TCONS_00040260 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040260
Unique Name	TCONS_00040260
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	362

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002368:3356..8905-

transcript sequence

>TCONS_00040260 ID=TCONS_00040260|Name=TCONS_00040260|organism=Clytia hemisphaerica|type=transcript|length=362bp
aaatggtaGCAGAGTGGCGCGAAACTATTTTGTTCTGGTTGGTATCGAAG
TACAAACTTTGCAAAagttaaagctatttcaaagtAAATCTTAACCTAAC
ATCATGATCCTTGCCACAAATCACTGATTAACTGTATGAAACGCTTTTGC
AGTTATTCTCGAAGAAACTGGTGAGTAAATTTTTGTGGTTCTTTGAGCAA
AAATGGACTAATCTTTTAACAACTCAACTCATGACATCTTGGTGGATCAC
AACTGAATAAAATGAAACACTGTCAAGAAGAACACTGAAAACATCAAACT
TCAAAACTGACAAGCATGACcagCTATAAAGAATCGACCTGTACATGAAT
TCAAAGCTCCAA

Run BLAST on NCBI

transcript from alignment at sc0002368:3356..8905-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040260 ID=TCONS_00040260|Name=TCONS_00040260|organism=Clytia hemisphaerica|type=transcript|length=5550bp|location=Sequence derived from alignment at sc0002368:3356..8905- (Clytia hemisphaerica)
AAATGGTAGCAGAGTGGCGCGAAACTATTTTGTTCTGGTTGGTATCGAAG
TACAAACTTTGCAAAAGTTAAAGCTATTTCAAAGTAAATCTTAACCTAAC
ATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCTA
TTTCAAAGTAAATCTTAACCTAACATCATGATCCTTGCCACAAATCACTG
ATTAACTGTATGAAACGCTTTTGCAGTTATTCTCGAAGAAACTGGTGAGT
AAATTTTTGTGGTTCTTTGAGCAAAAATGGACTAATCTTTTAACAACTCA
ACTCATGACATCTTGGTGGATCACAACTGAATAAAATGAAACACTGTCAA
GAAGAACACTGAAAACATCAAACTTCAAAACTGACAAGCATGACCAGGTA
TGTTTTTTTTTAACTTTTCAGTTCTATACCAGACTCTCCCACTCTATACA
ACCGATAACTTTTTCCCAACCATTGATGACCAATCAATAACTGATTGATT
GATTGGATATCGACTGATGGTGATGGAGAATCAAGCCTGTTCTATAAATA
ATTTGCTATATCTTTTTTTGCCAATGTTTTGTTCAATGGATAGGCAACCA
AACCTCACTTCTCAAAAATTAAAAAAGATTATCAAGTAAAGTTAATATTC
AGGGAAATTTTTTTCGATTTTTCAGATGACACCTGCGCAAAAATAAGTCT
GAATGGAAATCTGAAAAGGCGACCGTCCACATAGAACGTATGCACTAAGA
GGGAGGGGGATCTTCTCAAAAGCTTGTGCTTTTGAGAGGGGGGAGGGGTC
AAATGGAAATGTTACGTACTCGGGTAACTTAATGCATGTCCCAATTTCTT
CAAAAACTACTTATATTATATAAGTAGTTTTTGAAGATATTTCTACATTT
CTTTTTGTATATGACGTCATAATTAGGTTTTCTTAACCCCATTCAACCTA
GGCTTTTAGAGGCGGTTCAGAACTAGGGGAAAACTACGTACTTACTAGAG
GGGGTATAGCCATTTGTGTACGCTTGCGTACAGGGGGAGGGGGTACTTGA
TTTTCAACATCTTAGTGTGTACGTACTACGGGGACGGCCCCAAGGTCTAA
GCCGTGAATTTTTTTTTACAAGGTGTTATTCCAAATATCCTGTGTCAGAC
TTTCTGAAACACTGAGTTGAGCTATGAAGTCAATTTCTTTTTTAAATGAC
TAATTTTTCTAAAGTTTGCATTGAAAATGTTTTCAAAAATATTTTTCAGA
GGGTCTGAATCCTAAAAAATTGATTTTTGAGATTTTAAGTCAGGAAACCA
GTTTAAAAAAAATCTAATCAATTCATTGCATGCCAAACAACAATTTCCCT
GAAAATTTCAAGTAAAAGTATTTATCTGATCCGGAGATATTCCTGACAAG
GTACATGCAAACCTGAGAAAAATGTGGCTGCGTGTTAAAAGGCTGAACGG
TGCGATACAACGCAAACGAAATACAAACTAAAAGGTCCTCTTCAGTCACA
GTACAAAAATCAACAAAAACGTGTTGCGCTTAAGTCAGTAAACAAAGCAA
ATTTTGTTGTGATCTTGCGAAAACTTGGGTGAAAACTGCCACAAAACTGT
GACAAATTGTTCATTGATAGTCCAGGATGACTCTGTAGCCATAAAAACCT
TTCTGGTTCATATTTTCATTCATATAGACTTGAATTGACAATGAGCTGAC
TTGACCTAAGGTGGTTATGAGTAGTGGGTGTCAGATGAGAATGTTTGTCT
TGAGAAGTTATGTCCAGTTCGTTATAATTCACATTTCCATCTTTGTTACA
TCATGTTGTGCTTGGATTTATATCTGCTACAAACCATTATGTCAGCTACT
AAAAGCACACATCCAGCCCAATGCNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCCCAATGCGCAAAACAAAATGGTGGCAACTTGAGAGTTTTACGCAGAA
ATCAAACATAACCACATACAACCAAAGTACAGCAATTTTCTAGCTTCTGT
AGAGTCTACTCTTGATTTAAATAAATCATTTCCATCAAAAGGAGTTTTTT
TTCTGTTGCTAGGGGGATTTTTTAAGCACCAAGCAGGAAAAAAATGCTCA
CCGCAGCCTGAATGATAAAGATATCACTCTGAAATTTTCAGGGGATGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTGGTTCAAAAGGGTCATTTTGTCAATAAATGT
CAAAGACATGTCAAAGGATTTTCAGCAAGTACCCAGTGAAACATAGGGCT
CTACTTACATGTTTTTTTTTATAAGCATAACGCTTATAAGCATATGAAGT
CTCAGATTTGCAGATTTCCTAAGCATAACTTAAGCATATACGCTAGCCTG
