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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040293 ID=TCONS_00040293|Name=TCONS_00040293|organism=Clytia hemisphaerica|type=transcript|length=2002bp
CgaaattgaaaaacttgaaaggGAGCTTGACGAAAAGCTACAGTCGGAAC
AACGCCTTGAAAATGAGATGGAAAAATGGGTAGTGAAATCACATGAACAA
GACTTGACTATCAACCGAATGAAGATTGAACTCGAACAGCAATTGGATAA
AGATAAACAAGATGGCGGATACGGGACCAATCGGATTGAAGCATTACATC
ATGAGGTGGCGTCAAAGGCTTTAAAGATTCAAGAACTCGAACATCGATTG
GTTCAAGCAGAACAAGATGGTGGATACGGGACCAATCAGATTGAAGCATT
ACGTCATGAAATAGGTTCAAAGAATTCGAAAATACAGACCTTGCAACAAG
AAATACAAATGCAAGAAGACCAGTCGCAAATTTTATTGTCTTCCTTGAAT
AAGAGGCGTGAAGAATCGAAACAATTTCTAACAatgcagcaaaaatttcg
tGACGAAATCGATAGTAAAGAAGACCTAATCCgaaaactcaatttcaaat
tgaaatcaAACGATCTTGACGTCACAGCGTCATCCTTGAATGTGTCACGT
GATGATGATTTAAGCCAATCAGAAGACGAGTTAGACAATAGGGATGTTTT
ATCGACCAATCAGGATGAAGATGTTTCAGATTCTATTGTTGAGCTTTCAA
AACAATTGAATAATGTTCGAACGCGCAATAAGAATTTGTCACGTGATCTT
GAAAAATGTCGCGGTGATTATATTCGCTTGAAGGAAGAAAAAGATCGTTT
GGATCTGACCAGCCAGAATTTAAAAGAGGATATAGAAGTCTACAAGGATC
GGATTACAGAGCTCCGTTCAATGTTACAAGCCTCACCTGATATGCCAAGT
GATGAAGATGGTTCGAATGCAGTTGGAGTTCGCACGAAGTTGTACGCAAG
TTATAAAGAGTTACGCGAAAAATCAATCGAGATTGCTTCTTTACGAATGT
GTATTGATATAAAAGATGACGAAATTAGAAGTTTACGAGAAGAGATTGAG
CAGTTACGAGGGATAAATGTTGAATTACGTGGTCAAAATGAGACAATATc
cgaaatcgatgaaaaactcGATTATTCAAAAACGAATAATGTTAAAGTTT
TGGTAGAGGAGCTGAATAATCGAGAACGAACCGAACAAGACTTACATAAC
CAGATTGCTGAGCTTCGACAACGTTTAATGcagaaatgtaaacaaagcgA
TAAATTACAATTAGAATTGAATAAGGTTACAAATCGATTTCGGGACATCG
AGCAAAAGTTATGTCAAAATGATCGAGACACGCGGGAACGATTTTTGCAC
GTGTTTGAGAACGACAATTCGGAAATCTCAGAAGTTACACCTCTGAATTC
AATCAAACTTTTCTCGGCACTTGATACACAAGACGCGTCAAATTTAACGG
GAGACGAAAGCGATACCGAAGATTTGTCGTTAAACGAGAATTTTACGAGG
GACGACGATTGCGAGATCAGTCGGTTACGAGAATTACAATTGAAAACACA
AGAACAAAACTTATTTTATCAAGAGCAAGTGAAATCATTACAAAACGAAA
TCCAGCGAATTAAACATTCCAATAAAACGACAAATAACGAAAACGAGAAT
TTACAACGACTATTAACGGAACTACAAATTCGTTTACAACAACTTGAGAC
GACAAAGACAGACGTCTTGAACGAACTTCAAAAAGGACGCGACGAAAACC
TGATTTTGGAAATTCAAATCAATCAGAGAGAAGAAAGACACAAAGTGGAA
CTCGAGAATTTGAAAACgtgtttcaaaaatgttgaaacgGAACACATGGC
GTCCATTAAAAAGAGAATGGAAACTAGTTTCcaggaaaaaattgttttcc
aaGTTAAAGCTAAACAACTGGCTAATGAAGTGAAACGCAAGGACTTGGAA
ATTGAAACTCTTAAGAAACGCGTACGACAATAATTGACCGCCCGCGCGTA
CAGTGATGGTTTACAAATATAGGATTTTGAAACCTGGACTTCATTTCATT
