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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040304 ID=TCONS_00040304|Name=TCONS_00040304|organism=Clytia hemisphaerica|type=transcript|length=1935bp
tttttagtttattactatctaattttttatttgtaatgtctaatttttaa
tttatagtGCGTCTGATTCATAAATTTTTAGTGTCTAATTTTATAAATTA
TGATATCTAAACTACACATTTTATAATgtctaaagttaaaaaaaaagtcc
ATTAGGACATGTCCAGAATTCCTGAGCATGCGCTGTTAAGATTACCCACA
ATACCTTTCTTAATGTCCAAATCACAAACACAAATAAACATGGCGGATGA
AGTGGTAGGAGACGTAGTTTCATTCTTGGATAAACTTCCTGATGAGTTTC
GAGATATACATTCTCGTATTGATGCGATGCAAGCTTTAGAACATTGTCAG
ATTAGATTGGAAAATGTTACAAACATGCTGAATTTACTGAACGATTTACT
TAAGAATGAAAACAACCAGTTAATTATTGATTCAATGCAATCCCTCTTGA
GGACAGCACAAGATGCAAGCCATAGATTGAGTGGTTTGCTAGTGAACCGT
CGTCATCAAACTAACCAGACTCCTAGTATGGGAAGACCGAGAAAGGAGTT
AACAGTGGATGAGATAACTAATGGTTTTGAGATCTTCAGGAACTGGAAAG
TTGTGGCATGGACATTAGGTGTCTCTTACAGAACGTTATTGAGGAGGCGC
AGTGAGCATGGAATAGATATATCTCAAGTAAGAGGCCCAAGAGTCACATA
TACAGTCATATCCCATGAAGATTTGTGTAGtcaaattcaagaaatattGC
AAATTCTTCCAGATGCTGGTGAAACGATGGTAATAGGTGCGCTGAGATCA
AGGGACATATTTGTACAAAGAAGAAGAATTCGCGATGCAATCAATGATGT
TGATCCTGTTGGGCGAGCATTAAGACGGACAATATCAGTTGTTAGAAGAG
TTTATAATGTTGCTAGTCCGAATTCACTTTGGCATATTGATGGTCACCAC
AAGTTGATTCGCTGGCGGTTCGTAATCCATGGTGGTATCGACGGATACAC
GAGAAGGATAACTTATCTCCACTGCAGTGATAACAATCGTGCTGGCACAG
TTTTAACATTATTTGAGAATGCTGTCCGAAATTTTGGTCTCCCATCAAGA
GTTCGAAGTGATATGGGAACGGAAAATGTAGACGTAGCCAGATTTATGGA
GAGGAACAGGGGGCATAATAGAGGTAGTATTATTATGGGATCATCCGTCC
ATAACCAGCGCATTGAGCGATTATGGCTGGACGTCAAGCGGCTTGTTGTT
GTTCGCTTTCAATCCATATTCTACTTCCTGGAAGATGAAGGTTACTTGGA
CCCTATTGACGAATTGCATTTGTATATCTTgcatttgatttttctcccca
TTATTAATATAGCTTTAGACGAGTTGGCAAGAGATTGGGACAATCATCCG
TTAAGTAGTGAAAATAACTTTTCTCCTGGGCAGTTGTGGCACCTTGGCCT
GATGAGGTATCGAGACGAAAACCCAAACGGCTACGCTCAGCTTCAAAATC
CTAACTGGAATGAGTATGGTATTGACTACCAAGGACCAGTAGCAGATGAC
GAGGACTTGGGAATAGTCGTACCGAGAACCTATTATCCATTGACGGCAGA
GGAACAACGCCGTGTAAACGATATAATAGCTGGAGCCCGTCGAAATGACG
AAGTCGAAACCTATATAAACGTTATAAATTGTTTAGAAAACTAAAACACA
CACGAGTTTTGGCAAATTTTCGCTTTCATAATTCTGGTCcaatgccaaat
taaatttcattCGCCGCTAAATAGCAGCAACAGAACAACTCAAATTCACT
