TCONS_00040252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040252
Unique NameTCONS_00040252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040252 ID=TCONS_00040252|Name=TCONS_00040252|organism=Clytia hemisphaerica|type=transcript|length=1228bp
TTGTCTTGATGTCTCGATCATTCATCTTCCCAATGCAATGGAATGGAATG
CAATGTAATGCGTTTTGCAACTGTCGACCAAACATTAAGTCAGCCGGTGC
TTCTTTCGTAATGCTGTGTGGTGTAGCACGGTATTGACGTAAAAGTTTGT
AAGTTTCAGTTTCTAAATCCTTCCCTTCAACGTAGGCAGCACGTATTGCT
TTCATCAAAGGTTTGTTAAAGTTTTCAACCTGTCCATTGGCTTGCGGCAA
TAATGGTGTAATACGGTGATGAGTGATACCGTTGTCTTCCATGAATTCTC
GTACCTCTTTCGAAGGAAATGGTGGGCCATTGTCGGTAACAACTTTTGAC
GGATTTCCATAAGTAGCAAATGTTCTATGTAAAACGTCTGTCAAAGATTT
AGCCGTTGTACTTTTGACGAATGCTATTTCTGGGTAACGTGAACGTTTAT
CAATTATAACGAGAACGTGCTTGTTTAACACTGGAAATGGGCCCAAATAA
TCGATATGTAACGTATCCCAAACAGCTTCTGGAATTTAGGTAACTTTAAT
CGGAGCAGGTGGTTTTGATGGACCAGTACATTCAACCATTTTGTCCATAC
CGTAGAAAAATACTTTTGTTCGTAAGAGCTGTTTCGTTTTCTCGATACCT
TGATGTCCAACATGACAAATACGGACAGCATCTTTGTGAAATTTTGTGGG
CAGTACGATTCGGTTACCTTTAAGAATGACACCATGGGTAAGACTGACAG
TAAGCTCGTCTTTCATTTTACGAAACTGTTTAAGTACGTCTATATCAACA
TTTCGTAAATGTTCGGGGGCATGTTCGTGTTTCTGTGGTTCATTCAACTT
GTACCAATCGTTGGCTTGAATTATATTCATTAGTAATCGTAATTCAGTTT
CGTTTTCGGTTTCAGTAGCAATATCCTCTATCTTGAAAGATTTCAGTGTA
GCAAATTTTGTGACCATGTTTACACAAGTTTCTATGTAGCTACGGTTGAT
CGACCGGATGTCGACTCGAGTAATCAGATCTAATATAATAATATTATAAT
AATCTAAGgtcatttattttcaatcacTTGCTATATATTTGGACTCACTC
TTCCTGTGTTTTCTAGCCCACCAGCGATTCTAGCGTTCCCCTTTTGATAT
ATTTAATTTATGTtaagatttattttattttatctaaaacATTGTTCTAT
CATTTTATATTCCTAAATGAGACCGAAC
Run BLAST on NCBI

transcript from alignment at sc0002366:17176..18542+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040252 ID=TCONS_00040252|Name=TCONS_00040252|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at sc0002366:17176..18542+ (Clytia hemisphaerica)
TTGTCTTGATGTCTCGATCATTCATCTTCCCAATGCAATGGAATGGAATG
CAATGTAATGCGTTTTGCAACTGTCGACCAAACATTAAGTCAGCCGGTGC
TTCTTTCGTAATGCTGTGTGGTGTAGCACGGTATTGACGTAAAAGTTTGT
AAGTTTCAGTTTCTAAATCCTTCCCTTCAACGTAGGCAGCACGTATTGCT
TTCATCAAAGGTTTGTTAAAGTTTTCAACCTGTCCATTGGCTTGCGGCAA
TAATGGTGTAATACGGTGATGAGTGATACCGTTGTCTTCCATGAATTCTC
GTACCTCTTTCGAAGGAAATGGTGGGCCATTGTCGGTAACAACTTTTGAC
GGATTTCCATAAGTAGCAAATGTTCTATGTAAAACGTCTGTCAAAGATTT
AGCCGTTGTACTTTTGACGAATGCTATTTCTGGGTAACGTGAACGTTTAT
CAATTATAACGAGAACATACTTGTTTAACACTGGAATTGGGCCCAAATAA
TCGATATGTAGCGTATCCCAAACAGCTTCTGGAATTTCGGTAGCTTTAAT
CAGAGCAGGTGGTTTTGATGGANCAACATGAACGTTTATCAATTATAACG
AGAACGTGCTTGTTTAACACTGGAAATGGGCCCAAATAATCGATATGTAA
CGTATCCCAAACAGCTTCTGGAATTTAGGTAACTTTAATCGGAGCAGGTG
GTTTTGATGGACCAGTACATTCAACCATTTTGTCCATACCGTAGAAAAAT
ACTTTTGTTCGTAAGAGCTGTTTCGTTTTCTCGATACCTTGATGTCCAAC
ATGACAAATACGGACAGCATCTTTGTGAAATTTTGTGGGCAGTACGATTC
GGTTACCTTTAAGAATGACACCATGGGTAAGACTGACAGTAAGCTCGTCT
TTCATTTTACGAAACTGTTTAAGTACGTCTATATCAACATTTCGTAAATG
TTCGGGGGCATGTTCGTGTTTCTGTGGTTCATTCAACTTGTACCAATCGT
TGGCTTGAATTATATTCATTAGTAATCGTAATTCAGTTTCGTTTTCGGTT
TCAGTAGCAATATCCTCTATCTTGAAAGATTTCAGTGTAGCAAATTTTGT
GACCATGTTTACACAAGTTTCTATGTAGCTACGGTTGATCGACCGGATGT
CGACTCGAGTAATCAGATCTAATATAATAATATTATAATAATCTAAGgtc
atttattttcaatcacTTGCTATATATTTGGACTCACTCTTCCTGTGTTT
TCTAGCCCACCAGCGATTCTAGCGTTCCCCTTTTGATATATTTAATTTAT
GTtaagatttattttattttatctaaaacATTGTTCTATCATTTTATATT
CCTAAATGAGACCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024428XLOC_024428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040252-exon-sc0002366-1491911889:17176..17641TCONS_00040252-exon-sc0002366-1491911889:17176..17641Clytia hemisphaericaexon
TCONS_00040252-exon-sc0002366-1510915933:17176..17641TCONS_00040252-exon-sc0002366-1510915933:17176..17641Clytia hemisphaericaexon
TCONS_00040252-exon-sc0002366-1575043694:17176..17641TCONS_00040252-exon-sc0002366-1575043694:17176..17641Clytia hemisphaericaexon
TCONS_00040252-exon-sc0002366-1491911889:17781..18542TCONS_00040252-exon-sc0002366-1491911889:17781..18542Clytia hemisphaericaexon
TCONS_00040252-exon-sc0002366-1510915933:17781..18542TCONS_00040252-exon-sc0002366-1510915933:17781..18542Clytia hemisphaericaexon
TCONS_00040252-exon-sc0002366-1575043694:17781..18542TCONS_00040252-exon-sc0002366-1575043694:17781..18542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002366supercontigsc0002366:17176..18542 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139265	0.0689654	0.0411212	0.077134	0.645436	0.649678	0.134285	0.125716	0	0.0739723	0.282188	0.166047	0.138931	0.146765	0.145533	0.0669096	0.124364	0.171367	0.0374583	0.193644	0.222788	0.559431	0.0817676	0.0362927	0.261665	0.166807	0.210033	0.265738	0	0.0393714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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