TCONS_00040269 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040269
Unique Name	TCONS_00040269
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	926

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002370:9254..15650+

transcript sequence

>TCONS_00040269 ID=TCONS_00040269|Name=TCONS_00040269|organism=Clytia hemisphaerica|type=transcript|length=926bp
CGAAAGTTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATG
CTTTGTATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGG
TGATTATGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAA
TTATCACCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGT
ATCCTTATGGTAGTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCAT
GGCTCGTTACATGAAGCAAGCtactaaagaaaagaaaatcaccGGTAAAC
CGGCTTGGTTCCCTCTTCATCAAGGTTTGATGATGTCATGTGTTGTTATT
TTCTTCATCGCTTTCATTGTCATCTTGGTGGAAAAACAAGGATGGGCTGA
GAGTGCAGGAACTCATGGTATTCTGGGATTAATTGCTATCATTCTTGGCT
TAATTCAGCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGg
cgtttcattttcaattggTTTCATAGAAGTTTTGGAATGATTGCGTGGTT
ATTAGCCGGTTTAAGCATCATTTATGCTTTCTATGAACATTTACAAGAAA
GTTACACAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATT
TTATTGGACATCGTTATTTGTGCTTCTTCGAAAAATTCTGCATCAGCTGA
TGTGGCGTACAGCGGCACAAATAATATGGTAGATGTCAAACACACTTCGT
CAAATAGCGTAAGTAAAGTTCTGAggggggttgtaggggttcgaaatatc
gttttcccgtcaaaattttggctgaatccCAGattcccgaaaattgaaaa
aaatgataacaccgtcacaccggtttgtagaaGTCAAAATACCGGAATAT
TGACAAGAAATAATGCTAATCACCGT