TTAAGTGTTCACTGATTTCCGCTAGTTTGTAGAAACCAGATTCAACAATT
GGGCTAATTCCCACGAGCCTGGTTTTTACATACAAGCAGGAATCAGTGCA
CACTACCGTACGGACGATTATAATTTTCTAATAAC Run BLAST on NCBI protein sequence of TCONS_00040304-protein >TCONS_00040304-protein ID=TCONS_00040304-protein|Name=TCONS_00040304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
MSRIPEHALLRLPTIPFLMSKSQTQINMADEVVGDVVSFLDKLPDEFRDI
HSRIDAMQALEHCQIRLENVTNMLNLLNDLLKNENNQLIIDSMQSLLRTA
QDASHRLSGLLVNRRHQTNQTPSMGRPRKELTVDEITNGFEIFRNWKVVA
WTLGVSYRTLLRRRSEHGIDISQVRGPRVTYTVISHEDLCSQIQEILQIL
PDAGETMVIGALRSRDIFVQRRRIRDAINDVDPVGRALRRTISVVRRVYN
VASPNSLWHIDGHHKLIRWRFVIHGGIDGYTRRITYLHCSDNNRAGTVLT
LFENAVRNFGLPSRVRSDMGTENVDVARFMERNRGHNRGSIIMGSSVHNQ
RIERLWLDVKRLVVVRFQSIFYFLEDEGYLDPIDELHLYILHLIFLPIIN
IALDELARDWDNHPLSSENNFSPGQLWHLGLMRYRDENPNGYAQLQNPNW
NEYGIDYQGPVADDEDLGIVVPRTYYPLTAEEQRRVNDIIAGARRNDEVE
TYINVINCLEN Run BLAST on NCBI transcript from alignment at sc0002383:17387..20055- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040304 ID=TCONS_00040304|Name=TCONS_00040304|organism=Clytia hemisphaerica|type=transcript|length=2669bp|location=Sequence derived from alignment at sc0002383:17387..20055- (Clytia hemisphaerica)
TTTTTAGTTTATTACTATCTAATTTTTTATTTGTAATGTCTAATTTTTAA
TTTATAGTGCGTCTGATTCATAAATTTTTAGTGTCTAATTTTATAAATTA
TGATATCTAAACTACACATTTTATAATGTCTAAAGTTAAAAAAAAAGTCC
ATTAGGACATGTCCAGAATTCCTGAGCATGCGCTGTTAAGATTACCCACA
ATACCTTTCTTAATGTCCAAATCACAAACACAAATAAACATGGCGGATGA
AGTGGTAGGAGACGTAGTTTCATTCTTGGATAAACTTCCTGATGAGTTTC
GAGATATACATTCTCGTATTGATGCGATGCAAGCTTTAGAACATTGTCAG
ATTAGATTGGAAAATGTTACAAACATGCTGAATTTACTGAACGATTTACT
TAAGAATGAAAACAACCAGTTAATTATTGATTCAATGCAATCCCTCTTGA
GGACAGCACAAGATGCAAGCCATAGATTGAGTGGTTTGCTAGTGAACCGT
CGTCATCAAACTAACCAGACTCCTAGTATGGGAAGACCGAGAAAGGAGTT
AACAGTGGATGAGATAACTAATGGTTTTGAGATCTTCAGGAACTGGAAAG
TTGTGGCATGGACATTAGGTGTCTCTTACAGAACGTTATTGAGGAGGCGC
AGTGAGCATGGAATAGATATATCTCAAGTAAGAGGCCCAAGAGTCACATA
TACAGTCATATCCCATGAAGATTTGTGTAGTCAAATTCAAGAAATATTGC
AAATTCTTCCAGATGCTGGTGAAACGATGGTAATAGGTGCGCTGAGATCA
AGGGACATATTTGTACAAAGAAGAAGAATTCGCGATGCAATCAATGATGT
