TCONS_00040282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040282
Unique NameTCONS_00040282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040282 ID=TCONS_00040282|Name=TCONS_00040282|organism=Clytia hemisphaerica|type=transcript|length=514bp
AAAAGATAATTTTGCATCGATTTTTATACCCAGAAGTTTCACGACATCGA
CGTTCTTAATGTTGTTTTTACCAACAGGAAGAGAAACATCAGTGTTAAAA
GTACCGGGGTAAATAAGTTGAAACTTGGAGGGATTTGCAACCATTGAGTT
ATGCTTGAACCAATCAAGAACAATGCTTAGTTGGTGTAAAAGGTTTGCGT
TAACTTCATCCAAGTTTGATCCAGAAGAAGATAAAGTATTatcatctgca
aaatttaaaatttcatctatgaTATAAAATAGATCGTTTATGAATATATT
AAAAAGTAATGGCCCAAGGATAGACCCTCGGGGTACTCCTAATAAAATAT
CGAGCCATGAACTTAAATGAGAACCTATACGAACTCTGTGCTTCCTATTG
CTTAAATAGCTGTGCATTAATTGGACGGCACTCTCACTGAGCCCGTATGC
CGAGAGTTTTGCCAAAAGTAAGTTGTGAGGTAAACAGTCAGAGGCTTTAG
ATAAGTCaattaag
Run BLAST on NCBI

protein sequence of TCONS_00040282-protein

>TCONS_00040282-protein ID=TCONS_00040282-protein|Name=TCONS_00040282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
LIDLSKASDCLPHNLLLAKLSAYGLSESAVQLMHSYLSNRKHRVRIGSHL
SSWLDILLGVPRGSILGPLLFNIFINDLFYIIDEILNFADDNTLSSSGSN
LDEVNANLLHQLSIVLDWFKHNSMVANPSKFQLIYPGTFNTDVSLPVGKN
NIKNVDVVKLLGIKIDAKLSF
Run BLAST on NCBI

transcript from alignment at sc0002375:25411..25924

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040282 ID=TCONS_00040282|Name=TCONS_00040282|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at sc0002375:25411..25924 (Clytia hemisphaerica)
cttaattGACTTATCTAAAGCCTCTGACTGTTTACCTCACAACTTACTTT
TGGCAAAACTCTCGGCATACGGGCTCAGTGAGAGTGCCGTCCAATTAATG
CACAGCTATTTAAGCAATAGGAAGCACAGAGTTCGTATAGGTTCTCATTT
AAGTTCATGGCTCGATATTTTATTAGGAGTACCCCGAGGGTCTATCCTTG
GGCCATTACTTTTTAATATATTCATAAACGATCTATTTTATAtcatagat
gaaattttaaattttgcagatgatAATACTTTATCTTCTTCTGGATCAAA
CTTGGATGAAGTTAACGCAAACCTTTTACACCAACTAAGCATTGTTCTTG
ATTGGTTCAAGCATAACTCAATGGTTGCAAATCCCTCCAAGTTTCAACTT
ATTTACCCCGGTACTTTTAACACTGATGTTTCTCTTCCTGTTGGTAAAAA
CAACATTAAGAACGTCGATGTCGTGAAACTTCTGGGTATAAAAATCGATG
CAAAATTATCTTTT

Coding sequence (CDS) from alignment at sc0002375:25411..25924

>TCONS_00040282 ID=TCONS_00040282|Name=TCONS_00040282|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0002375:25411..25924 (Clytia hemisphaerica)
ttaattGACTTATCTAAAGCCTCTGACTGTTTACCTCACAACTTACTTTT
GGCAAAACTCTCGGCATACGGGCTCAGTGAGAGTGCCGTCCAATTAATGC
ACAGCTATTTAAGCAATAGGAAGCACAGAGTTCGTATAGGTTCTCATTTA
AGTTCATGGCTCGATATTTTATTAGGAGTACCCCGAGGGTCTATCCTTGG
GCCATTACTTTTTAATATATTCATAAACGATCTATTTTATAtcatagatg
aaattttaaattttgcagatgatAATACTTTATCTTCTTCTGGATCAAAC
TTGGATGAAGTTAACGCAAACCTTTTACACCAACTAAGCATTGTTCTTGA
TTGGTTCAAGCATAACTCAATGGTTGCAAATCCCTCCAAGTTTCAACTTA
TTTACCCCGGTACTTTTAACACTGATGTTTCTCTTCCTGTTGGTAAAAAC
AACATTAAGAACGTCGATGTCGTGAAACTTCTGGGTATAAAAATCGATGC
AAAATTATCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024452XLOC_024452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040282-exon-sc0002375-1491911889:25411..25924TCONS_00040282-exon-sc0002375-1491911889:25411..25924Clytia hemisphaericaexon
TCONS_00040282-exon-sc0002375-1510915933:25411..25924TCONS_00040282-exon-sc0002375-1510915933:25411..25924Clytia hemisphaericaexon
TCONS_00040282-exon-sc0002375-1575043694:25411..25924TCONS_00040282-exon-sc0002375-1575043694:25411..25924Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040282-proteinTCONS_00040282-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002375supercontigsc0002375:25411..25924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.880045	0.907446	1.51726	0.704189	7.83115	4.99703	4.43403	5.11871	3.34671	5.1164	3.2518	4.15675	0.634964	1.35687	1.25693	1.49635	0.62966	0.895016	2.03697	1.89073	1.21697	0.803005	0.266742	0.485014	0.583746	0.9755	1.34581	0.851105	0.860761	0.854645
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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