Run BLAST on NCBI

transcript from alignment at sc0002370:9254..15650+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040269 ID=TCONS_00040269|Name=TCONS_00040269|organism=Clytia hemisphaerica|type=transcript|length=6397bp|location=Sequence derived from alignment at sc0002370:9254..15650+ (Clytia hemisphaerica)
CGAAAGTTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATG
CTTTGTATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGG
TGATTATGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAA
TTATCACCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGT
ATAGTGCGGggaatatgatacaaaatataCACCAGTATTCAGTATTTATC
TTTTGAAATCAGTAAAAAACAACTGCGCGAACTTACCGTCagggaaattt
tgaaagtaaCTTTTATCGTTCGTTGTACATTTTCCATCCGTAACTTTTGA
GTGAGAGGGCAAGGTAGATCTTTCGCCTTAACTTTCGTTTGCTTCAGTTT
GCTTTCAATTatcaatttgtttgataaaagtcCAGAGCTTGAAAGTTATT
TAATATTGGATCAATAAAATTCGATGGACAAAAATCCGAAGGATTTCGTA
ACAGGATCAAAATGACGTATACAGGTCTGGTTTTGGCAGCCGTAACTGTA
ACAAATATTTCTATTCTTTATTCTATTCTTTACAAGGTATCCTTATGGTA
GTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGGCTCGTTACAT
GAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCGGCTTGGTTCC
CTGTGAGTGATTTTTAAGCGTTTGAAACGGGGGAGGGGTTAAGCTTAAAG
CTGTAATGTCCACATTGTTTACAGTTGTGTCCAGTAGTACTTACAATACA
CAGTAGACGTCTGTCTGCTCACGCTCGAACAAAGAAGTTTTTTATATGAA
TTATGAAGCatactttcttttataagaactagttAGTTTTATTCATtggg
cactttgagcctcagaTTGtttttatcctgttcttatttatagggtgaaa
TTGAAGTATTTTAGGATTTATACCcgcaatttttactactttgaccctaa
attgcttgaatttGAGTAATTCTAGgctcaggattgttcttaaaCTGCTC
TTAtcttttggcgattttgagtctcattgttcttataaaattgtttaaaa
aaacaaaaagtgtaGAGGTCTGAATGTCTGACTTATTGGAGCAAAgattt
cattgtatttttatcgataaatattttgtttcagCTTCATCAAGGTTTGA
TGATGTCATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGGTG
GAAAAACAAGGATGGGCTGTGAGTGTATTCCCTTTCCTTTTTCATACATT
CTTTCAAAAATTGGGATGAAGTTATTTGGCGAAAGTGTAAATGATCCATG
GTACCTCCTCCGGAAATCGGCaagattaattttgattttttgacatCGAT
TGTCACCTTGCCGAAATAGCGAGTTGTATGTATGCGTGTTTTTCTGTgac
ggagacggttagcttctgatttgtcttgatcctgactgactgaggacgct
TGTAAATCAGCATTTTTCGTTTTGGCACAGGTCAAAACGGCGTGTTATTC
AGTCACTCCACCGTCctaaaaagtgcaaatataccTAAACTCGCTTTAAA
CTCGTCCCGATATTAGTAATATGATAAATTAAACTCTACCAAAGGGAAAA
AGAGCAAAGGATTTGGAAGTTCTAGAATTAAAGaacataaaaaagtttga
atcGCACCTTACGATGGGAAACCTCACCCATGAACAAGTtaacaatttat
ttttctttgtttatagGAGAGTGCAGGAACTCATGGTATTCTGGGATTAA
TTGCTATCATTCTTGGCTTAATTCAGGTAACAACAGAGCTCTTTAATATC
AtgtacatttttttcaagtctTAACAGagtgtgtcacagacccactggga
cgcCAGCCCTActagaaaatttgacaaaaatttcgtccccggtgggaaaa
agcCCTCGAATTTCAggcccactgggaaattgacctTGATATcctcaatg
tttaaaaattgtactctaaAACCACCCCCTCTGGATTTTTGGACCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttaaat
gcataaccaggtaggtccataaaagtatcacttgtttaactttggaacaa
tagaatttccatccCCATCGGGAATTCAATAGGAATGtatatccccactg
aggaaaaaagttccagtggggctgtgagacaggggtgttataaaatttag
aattaataacattttaaaagaCTGGCTTATTTCTTCTTACCTAGGAcaag
accaaaacaacgtctagtctgtccatatcttctgacgactggacgaaATG
AAGATTAAACAATATGATATCAATTTTAatattatttcgtagaggtcgat
ggacctgtgaaatataattttctgattgtaataaataaattatttttatt
ttgcagCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGGTA
ACAGAATAACTCCCTTTTTTCAATACAATGCAAATAGCTCTACCTGTGAT
TTGCGTCTCTGGTGTCGAGCACTAAGATAATCTGAAAGTAGTATGGGTTG
ATTGTAATGGTTTATTGACACAAAATTATTTACACCACATATCTTGTATA
ATTGGCGTTTCtcgatgaaaataattattttatttttgtatttttccatG
TCAggcgtttcattttcaattggTTTCATAGAAGTTTTGGAATGATTGCG
TGGTTATTAGCCGGTATACTTTTCGTTTTCTTCTGCTACTATACCTGGAG
AGAGTAGAGAATTCAAGTGTTGTTGTGTCTACCAAGCCTCGCTTTTTAct
gtgaaaaaaagaaaacacttctttaggcgtacaaactttcgctaACAGCA
ACTTTCGCGAGGttgaaaaatcgcgaaatttatgatattcactttcgcga
atttgacgaaaaaatctttttagcgagcataaacttttacGAATCAAGAT
ATAAAAGATTTCACACAAAAAgttttcacacaaaaatatGACTTgaaggg
acaaatacttcttgaacaGGATTGAAACGTTTGTCTTTTTGACTAATGAG
GCTttaacaggctaaaaagtgccataaatcttacattttattttaggcta
gaagttttattttctatttttgttaaaaagtttttgtgaacataaacttt
cgcgaatggcgcCTTCAACAATTTACTTCAagccatttactttcgcgaaa
aaaggTAAAGTTCGCAAAGATTGCGAAAGTTTCAAATGGTGTATGATTTG
AGAGCTTGGTAAAGTTTGAAAACTCACCAGGTTAAATCGTAGATAGATTT
CACTGACTTCACACTGGAGtagatttttgtttttacttacagtatataat
attttcaatttgtCTATTATAGGTTTAAGCATCATTTATGCTTTCTATGA
ACATTTACAAGAAAGTTACACAGAGATGTTGGTATTCATGATAGTGGTCG
TTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAAAAT
TCTGCATCAGCTGATGGTAAGATTTCcctcttttctttttcgtttatTTG
TTTTCTCTGGTTTCCATCAAAAGCTAACTCAAAGCAAATTTATTGCTCCA
GTGTAGTTTTATTATGACTCCAGCAGTTTGCGTAAATGCGTGAGTGGGCA
AATGGGcgcgaatttttttaaatgaaaatccGATTTAGTGCAGTTTTCCC
CCAGTTTTAGAAGTTACTTTGgtttccccaattttttaagattttcttaa
aaatcgggtTTGCCTGGCTTTTGATAAAGTGCACAAAGCGTGAATCCTAT
TATTGCGATGGAAAAGTAAGGCTGATTATACATGTGTTACAATTGAATCC
TTATATTAACGCGTCTTTTATAGTGGCGTACAGCGGCACAAATAATATGG
TAGATGTcaaaccccggggggggcactcgatctgaaaacgaccatacgtt
cggcccaaaatttggcttctaaaatcggacccttacagtgcagtgaatta
cCANTTCTCTCACgggcgctgaatatttaattagtgtttacattatttga
ttgacagttttattataagtaagaaccgactagtttactagtctactaTA
CCTGGAGAGAGTTCAGAATTCAAGTGTTGTTGTGTCTACCAAGCCTCGCT
TGTTActgtgaaaaaaagaaaacacttctttaggcgtacaaactttcgct
aACAGCAACTTTCGCGAGGttgaaaaatcgcgaaatttatgACATtcact
ttcgcgaatttgacgaaaaaatctttttagcgagcataaacttttacGAA
TCAAGATATAAAAGATTNAAATTTATGACATtcactttcgcgaatttgac
gaaaaaatctttttagcgagcataaacttttacGAATCAAGAtataaaag
attaaaattttcacacaaaaatatGACTTgaagggacaaatacttcttga
acaGGATTGAAACGTTTGTCTTTTTGACTAATGAGGCTttaacaggctaa
aaagtgccataaatcttacattttattttaggctagaagttttattttct
atttttgttaaaaagtttttgtgaacataaactttcgcgaatggcgcCTT
CAACAATTTACTTCAagccatttactttcgcgaaaaaaggTAAAGTTCGC
AAAGATTGCGAAAGTTTCAAATGGTGTATGATTTGAGAGCTTGGTAAAGT
TTGAAAACTCACCAGGTTAAATCGTAGATAGATTTCACTGACTTCACACT
GgagcagatttttgtttttacttacagtatataatattttcaatttgtCT
ATTATAGGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAG
TTACACAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTT
TATTGGACATCGTTCTTTGTGCTTCNAGATGTTGGTATTCATGATAGTGG
TCGTTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAA
AATTCTGCATCAGCTGATGGTAAGATTTCcctcttttctttttcgtttat
TTGTTTTCTCTGGTTTCCATCAAAAGCTAACTCAAAGCAAATTTATTGCT
CCAGTGTAGTTTTATTATGACTCCAGCATTTTGCGTAAATGCGTGAGTGG
GCAAATGGGcgcgaatttttttaaatgaaaatccGATTTAGTGCagtttt
ccccgatttttagAAGTTTCTTTGgtttccccaattttttaagattttct
taaaaatcgggtTTGCCTGGCTTTTGATAAAGTGCGCAAAGCGTGAATCC
TATCGTTGCGATGGAAAAGTAAGGCTGATTATACATGTGTAATTGAATCC
TTATATTAACGCGTTTTTTATAGTGGCGTACAGCGGCACAAATAATATGG
TAGATGTCAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAggggg
gttgtaggggttcgaaatatcgttttcccgtcaaaattttggctgaatcc
CAGattcccgaaaattgaaaaaaatgataacaccgtcacaccggtttgta
gaaGTCAAAATACCGGAATATTGACAAGAAATAATGCTAATCACCGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024441	XLOC_024441	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002370	supercontig	sc0002370:9254..15650 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.255506	0.0916742	0	0	0	0	0	0	0	0	0	0	0	0	1.52698	0	0	0	0.165594	9.73444e-06	0.277984	0	0	0	0	0	0.677995	0.815474	0.0459678