NN Run BLAST on NCBI transcript from alignment at sc0002381:10442..13584+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040293 ID=TCONS_00040293|Name=TCONS_00040293|organism=Clytia hemisphaerica|type=transcript|length=3143bp|location=Sequence derived from alignment at sc0002381:10442..13584+ (Clytia hemisphaerica)
CgaaattgaaaaacttgaaaggGAGCTTGACGAAAAGCTACAGTCGGAAC
AACGCCTTGAAAATGAGATGGAAAAATGGGTAGTGAAATCACATGAACAA
GACTTGACTATCAACCGAATGAAGATTGAACTCGAACAGCAATTGGATAA
AGATAAACAAGATGGCGGATACGGGACCAATCGGATTGAAGCATTACATC
ATGAGGTGGCGTCAAAGGCTTTAAAGATTCAAGAACTCGAACATCGATTG
GTTCAAGCAGAACAAGATGGTGGATACGGGACCAATCAGATTGAAGCATT
ACGTCATGAAATAGGTTCAAAGAATTCGAAAATACAGACCTTGCAACAAG
AAATACAAATGCAAGAAGACCAGTCGCAAATTTTATTGTCTTCCTTGAAT
AAGAGGCGTGAAGAATCGAAACAATTTCTAACAatgcagcaaaaatttcg
tGACGAAATCGATAGTAAAGAAGACCTAATCCgaaaactcaatttcaaat
tgaaatcaAACGATCTTGACGTCACAGCGTCATCCTTGAATGTGTCACGT
GATGATGATTTAAGCCAATCAGAAGACGAGTTAGACAATAGGGATGTTTT
ATCGACCAATCAGGATGAAGATGTTTCAGATTCTATTGTTGAGCTTTCAA
AACAATTGAATAATGTTCGAACGCGCAATAAGAATTTGTCACGTGATCTT
GAAAAATGTCGCGGTGATTATATTCGCTTGAAGGAAGAAAAAGATCGTTT
GGATCTGACCAGCCAGAATTTAAAAGAGGATATAGAAGTCTACAAGGATC
GGATTACAGAGCTCCGTTCAATGTTACAAGCCTCACCTGATATGCCAAGT
GATGAAGATGGTTCGAATGCAGTTGGAGTTCGCACGAAGTTGTACGCAAG
TTATAAAGAGTTACGCGAAAAATCAATCGAGATTGCTTCTTTACGAATGT
GTATTGATATAAAAGATGACGAAATTAGAAGTTTACGAGAAGAGATTGAG
CAGTTACGAGGGATAAATGTTGAATTACGTGGTCAAAATGAGACAATATc
cgaaatcgatgaaaaactcGATTATTCAAAAACGAATAATGTTAAAGTTT
TGGTAGAGGAGCTGAATAATCGAGAACGAACCGAACAAGACTTACATAAC
CAGATTGCTGAGCTTCGACAACGTTTAATGcagaaatgtaaacaaagcgA
TAAATTACAATTAGAATTGAATAAGGTTACAAATCGATTTCGGGACATCG
AGCAAAAGTTATGTCAAAATGATCGAGACACGCGGGAACGATTTTTGCAC
GTGTTTGAGAACGACAATTCGGAAATCTCAGAAGTTACACCTCTGAATTC
AATCAAACTTTTCTCGGCACTTGATACACAAGACGCGTCAAATTTAACGG
GAGACGAAAGCGATACCGAAGATTTGTCGTTAAACGAGAATTTTACGAGG
GACGACGATTGCGAGATCAGTCGGTTACGAGAATTACAATTGAAAACACA
AGAACAAAACTTATTTTATCAAGAGCAAGTGAAATCATTACAAAACGAAA
TCCAGCGAATTAAACATTCCAATAAAACGACAAATAACGAAAACGAGAAT
TTACAACGACTATTAACGGAACTACAAATTCGTTTACAACAACTTGAGAC
GACAAAGACAGACGGTGAGTGACTACCGACTATTCACTCGTTCGTTGTCT
TGACTACAAATGACGCACGCACAAACTTCACTTGAACCTACTTCTTTATT
TAAAAGGCATGTTCTTAATCTGTTCTTAATACATCTTTTACATCTTATAA
AGCTGTCCCATTTTATAGACCGATtccgtgtgacgtcattttcacccacg
atCAGCCATTTTGGTAGAACGAATATGTACAGGATGATTTAGTAACACCT
TAATAGCTCAAAGTcttcaaatatttccctttGGACCTGCGcatagtttt