TGATCCTGTTGGGCGAGCATTAAGACGGACAATATCAGTTGTTAGAAGAG
TTTATAATGTTGCTAGTCCGAATTCACTTTGGTAAGAAAGGATAATTTTT
TGCTTTTAAAAGGAGGATAGCATAATGATTTGAAGGTTTTTTCAGAGGAT
TGTATCTCTGGTATCTTTCGCGAAATACAGTACACCTATGTAATTCGAAA
ACTTATTCGAAAACTTTTACAAACAAAACAACTAAAGCTTAAAATCCCGG
GGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTACAAATTCAAAAGTTAGTCTCTGAAAGGGT
CCCAAAATCACAAAAATCAAAAATTTCTCTCTCAAAGGGTCACGATTTCC
AAGAATTTTGACCAAAATTTGGGGAAAATCGAACCAAAATTTGGAAAAAT
TGGACCAAAATCTAGGAAAAAGTCTCTCAAAGGGTCCCAAAATCACCAAA
ATTTTCTCTCTCAAAGGGTCGATTTTCGATTTTCGCCTCGGACATACCCG
TCACCTCGCAAACCTAGTACCCCCGCCTGGGCTTAAAACATAATCAGACT
TGATCAAACTCCGCCTATAATTCGACAATTCGTGTATAATTTCAAAACTA
TCATTTATCTTTTAGGCATATTGATGGTCACCACAAGTTGATTCGCTGGC
GGTTCGTAATCCATGGTGGTATCGACGGATACACGAGAAGGATAACTTAT
CTCCACTGCAGTGATAACAATCGTGCTGGCACAGTTTTAACATTATTTGA
GAATGCTGTCCGAAATTTTGGTCTCCCATCAAGAGTTCGAAGTGATATGG
GAACGGAAAATGTAGACGTAGCCAGATTTATGGAGAGGAACAGGGGGCAT
AATAGAGGTAGTATTATTATGGGATCATCCGTCCATAACCAGCGCATTGA
GCGATTATGGCTGGACGTCAAGCGGCTTGTTGTTGTTCGCTTTCAATCCA
TATTCTACTTCCTGGAAGATGAAGGTTACTTGGACCCTATTGACGAATTG
CATTTGTATATCTTGCATTTGATTTTTCTCCCCATTATTAATATAGCTTT
AGACGAGTTGGCAAGAGATTGGGACAATCATCCGTTAAGTAGTGAAAATA
ACTTTTCTCCTGGGCAGTTGTGGCACCTTGGCCTGATGAGGTATCGAGAC
GAAAACCCAAACGGCTACGCTCAGCTTCAAAATCCTAACTGGAATGAGTA
TGGTATTGACTACCAAGGACCAGTAGCAGATGACGAGGACTTGGGAATAG
TCGTACCGAGAACCTATTATCCATTGACGGCAGAGGAACAACGCCGTGTA
AACGATATAATAGCTGGAGCCCGTCGAAATGACGAAGTCGAAACCTATAT
AAACGTTATAAATTGTTTAGAAAACTAAAACACACACGAGTTTTGGCAAA
TTTTCGCTTTCATAATTCTGGTCCAATGCCAAATTAAATTTCATTCGCCG
CTAAATAGCAGCAACAGAACAACTCAAATTCACTTTAAGTGTTCACTGAT
TTCCGCTAGTTTGTAGAAACCAGATTCAACAATTGGGCTAATTCCCACGA
GCCTGGTTTTTACATACAAGCAGGAATCAGTGCACACTACCGTACGGACG
ATTATAATTTTCTAATAAC Coding sequence (CDS) from alignment at sc0002383:17387..20055- >TCONS_00040304 ID=TCONS_00040304|Name=TCONS_00040304|organism=Clytia hemisphaerica|type=CDS|length=3072bp|location=Sequence derived from alignment at sc0002383:17387..20055- (Clytia hemisphaerica)
GCATATTGATGGTCACCACAAGTTGATTCGCTGGCGGTTCGTAATCCATG
GTGGTATCGACGGATACACGAGAAGGATAACTTATCTCCACTGCAGTGAT
