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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040248 ID=TCONS_00040248|Name=TCONS_00040248|organism=Clytia hemisphaerica|type=transcript|length=832bp
GGACAATCCCAATAGGGCATGCAAGTTGCAAAAAAGCATTTACGGTTTAA
ACAATCTGCCCGATGCTGGAACGAAAAGATGGACGAATTCCTTAAAGAAT
CAGGATTCACTAGAAACGACGCTGACCCTTGTATCTACAACAAACAAATC
ACAGAAGGAGACAAATCCTTTACCCTTATCGTTGCTGTATATGTCGATGA
TCTACTTATCGCCTTTAACAACATCCAGATTCTTCGAGAACAGAAACAGA
AACTCGGGGAACGTTTCGAAATGGAGGACAAAGGTGAGGTACATTTCATC
CTTGGCATGCAATTCAAGAGAGATCGTAATAATCGCAGATTGACTATTGA
TCAAAATACATTTCTTTCATCTGTGCTTAATCGTTTTAATATGAATGAAT
GCAAACCAGTCGCCACACTTCTGGAACCAAGTATGAAGTTCGAAAAGTTG
CCCAACGATGAGGAGATTGTAAAGTTAAAGGATTACCGATCAGCGATCGG
ATGTTTGACCTATGCATCAATCGGTACCCGTCCAGACATATCTGCAGCAG
TGGGAGTTTTGAGCCAACATATGTCAAAACCTGGCAAACAACATTGGATT
GGCGTAAAGAGAGTTCTGCGTTATTTGAAAGGAACACTTGATTATGGCTT
GATCTACGAAGGATCTGAGTCAGGAGATATTCTGCTTCATTCTGCAGATG
CTGATTGGGCTGGAGATATTATTACACGAAAATCCACCTCTGGTTACGTA
TTCAAAGTCGGAAATTCTACAGTATCGTGGAAATCCAAGCGTCAATCGAT
CGTTGCACTCTCGACAACAGAAGCTGAATANN Run BLAST on NCBI protein sequence of TCONS_00040248-protein >TCONS_00040248-protein ID=TCONS_00040248-protein|Name=TCONS_00040248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MQVAKKHLRFKQSARCWNEKMDEFLKESGFTRNDADPCIYNKQITEGDKS
FTLIVAVYVDDLLIAFNNIQILREQKQKLGERFEMEDKGEVHFILGMQFK
RDRNNRRLTIDQNTFLSSVLNRFNMNECKPVATLLEPSMKFEKLPNDEEI
VKLKDYRSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVL
RYLKGTLDYGLIYEGSESGDILLHSADADWAGDIITRKSTSGYVFKVGNS
TVSWKSKRQSIVALSTTEAEX Run BLAST on NCBI transcript from alignment at sc0002364:23185..24016 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040248 ID=TCONS_00040248|Name=TCONS_00040248|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0002364:23185..24016 (Clytia hemisphaerica)
NNTATTCAGCTTCTGTTGTCGAGAGTGCAACGATCGATTGACGCTTGGAT
TTCCACGATACTGTAGAATTTCCGACTTTGAATACGTAACCAGAGGTGGA
TTTTCGTGTAATAATATCTCCAGCCCAATCAGCATCTGCAGAATGAAGCA
GAATATCTCCTGACTCAGATCCTTCGTAGATCAAGCCATAATCAAGTGTT
CCTTTCAAATAACGCAGAACTCTCTTTACGCCAATCCAATGTTGTTTGCC
AGGTTTTGACATATGTTGGCTCAAAACTCCCACTGCTGCAGATATGTCTG
GACGGGTACCGATTGATGCATAGGTCAAACATCCGATCGCTGATCGGTAA
TCCTTTAACTTTACAATCTCCTCATCGTTGGGCAACTTTTCGAACTTCAT
ACTTGGTTCCAGAAGTGTGGCGACTGGTTTGCATTCATTCATATTAAAAC
GATTAAGCACAGATGAAAGAAATGTATTTTGATCAATAGTCAATCTGCGA
TTATTACGATCTCTCTTGAATTGCATGCCAAGGATGAAATGTACCTCACC
TTTGTCCTCCATTTCGAAACGTTCCCCGAGTTTCTGTTTCTGTTCTCGAA
GAATCTGGATGTTGTTAAAGGCGATAAGTAGATCATCGACATATACAGCA
ACGATAAGGGTAAAGGATTTGTCTCCTTCTGTGATTTGTTTGTTGTAGAT
ACAAGGGTCAGCGTCGTTTCTAGTGAATCCTGATTCTTTAAGGAATTCGT
CCATCTTTTCGTTCCAGCATCGGGCAGATTGTTTAAACCGTAAATGCTTT
TTTGCAACTTGCATGCCCTATTGGGATTGTCC Coding sequence (CDS) from alignment at sc0002364:23185..24016 >TCONS_00040248 ID=TCONS_00040248|Name=TCONS_00040248|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0002364:23185..24016 (Clytia hemisphaerica)
NTATTCAGCTTCTGTTGTCGAGAGTGCAACGATCGATTGACGCTTGGATT
TCCACGATACTGTAGAATTTCCGACTTTGAATACGTAACCAGAGGTGGAT
TTTCGTGTAATAATATCTCCAGCCCAATCAGCATCTGCAGAATGAAGCAG
AATATCTCCTGACTCAGATCCTTCGTAGATCAAGCCATAATCAAGTGTTC
CTTTCAAATAACGCAGAACTCTCTTTACGCCAATCCAATGTTGTTTGCCA
GGTTTTGACATATGTTGGCTCAAAACTCCCACTGCTGCAGATATGTCTGG
ACGGGTACCGATTGATGCATAGGTCAAACATCCGATCGCTGATCGGTAAT
CCTTTAACTTTACAATCTCCTCATCGTTGGGCAACTTTTCGAACTTCATA
CTTGGTTCCAGAAGTGTGGCGACTGGTTTGCATTCATTCATATTAAAACG
ATTAAGCACAGATGAAAGAAATGTATTTTGATCAATAGTCAATCTGCGAT
TATTACGATCTCTCTTGAATTGCATGCCAAGGATGAAATGTACCTCACCT
TTGTCCTCCATTTCGAAACGTTCCCCGAGTTTCTGTTTCTGTTCTCGAAG
AATCTGGATGTTGTTAAAGGCGATAAGTAGATCATCGACATATACAGCAA
CGATAAGGGTAAAGGATTTGTCTCCTTCTGTGATTTGTTTGTTGTAGATA
CAAGGGTCAGCGTCGTTTCTAGTGAATCCTGATTCTTTAAGGAATTCGTC
CATCTTTTCGTTCCAGCATCGGGCAGATTGTTTAAACCGTAAATGCTTTT
TTGCAACTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040248-exon-sc0002364-1491911889:23185..24016 | TCONS_00040248-exon-sc0002364-1491911889:23185..24016 | Clytia hemisphaerica | exon |
| TCONS_00040248-exon-sc0002364-1510915933:23185..24016 | TCONS_00040248-exon-sc0002364-1510915933:23185..24016 | Clytia hemisphaerica | exon |
| TCONS_00040248-exon-sc0002364-1575043694:23185..24016 | TCONS_00040248-exon-sc0002364-1575043694:23185..24016 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002364 | supercontig | sc0002364:23185..24016 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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