TCONS_00040273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040273
Unique NameTCONS_00040273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040273 ID=TCONS_00040273|Name=TCONS_00040273|organism=Clytia hemisphaerica|type=transcript|length=860bp
agctgCCCCATCAGTCAATGTGTTGGTCGCACGACTGAATGAATTGGAGG
AGCGAGTTAGATCTTTTGAAGAGCAGAAGGAAAACAGAAGGAGAGTGGAA
AAAGTTAAAGTCCATGTTAGGAAGACAACTAAGgaTTATGTCAAGGTGTG
TACACGCAACACTATCAATGATCAGACGAATGGCCTTGATTGGGATTTAA
ACATTGGTGTCTTCACCGGATCTAATGACCTGACATCAACaaagatttga
gaaaatgtcaaagcATTAGATTGCAAAGTAACAAATGTAGAAGTACAAGa
gACTATCAAAACCTACTTCAATTCGTCGAAGTCATACATGGCAAGAAAAT
CTGATAAGTTTTTGCGCGAAGCTGCCAAAATTGGAAGGAAGAAAACAAAA
CATAAAAACCGAAAAAACGCCCTGGAAAATTCGACAACAATACCTCAAGT
AGATAAACTGCTCTTACATTGGACTTCATGTCATCAGAAGATGAGCGTGA
TGAGGATGACTTggaacattttgaaattcgcCCCTTGAGATGGCGAACGC
AGAAGTGCGACAAATACTTTAAATCTTTGGATAAGCGACACAGAAAGAAA
CAATCAAAAAGGTCTCGTCAACTAACTGTCGTACGGAAAATGGGGCCGTA
CAGTAGCAGAAAATCACCAGAACTGAACGACTCTAACTCGTGGGCAATTA
AAAATAACTAAGACTTTTTATTCTTCTGaccatttgaaagctctttaTAA
ATGATAAAGAAGACATTCAAGTGTCGATTTCTTTACTGATATTTAGTTAT
TAGAGCTAGCAGCCATTTCGACCTTCCTGATCAAAAAGTACGCAAAAAGC
TCATATTTTG
Run BLAST on NCBI

transcript from alignment at sc0002372:7630..9657-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040273 ID=TCONS_00040273|Name=TCONS_00040273|organism=Clytia hemisphaerica|type=transcript|length=2028bp|location=Sequence derived from alignment at sc0002372:7630..9657- (Clytia hemisphaerica)
AGCTGCCCCATCAGTCAATGTGTTGGTCGCACGACTGAATGAATTGGAGG
AGCGAGTTAGATCTTTTGAAGAGCAGAAGGAAAACAGAAGGAGAGTGGAA
AAAGTTAAAGTCCATGTTAGGAAGACAACTAAGGTAATCATGAATTTCCT
GTCTTTTTTATCATATCAAGGCTAACTCAGGGCAAATAAGTGTCACTCAT
CTGTCAATGTCCACTGAATAAGCTGTGAGACTGTCAGAAAATCGTTTGTG
TCAGTCAGCAAAAGTTTCTTGATTGACCATCTGGATTATAAGTTTGTCCA
ACATGATTTAAATCAAACACAATCAGACAATGACCAAAAAGCCTTAGAAA
ATTTGTTTGCAGCCCTGCTGACTATATTTTTATACTGAATTTGATTAAAT
GAAACCATTTTTTCTTTTTGTTTAGGATTATGTCAAGGTGTGTACACGCA
ACACTATCAATGATCAGACGAATGGCCTTGATTGGGATTTAAACATTGGG
TAAAATTTGTATTTTCTCTGTGCTAATTTTGTTTCATGGTGTTTTTTTCC
ATCATTGGTGGCATTGAACTATTTTTATGTGCAATATATTTTTTTGATTT
CTGAATAATTTTTAATTGTTCCAAACCACTAAGAGTCTCAGATTAGCTCT
ATATAATGATAAATTATATTTATTCTAGATTTAACCTAATTTCTTATAAA
TTATTGAATTTTTAATATTGAATTATTTTATCAGTGTCTTCACCGGATCT
AATGACCTGACATCAACAAAGATTTGAGAAAATGTCAAAGCATTAGATTG
CAAAGTAACAAATGTAGAAGTACAAGGTATAATAATTGTATAAATAAAAT
TGTTTTACCTTGCAAAAATTAATTAAAGTAAAAATTATTGCAGTGGAGAT
TCTTTACAAGCTAGCTGGCAATTATTCTGTATATTCGATTGACTCTTGGA
TTGCGTGAAGCTGCCAAAATTGGAAGGGAGAAAGCAGTAAGAATATTTGT
CTCCTGTTTTGATATTCTTTTTGTATTACAAAATCACGAGTGATAAACTG
TCTTTTCAAAGCAGCATATTTTACTTTAATTATAGTTATTAGATTAGATA
ATTGTTGATTTCTGGTCACTTCTCTTTTTAAAAAATATTAAAATCTTTGT
TCTTACATTGTATTTACACAAAGGTTTGCTTTGTTTTCATTTTAGAGACT
ATCAAAACCTACTTCAATTCGTCGAAGTCATACATGGCAAGAAAATCTGA
TAAGTTTTTGCGCGAAGCTGCCAAAATTGGAAGGAAGAAAACAGTAAGAA
TATTTGTCTCCTGTTTTGATCACAAATCAAATAATTTTTTTTAAAGCAGG
TGGGGTCAAGAGTAATTAGCAAAAGTAGTTTTTAAAAACTTGAACTTACA
TGCAAGACTAATAATAAAAAGATATAGTCACAAATATAACATGGTTTGTG
GGACTGTTTTGAAAGAGTTAATCATTCTGTTGCTGTCCAGAGCAATATTT