AAATATTTTTCAAGTAGTCAATCTCTTTCTATTCAAAAAGGTTTGCAAGT
GGTGAAGTAAAAAAAGACATTTCACGGCTAGCCACATTCCACTGCTCAAA
AATTTAAATGCTTTTTGAATCGAATATTAACAAAATTTTAACAAAGATTT
TATTTAAAAATTTGGTTGGGTGAATCAAAAGCATAATAATTCTTAAGCAT
ATAAAAAGCATATTCTATGTCTGGATGCTTTGAAAGCCTAAGCATACTCG
AGCCTGACCAAGGGGCATACACTTGCTTATAAAAAAAAACATGTACTTAA
AGTATTTTAACTTTTTAGATTGATCGATTCTTATAAATAAAACTGACATG
AATAAGTAAGTGTGCGAAGAAGTGCGTCTGTAAACTTTATAGAAAAAGCG
CGAGAAAAAGCCATAAACAAAATAAAAGAGAGAAAATATTTTGAAGTCTT
CAAAGTACGATAAAAGAAGAAGTTTTAACTTTTTTGCCACCAAAGTTTCA
GATTTTGCTAATTTTAACATGCTGAATATTTTAAAGGTAATTTCGAGCCG
TTTTGAGCTATTTTACAGTAGGTAGTAAGTAGTAGGTAGTAAGTATTAAG
TAGTAGGTAGTAGGCGTTTTGTACTTGCCGGTATTATTACACTTTTTTTG
GATTAGTAAAAGATTTTATTTTAAAATTTTGTGAGTTTCACAGCTAAGTA
GCTGTACGTAAGTGTCGTATATTAAGAGTTCATCATTGTGTTTGTTAATC
AAGAAACTTTTCTTGATGACAAACTGTATTTTCTGGGAATTAACAAGTAA
TCTTTGGTAACATCTGATCAGCTTTTTATTAAATTCGGATTGTGTTGCCA
TGGTGCTTGTGTCACAGTATGTGACATTGAAAACCAAAATCAATAATCAA
TGGATGATTGATGACAAATCGATAACAATTAATGAAAAATCANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGATCCAAAAGATTCATATGTCTAAAAAACGAGGGGGTTTGGAT
ACAAGATTATGGGCGATGACGCGCTTCTCGAACTATGCTGAACTTAGTTA
CCTTTTTTTGCTCACAATATAATATATTTTTATATTTCACATTATTGCTA
ATTTTACCATTTATATATATACATTTTAAGATAGACAGCAATGTGACAGA
CGTTTTTGCGAGTTACCTATATCTTGTCATTTTCTCTAAAATGAAATTGT
CTCTCGGGATTGACATGTTGTGACGCGCTCCTTCTTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGACATCAATAATAAGGTT
TTAAATGTGTCAAGCAGAAAGTAACACTTTGGCATTGCACTTAACACTTC
TTTGGAAATGAAACCTTTTTGTTCTATTTAGGTGATGAAAAGAGTAAGTC
ATTCTTTTCATAAAGTAGTGATCTTTAGGTTTGTACATGTAATGAATACC
TTTACTTTCAATCGAAGTTGTTGAAAAGATATGAGGCACTGTTTGCAAAA
TATACTATTTAAGATGTACATACAGTAATATATCTTTATCTGATATCTCT
TTTTATTTCAGCTATAAAGAATCGACCTGTACATGAATTCAAAGCTCCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024435	XLOC_024435	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00040260-exon-sc0002368-1575043694:8806..8905	TCONS_00040260-exon-sc0002368-1575043694:8806..8905	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1575043694:8459..8681	TCONS_00040260-exon-sc0002368-1575043694:8459..8681	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1575043694:3356..3394	TCONS_00040260-exon-sc0002368-1575043694:3356..3394	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1510915933:8806..8905	TCONS_00040260-exon-sc0002368-1510915933:8806..8905	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1510915933:8459..8681	TCONS_00040260-exon-sc0002368-1510915933:8459..8681	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1510915933:3356..3394	TCONS_00040260-exon-sc0002368-1510915933:3356..3394	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1491911889:8806..8905	TCONS_00040260-exon-sc0002368-1491911889:8806..8905	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1491911889:8459..8681	TCONS_00040260-exon-sc0002368-1491911889:8459..8681	Clytia hemisphaerica	exon
TCONS_00040260-exon-sc0002368-1491911889:3356..3394	TCONS_00040260-exon-sc0002368-1491911889:3356..3394	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002368	supercontig	sc0002368:3356..8905 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.31275	4.96669	2.55437	1.06428	25.2336	22.5402	9.61843	7.81812	7.02677	9.8777	9.16776	10.3743	6.58241	5.20898	12.8555	10.0169	14.2305	8.09001	8.02161	15.7778	18.2681	17.9461	9.08406	15.6356	3.90123	5.69132	16.7586	6.25472	13.8507	9.41528

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00040260 vs. Swiss-Prot (Human)

BLAST of TCONS_00040260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00040260 (transcript) - C. hemisphaerica