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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040308 ID=TCONS_00040308|Name=TCONS_00040308|organism=Clytia hemisphaerica|type=transcript|length=193bp
gcggctcTCGTTGATTGTGAGACACCAGCTTGTGGAAAACCAGCCAAACT
TCAATGTCCTACTTGCATTAAACTCAATATTTCTGGCAGTTTCTTTTGTG
AGCAGcgtataaacaagccttaaaaatcgaagagctgtcttgggaattga
atgacaaaatttggttggttgatatttggctgctgcacgttcg Run BLAST on NCBI transcript from alignment at sc0002384:13812..16341- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040308 ID=TCONS_00040308|Name=TCONS_00040308|organism=Clytia hemisphaerica|type=transcript|length=2530bp|location=Sequence derived from alignment at sc0002384:13812..16341- (Clytia hemisphaerica)
GCGGCTCTCGTTGATTGTGAGACACCAGCTTGTGGAAAACCAGCCAAACT
TCAATGTCCTACTTGCATTAAACTCAATATTTCTGGCAGTTTCTTTTGTG
AGCAGGTAACAGATCTTAAATTATTCAAAAATCATAAAATTTAGCTTTTA
GGCCTTGGTCAGTAGTTTGCTAGTTTTGTTTTTGATATAATTTTAAAAAG
CTCGATCACTCGACCCAGCTAGCTAGAGGGGCCAAATATAACCCAAGATC
TGCCGTTCGATTGTCAAATGTAATCGAATCAATCGAATATTACCCAAGAT
TTGCCGTTCGATTGTCAACCGTAATAGAATCAATCAAATATTACCCAAGA
TTTGCCGTTCGATTGTCGACTGTAAGGCGGCAATCACAAATATCTTTTCG
TTTCGCGTCGCCCGACCGACTCTTGAAAATTGAGTAGAATTGAGTCGGAC
AGTTAGTCACACTAGCGTCCCGCCAAAATGCGTATCAAAGATTAATGCTG
CGAAAGCGCTATATCGTTTACTTGACTCTCAAGCAAAAAAATGTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACT
AATTTGAAGATAAACTTCCCAAGAAAAAGATCTACGGGGGAGGCGGAACC
CACCTAGATCCGCGCACCACCGGATAGGCTGTTTCCCGGAAATTTTGCCC
GACCTCAAATAATGACCCATTTACATATCCAGAATTATTTTTACTCTAGC
GTATAAACCAGGCCTTAAAAATCGAAGCGCTGACTCGGGAATTGAATGAC
AAATTTTGGTTGGTTGATTTTGGCTGCTGCACGTTTCATTTTGTTTCAAA
CTTTCAAGTTTTAATTGATTGTCTTGCGAACTTGATTCAGGTAACTCTCA
TCCTTGTTGTGCAAATTCATCCTGTAGATGACTGATGTTGTTTTTTCTGA
AAGCTAGATTTCCTAGTGTGACTAACTGTCGGAGAGTCGCTAAATTCGGA
CTTTTTGCGTTGACGTTTCCTTCGCTCAAAAATTTTATTATTGCCAATTT
TTTGCGAGCAATTTCTAGCGCATTCGTTTTGTGTCAAAGGTCACAGTGTT
CAAAACAAAGGTTATAAATTGAAACCACGCCAAACACACGGTCGTTTTGG
CTGGCTCGGCTATATCGAACATTTCTCTTCGACTCAGTTAACGCGCTTTA
ACCACCTCACAGACCAAATTTAAGATAACCTGAAAAATTTTACGACCGAC
CGACCGACTCACTTTTTAAACCAAGCGAGGACGCGAAATGAAAATATTTG
TGATTGCCGCCTAATAGAATCAATCAAATATTACCCAAGATTTGCCATTT
GTTTGAATCGATAACGTTCGTTTGATTGATCCTTTCGATTACGTTTGATT
ACGTTCAATCTTGTTAGGTTGATTTGATATTGTACAAGCAAGCGATAAGA
AGAAGATGCAAGTACAGCAGGCTTGTTCGTTATCTGAGTTTCTGATGCCG
GATCGGCGGCCATCCACGCTAGAGCTCTACCGTGAGTGGTCCTAAATCCG
ACAGCCCTGCCTAATTCCGACCCCCCCAAATAAAGGTTATGAAAAAAAAT
TCTACGTTTACAAGNNTTATTGTTAATTATTTGGTTCAACTGGTTTACTG
TATCAAATTTCCCAGTTTAGTTGACACTTTGGTATTTTCGTTGCGTCACA
GCAAAAGGTTTTTTTTTGTTTTAGTTTGTATCTTTGAAAGACCACGTCGG
ATTTAGGCAGCGCTGTCGGATTTAGGACCACTCACGGTATAGAAGCGTGC
CAATTTCCCATCGGTGAGGAATGATAGTCGGCCTTTGATATGCCCAGTCA
GGACAGTTAGTCACACTAGCGTCCCGCCAAAATGCGTATCAAAGATTAAT
ACTGCGAAAGCCCTATATTGTTTACTTGACTCTCAAGCAAAAAATTGCAC
TGCAAAACTTCTAAAGGGATTCATGAAAAAATAACACGGCGCTTTTTAAT
GAAAATAACATTAATTCAAAAACTTTGAGAAATTGCCTAAAATTTGAGCC
ATAGATGAAAAAAATTGAGCCAAACTAACCTTGAAAACTAATTTGAAGAG
CAACTTCATTCCCAAGAAAAATATCTACAGGGGAGGCGGAACCCACCTAG
ATCCGCGCACCGCCGGATAGGCTTTTTCCCGGAAATTTTGCCAGACCTCA
AACAATGACCCATTTACATGTGCGGAATTATTTTTATTTTAGCGTATAAA
CAAGCCTTAAAAATCGAAGAGCTGTCTTGGGAATTGAATGACAAAATTTG
GTTGGTTGATATTTGGCTGCTGCACGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040308-exon-sc0002384-1575043694:16237..16341 | TCONS_00040308-exon-sc0002384-1575043694:16237..16341 | Clytia hemisphaerica | exon |
| TCONS_00040308-exon-sc0002384-1575043694:13812..13899 | TCONS_00040308-exon-sc0002384-1575043694:13812..13899 | Clytia hemisphaerica | exon |
| TCONS_00040308-exon-sc0002384-1510915933:16237..16341 | TCONS_00040308-exon-sc0002384-1510915933:16237..16341 | Clytia hemisphaerica | exon |
| TCONS_00040308-exon-sc0002384-1510915933:13812..13899 | TCONS_00040308-exon-sc0002384-1510915933:13812..13899 | Clytia hemisphaerica | exon |
| TCONS_00040308-exon-sc0002384-1491911889:16237..16341 | TCONS_00040308-exon-sc0002384-1491911889:16237..16341 | Clytia hemisphaerica | exon |
| TCONS_00040308-exon-sc0002384-1491911889:13812..13899 | TCONS_00040308-exon-sc0002384-1491911889:13812..13899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002384 | supercontig | sc0002384:13812..16341 - |
Blast
The following BLAST results are available for this feature:
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