TCONS_00040247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040247
Unique NameTCONS_00040247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040247 ID=TCONS_00040247|Name=TCONS_00040247|organism=Clytia hemisphaerica|type=transcript|length=365bp
CTCGAACCAAACACATTGACATTAAGTTTCATCACGTGCGCGATGCTGTC
GCAAAGAAAGTAATTGACTTGGAGTATTGCCCTACTGATGAAATGATTGC
TGACCTTTTAACAAAAGGACTCCCAAGACCTCAATTTGAAAAACTTAGAG
AGGGACTTAATGTTAAAAAGGTTTAATGAATTTAATGAcggatttgaaat
ttatttagattttattttgtaTACGTAAAACGTCAAGTGGGAGTGTtgaa
aatatgacgttttactTACTTATCTGTATGTCTTAACCTTTTCTGCTAAT
TGCTTTGTTTATTAGTTTAAAGCTGATGTCATTTCCATTAGGGGTTTTAC
ATCGGCTGCCCTTTT
Run BLAST on NCBI

transcript from alignment at sc0002364:22560..22924

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040247 ID=TCONS_00040247|Name=TCONS_00040247|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at sc0002364:22560..22924 (Clytia hemisphaerica)
AAAAGGGCAGCCGATGTAAAACCCCTAATGGAAATGACATCAGCTTTAAA
CTAATAAACAAAGCAATTAGCAGAAAAGGTTAAGACATACAGATAAGTAa
gtaaaacgtcatattttcaACACTCCCACTTGACGTTTTACGTAtacaaa
ataaaatctaaataaatttcaaatccgTCATTAAATTCATTAAACCTTTT
TAACATTAAGTCCCTCTCTAAGTTTTTCAAATTGAGGTCTTGGGAGTCCT
TTTGTTAAAAGGTCAGCAATCATTTCATCAGTAGGGCAATACTCCAAGTC
AATTACTTTCTTTGCGACAGCATCGCGCACGTGATGAAACTTAATGTCAA
TGTGTTTGGTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024423XLOC_024423Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040247-exon-sc0002364-1491911889:22560..22924TCONS_00040247-exon-sc0002364-1491911889:22560..22924Clytia hemisphaericaexon
TCONS_00040247-exon-sc0002364-1510915933:22560..22924TCONS_00040247-exon-sc0002364-1510915933:22560..22924Clytia hemisphaericaexon
TCONS_00040247-exon-sc0002364-1575043694:22560..22924TCONS_00040247-exon-sc0002364-1575043694:22560..22924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002364supercontigsc0002364:22560..22924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.82672	1.0848	0.571938	0.755765	4.16443	3.35146	0.292386	0	1.16049	3.86592	0.758169	1.05213	0.370288	0	0	0.138584	0	0.856934	0	0.698421	0.510208	1.70188	0.464284	0.762835	0	0	3.38419	1.41369	0.424646	0.371042
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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