AACAATCGTGCTGGCACAGTTTTAACATTATTTGAGAATGCTGTCCGAAA
TTTTGGTCTCCCATCAAGAGTTCGAAGTGATATGGGAACGGAAAATGTAG
ACGTAGCCAGATTTATGGAGAGGAACAGGGGGCATAATAGAGGTAGTATT
ATTATGGGATCATCCGTCCATAACCAGCGCATTGAGCGATTATGGCTGGA
CGTCAAGCGGCTTGTTGTTGTTCGCTTTCAATCCATATTCTACTTCCTGG
AAGATGAAGGTTACTTGGACCCTATTGACGAATTGCATTTGTATATCTTG
CATTTGATTTTTCTCCCCATTATTAATATAGCTTTAGACGAGTTGGCAAG
AGATTGGGACAATCATCCGTTAAGTAGTGAAAATAACTTTTCTCCTGGGC
AGTTGTGGCACCTTGGCCTGATGAGGTATCGAGACGAAAACCCAAACGGC
TACGCTCAGCTTCAAAATCCTAACTGGAATGAGTATGGTATTGACTACCA
AGGACCAGTAGCAGATGACGAGGACTTGGGAATAGTCGTACCGAGAACCT
ATTATCCATTGACGGCAGAGGAACAACGCCGTGTAAACGATATAATAGCT
GGAGCCCGTCGAAATGACGAAGTCGAAACCTATATAAACGTTATAAATTG
TTTAGAAAACTAAATGTCCAGAATTCCTGAGCATGCGCTGTTAAGATTAC
CCACAATACCTTTCTTAATGTCCAAATCACAAACACAAATAAACATGGCG
GATGAAGTGGTAGGAGACGTAGTTTCATTCTTGGATAAACTTCCTGATGA
GTTTCGAGATATACATTCTCGTATTGATGCGATGCAAGCTTTAGAACATT
GTCAGATTAGATTGGAAAATGTTACAAACATGCTGAATTTACTGAACGAT
TTACTTAAGAATGAAAACAACCAGTTAATTATTGATTCAATGCAATCCCT
CTTGAGGACAGCACAAGATGCAAGCCATAGATTGAGTGGTTTGCTAGTGA
ACCGTCGTCATCAAACTAACCAGACTCCTAGTATGGGAAGACCGAGAAAG
GAGTTAACAGTGGATGAGATAACTAATGGTTTTGAGATCTTCAGGAACTG
GAAAGTTGTGGCATGGACATTAGGTGTCTCTTACAGAACGTTATTGAGGA
GGCGCAGTGAGCATGGAATAGATATATCTCAAGTAAGAGGCCCAAGAGTC
ACATATACAGTCATATCCCATGAAGATTTGTGTAGTCAAATTCAAGAAAT
ATTGCAAATTCTTCCAGATGCTGGTGAAACGATGGTAATAGGTGCGCTGA
GATCAAGGGACATATTTGTACAAAGAAGAAGAATTCGCGATGCAATCAAT
GATGTTGATCCTGTTGGGCGAGCATTAAGACGGACAATATCAGTTGTTAG
AAGAGTTTATAATGTTGCTAGTCCGAATTCACTTTGGCATATTGATGGTC
ACCACAAGTTGATTCGCTGGCGGTTCGTAATCCATGGTGGTATCGACGGA
TACACGAGAAGGATAACTTATCTCCACTGCAGTGATAACAATCGTGCTGG
CACAGTTTTAACATTATTTGAGAATGCTGTCCGAAATTTTGGTCTCCCAT
CAAGAGTTCGAAGTGATATGGGAACGGAAAATGTAGACGTAGCCAGATTT
ATGGAGAGGAACAGGGGGCATAATAGAGGTAGTATTATTATGGGATCATC
CGTCCATAACCAGCGCATTGAGCGATTATGGCTGGACGTCAAGCGGCTTG
TTGTTGTTCGCTTTCAATCCATATTCTACTTCCTGGAAGATGAAGGTTAC
TTGGACCCTATTGACGAATTGCATTTGTATATCTTGCATTTGATTTTTCT
CCCCATTATTAATATAGCTTTAGACGAGTTGGCAAGAGATTGGGACAATC
ATCCGTTAAGTAGTGAAAATAACTTTTCTCCTGGGCAGTTGTGGCACCTT
GGCCTGATGAGGTATCGAGACGAAAACCCAAACGGCTACGCTCAGCTTCA