TAGTTTAAGAAATGATTTGACTGAATGGAAATCAGGAAACCTAATAATTC
ATTTCCTTTCGCTAGAAACATAAAAACCGAAAAAACGCCCTGGAAAATTC
GACAACAATACCTCAAGTAGATAAACTGCTCTTACATTGGACTTCATGTC
ATCAGAAGATGAGCGTGATGAGGATGACTTGGAACATTTTGAAATTCGCC
CCTTGAGATGGCGAACGCAGAAGTGCGACAAATACTTTAAATCTTTGGAT
AAGCGACACAGAAAGAAACAATCAAAAAGGTCTCGTCAACTAACTGTCGT
ACGGAAAATGGGGCCGTACAGTAGCAGAAAATCACCAGAACTGAACGACT
CTAACTCGTGGGCAATTAAAAATAACTAAGACTTTTTATTCTTCTGACCA
TTTGAAAGCTCTTTATAAATGATAAAGAAGACATTCAAGTGTCGATTTCT
TTACTGATATTTAGTTATTAGAGCTAGCAGCCATTTCGACCTTCCTGATC
AAAAAGTACGCAAAAAGCTCATATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024443XLOC_024443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040273-exon-sc0002372-1575043694:9525..9657TCONS_00040273-exon-sc0002372-1575043694:9525..9657Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1575043694:9159..9232TCONS_00040273-exon-sc0002372-1575043694:9159..9232Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1575043694:8832..8923TCONS_00040273-exon-sc0002372-1575043694:8832..8923Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1575043694:8365..8462TCONS_00040273-exon-sc0002372-1575043694:8365..8462Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1575043694:7630..8092TCONS_00040273-exon-sc0002372-1575043694:7630..8092Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1510915933:9525..9657TCONS_00040273-exon-sc0002372-1510915933:9525..9657Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1510915933:9159..9232TCONS_00040273-exon-sc0002372-1510915933:9159..9232Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1510915933:8832..8923TCONS_00040273-exon-sc0002372-1510915933:8832..8923Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1510915933:8365..8462TCONS_00040273-exon-sc0002372-1510915933:8365..8462Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1510915933:7630..8092TCONS_00040273-exon-sc0002372-1510915933:7630..8092Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1491911889:9525..9657TCONS_00040273-exon-sc0002372-1491911889:9525..9657Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1491911889:9159..9232TCONS_00040273-exon-sc0002372-1491911889:9159..9232Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1491911889:8832..8923TCONS_00040273-exon-sc0002372-1491911889:8832..8923Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1491911889:8365..8462TCONS_00040273-exon-sc0002372-1491911889:8365..8462Clytia hemisphaericaexon
TCONS_00040273-exon-sc0002372-1491911889:7630..8092TCONS_00040273-exon-sc0002372-1491911889:7630..8092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002372supercontigsc0002372:7630..9657 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.926657	0.903637	0.149887	0	6.96233	8.18206	3.06351	3.66469	1.33865	1.05585	1.34118	0.528985	0.880415	0.91432	2.55576	1.93604	5.85026	2.44459	1.2665	1.03079	1.15193	1.77336	0.910703	1.24194	0	0	1.99671	1.16233	0.440793	0.598798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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