ttgtttgttttggctTCGTGGGTGAAATttatgtcagttaggaacaggca
GTTTGCTTGAGGTTTGCTTGAGGATAGTCCTTAACTGGATTTTGGCGAAT
CGGtctatatccatacagggggtggacaacccttttcaaacaataaaata
acTTTCGCgtggacgaaaaatcgcgaaattcacgacatttactttcgcga
atcaagacgtaaaattgagaattttcacatgaaaaaatggcttagaggga
caaatacttcttggattggcttgaaacatttNaattgagaattttcacat
gaaaaaatggcttagagggacaaatacttcttgggttggcttgaaacatt
tgtctttTGACTTATTACTCTTTTAGCTGGctaaaaagttacattttatt
taaagtttgaagttttgcagattttctattttgtcaagaatttttcgcga
gcataaactttcgcgaatggcccttcctagaatttttaaagacatttact
ttcgcgaaaagggccaaaattcgcgaaaatcgcgaaagtttctgctcgcg
aaagtttgtacgcctaaagtacttgaaaatgtgtggatacccccagaaaa
tgacagaatttgtaAAGACCTTGGTAAATTTGCTCTTTAAATTTGCTCGT
GTTGAAAATAACAACACCCGAAAAAAGCCGGGTTTTGACGGCTTTCTTTG
GGTGCGTTCGTTAGAAAacatgacgtcatcttgacttacacTTATCAAGA
ATTGatcttttttttgagaattttaaatcttttaatCGATCTTTATCTTA
CAGTCTTGNttttttttgagaattttaaatcttttaatCGATCTTTATCT
TACAGTCTTGAACGAACTTCAAAAAGGACGCGACGAAAACCTGATTTTGG
AAATTCAAATCAATCAGAGAGAAGAAAGACACAAAGTGGAACTCGAGAAT
TTGAAAACgtgtttcaaaaatgttgaaacgGAACACATGGCGTCCATTAA
AAAGAGAATGGAAACTAGTTTCcaggaaaaaattgttttccaaGTTAAAG
CTAAACAACTGGCTAATGAAGTGAAACGCAAGGACTTGGAAATTGAAACT
CTTAAGAAACGCGTACGACAATAATTGACCGCCCGCGCGTACAGTGATGG
TTTACAAATATAGGATTTTGAAACCTGGACTTCATTTCATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040293-exon-sc0002381-1491911889:10442..12105 | TCONS_00040293-exon-sc0002381-1491911889:10442..12105 | Clytia hemisphaerica | exon |
| TCONS_00040293-exon-sc0002381-1510915933:10442..12105 | TCONS_00040293-exon-sc0002381-1510915933:10442..12105 | Clytia hemisphaerica | exon |
| TCONS_00040293-exon-sc0002381-1575043694:10442..12105 | TCONS_00040293-exon-sc0002381-1575043694:10442..12105 | Clytia hemisphaerica | exon |
| TCONS_00040293-exon-sc0002381-1491911889:13247..13584 | TCONS_00040293-exon-sc0002381-1491911889:13247..13584 | Clytia hemisphaerica | exon |
| TCONS_00040293-exon-sc0002381-1510915933:13247..13584 | TCONS_00040293-exon-sc0002381-1510915933:13247..13584 | Clytia hemisphaerica | exon |
| TCONS_00040293-exon-sc0002381-1575043694:13247..13584 | TCONS_00040293-exon-sc0002381-1575043694:13247..13584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002381 | supercontig | sc0002381:10442..13584 + |
Blast
The following BLAST results are available for this feature:
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