Blast

[Close]

BLAST of TCONS_00040269 vs. Swiss-Prot (Human)
Match: FRRS1 (Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.575e-16
Identity = 55/160 (34.38%), Postives = 86/160 (53.75%), Query Frame = 3

Query:   78 RISRHGLGDYATTAAFDLLKASGEIITTTGRMLQDKEVAHGILMVVAWIICSTIGIFMARYMKQATKEKKITGKPAWFPLHQGLMMSCXXXXXXXXXXXXXEKQGWAESAGTHXXXXXXXXXXXXXQPLMAMVRPAPDADRRFIFNWFHRSFGMIAWLLA 557
            RI +H      T   +D+  +   I  +   +L      HG LM VAW+   +IG+ +AR+ K    +  + G+ AWF +H+ LM +  V+  IAF++  + + GW+  AG H  LG I + L ++QPL+A+ RP     RR +FNW H S G  A ++A
Sbjct:  337 RIYKHSQQPLITYEKYDVTDSPKNIGGSHSVLLLK---VHGALMFVAWMTTVSIGVLVARFFKPVWSKAFLLGEAAWFQVHRMLMFTTTVLTCIAFVMPFIYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPPLHDPRRQMFNWTHWSMGTAARIIA 493

The following BLAST results are available for this feature:

BLAST of TCONS_00040269 vs. Swiss-Prot (Human)

BLAST of TCONS_00040269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FRRS1	1.575e-16	34.38	Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS...	[more]

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TCONS_00040269 (transcript) - C. hemisphaerica