

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040311 ID=TCONS_00040311|Name=TCONS_00040311|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0002385:15688..16010 (Clytia hemisphaerica)
taccATTCTCAGCCTCGTGGACCTCCACTTCTTTTGTCGAACTTCCACTT
TCACCCCCTTGGTTTTCAACAACGCCATTATGACAAAAACATTTgttgtc
atttgtgtaaaatccttctttagtttttctttgaCATCTCATAACACATT
CAGTGATTGACCGTGGTCCTTTGATTTCTTCTGATTCTTCCAAAGACGAA
CTAACAAGATTTGTGATTTCGTAAGATACATAACAGACGATAATGCACAA
TTGGCCTAACAATAGTAGTAATGCAGTTGGCCAGGCATACATCTTACTTc
gtcttttaaaatttgaaaaaata

Coding sequence (CDS) from alignment at sc0002385:15688..16010

>TCONS_00040311 ID=TCONS_00040311|Name=TCONS_00040311|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0002385:15688..16010 (Clytia hemisphaerica)
accATTCTCAGCCTCGTGGACCTCCACTTCTTTTGTCGAACTTCCACTTT
CACCCCCTTGGTTTTCAACAACGCCATTATGACAAAAACATTTgttgtca
tttgtgtaaaatccttctttagtttttctttgaCATCTCATAACACATTC
AGTGATTGACCGTGGTCCTTTGATTTCTTCTGATTCTTCCAAAGACGAAC
TAACAAGATTTGTGATTTCGTAAGATACATAACAGACGATAATGCACAAT
TGGCCTAACAATAGTAGTAATGCAGTTGGCCAGGCATACATCTTACTTcg
tcttttaaaatttgaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024475XLOC_024475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040311-proteinTCONS_00040311-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040311-exon-sc0002385-1491911889:15688..16010TCONS_00040311-exon-sc0002385-1491911889:15688..16010Clytia hemisphaericaexon
TCONS_00040311-exon-sc0002385-1510915933:15688..16010TCONS_00040311-exon-sc0002385-1510915933:15688..16010Clytia hemisphaericaexon
TCONS_00040311-exon-sc0002385-1575043694:15688..16010TCONS_00040311-exon-sc0002385-1575043694:15688..16010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002385supercontigsc0002385:15688..16010 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.606905	1.76169	0	0	0.663222	1.78666	2.62182	0	0	0	0	8.44187	2.6027	1.61086	0.568878	0.331203	0	8.67705	6.78401	0.300869	0.365551	0.356796	0.487212	0	1.74475	0	0.455379	1.03617	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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