AAATCCTAACTGGAATGAGTATGGTATTGACTACCAAGGACCAGTAGCAG
ATGACGAGGACTTGGGAATAGTCGTACCGAGAACCTATTATCCATTGACG
GCAGAGGAACAACGCCGTGTAAACGATATAATAGCTGGAGCCCGTCGAAA
TGACGAAGTCGAAACCTATATAAACGTTATAAATTGTTTAGAAAACTAAA
TGTCCAGAATTCCTGAGCATGCGCTGTTAAGATTACCCACAATACCTTTC
TTAATGTCCAAATCACAAACACAAATAAACATGGCGGATGAAGTGGTAGG
AGACGTAGTTTCATTCTTGGATAAACTTCCTGATGAGTTTCGAGATATAC
ATTCTCGTATTGATGCGATGCAAGCTTTAGAACATTGTCAGATTAGATTG
GAAAATGTTACAAACATGCTGAATTTACTGAACGATTTACTTAAGAATGA
AAACAACCAGTTAATTATTGATTCAATGCAATCCCTCTTGAGGACAGCAC
AAGATGCAAGCCATAGATTGAGTGGTTTGCTAGTGAACCGTCGTCATCAA
ACTAACCAGACTCCTAGTATGGGAAGACCGAGAAAGGAGTTAACAGTGGA
TGAGATAACTAATGGTTTTGAGATCTTCAGGAACTGGAAAGTTGTGGCAT
GGACATTAGGTGTCTCTTACAGAACGTTATTGAGGAGGCGCAGTGAGCAT
GGAATAGATATATCTCAAGTAAGAGGCCCAAGAGTCACATATACAGTCAT
ATCCCATGAAGATTTGTGTAGTCAAATTCAAGAAATATTGCAAATTCTTC
CAGATGCTGGTGAAACGATGGTAATAGGTGCGCTGAGATCAAGGGACATA
TTTGTACAAAGAAGAAGAATTCGCGATGCAATCAATGATGTTGATCCTGT
TGGGCGAGCATTAAGACGGACAATATCAGTTGTTAGAAGAGTTTATAATG
TTGCTAGTCCGAATTCACTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040304-exon-sc0002383-1575043694:19125..20055 | TCONS_00040304-exon-sc0002383-1575043694:19125..20055 | Clytia hemisphaerica | exon |
| TCONS_00040304-exon-sc0002383-1575043694:17387..18390 | TCONS_00040304-exon-sc0002383-1575043694:17387..18390 | Clytia hemisphaerica | exon |
| TCONS_00040304-exon-sc0002383-1510915933:19125..20055 | TCONS_00040304-exon-sc0002383-1510915933:19125..20055 | Clytia hemisphaerica | exon |
| TCONS_00040304-exon-sc0002383-1510915933:17387..18390 | TCONS_00040304-exon-sc0002383-1510915933:17387..18390 | Clytia hemisphaerica | exon |
| TCONS_00040304-exon-sc0002383-1491911889:19125..20055 | TCONS_00040304-exon-sc0002383-1491911889:19125..20055 | Clytia hemisphaerica | exon |
| TCONS_00040304-exon-sc0002383-1491911889:17387..18390 | TCONS_00040304-exon-sc0002383-1491911889:17387..18390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002383 | supercontig | sc0002383:17387..20055 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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