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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040241 ID=TCONS_00040241|Name=TCONS_00040241|organism=Clytia hemisphaerica|type=transcript|length=1636bp
CAGGGTTCCATCCACGTCATTTCACTACACAAACAAGACACAGctgAGGA
ATACAAAAGGTTACTGGAAATCACATAATGGAAACCTCAATGGAATATCT
CGCATGGAAGAAAAGTAGAACTCGAACTACAGCTCTCGCATGTATTCTGA
TTCTCGTCTATGGAATTGAAAGCCAATCACTGGAAGTGACTTTACTCTAC
TACTTCTCGGAGAACTTTGGGTTATCTTTACTTCAAGCAacattttatta
cagtgtaaaTGAGACTTTATTTGCTATTAGTAATCTTATAAGCGGAATGC
TTTTTGGAAGATACATTGATCAAACGCGAAATTTACGATTTGTGTTTTTG
CTCAATTTGGGTGTCATATGTATTGGGAACTTAATGTATTCTATCCCTTG
GCATATTTGGTTGGTATTGACTGGAAGATTTCTATGCGGCATCAATGAAT
CCTTGCAAACTGCAGTATGTGGAGAATTCAGAAGATGCTATAATGACAAA
GAATTGGTCAAAGTTCTTAGTTGGTATGAATTTCTTTATTCTGTTGGAAT
GAATGTTGGTCCTGGTCTTCCTATCTTATTCTCCTACGTCAATATCCATA
TCGGTAGCTGGAAAATCAATAAATACAACGCAATCCAATTTTTAACCGCT
GCAATAACATTAGTCATCTTTGTAATATCTTGGTTTTTGGTTATCGATCT
TTCTAAAGATCTGGAAAAACTTGGTGAAGATGCTGTTGCGATAGCACGTG
GTCGAAAGCAGGAGGATGATCCCGAACGGGTACCTCTTGTTGAGACATGT
GTTCGAAAGCAGGAGGAGGACCAAGATCGGGTACCACTTGTTGATGCACG
TGTTCGAGAGCAGAAGGAAGACCCCGATCGGGAACCTCTTGTTGAGGAAC
GTGAAAGAGAGCAAGATGAGGACCCCGAACGGGAACCTCTTGTTGACAGA
TATGATAACTCATCCAGCAACACAGATGGAGAAGCTTCTCAAGAAAGGAG
GTTACTAGGCTGGAGAGAACTCTTTAAATTAGATATTTTATCACTATGTC
TAAGTTATGGAGTCTTAAGATATTCAGTAACGACTGCAGTTGCTATGGTT
ACTTTGTATTCCGTTAATACTTTTCATTGGCAGATGAACACTTTGTCTTG
GCTTCATGTTATTGTTGGATTTGTAACCTATATCTTTCTGATGGTGCTAG
TTTATCGAAAGGTTTTTGAAGGACCCTTGGCAATATTTTATGGATATGTC
ATGGCGTGTTCACTGGCTGGATGTCTTTTGTCTCTCCTGGTTCTTCCAAA
GTTAATAGTGATACCAACAATGGCTGGACAGATAGCTTTTGGTGTAATTA
TTATGGCAACTAAGTGCTTTGTTTATTTTCAAGCTCAATCAGCAGGCAAA
GTGCTCTTGTTCAACACTGTCTCAGATTCAAATGCAAATCTAATCGATGG
ATTTAGATCAGTTTTTGGAAATGCATTTCGTATCCTCGCAAAATCaactt
tctattattttttcttatatcCTGAATATTTTTCACCTCCTTTTATAATC
TGCAGTATATTATTTGTGTGTATGCTAATTCATAGAAGGAATTTACATTT
GTCAcactaaaattaaatttagaagaGCAGACCGGG Run BLAST on NCBI transcript from alignment at sc0002359:23549..29636- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040241 ID=TCONS_00040241|Name=TCONS_00040241|organism=Clytia hemisphaerica|type=transcript|length=6088bp|location=Sequence derived from alignment at sc0002359:23549..29636- (Clytia hemisphaerica)
CAGGGTTCCATCCACGTCATTTCACTACACAAACAAGACACAGGTATGAT
CATTTTTTTTTGAAAGAAAGAATATGTATTGATTGTGGATTAGCTTGTAC
AGGTTCTCAGTTTCTTCAAGATTAGAGAGGTTGGTTTTCGCTTTACTCTT
TTTAGGTTTCTTCAAGGAGGGAAACGAGAAAACTTTATTACTCCAAAAGT
CATTTCATTTATTTGTCTATTTTGACTTATACATCAGGCATCATTACTTT
ATCTTATCTTTTTATAATCGTGCAAAGGCGAGATTTTCGACTGTGAGTTG
TCGGAATAGCTTTCTATCAGCTTTTTCAGGAAAAAAAAAGAGAATTATCT
TTTGACTCACAAAGAATTGCAAAATGCAAAATGGATTTTTTAAATTCTTG
TAAAATAAACCAAGTTGCAAAGAAAGGTATGATTTTGGCGGCAAAACTTG
AGCTATGGGAAAAATAGAATTTTCAAAAATCTAGATCATGATATAACAAA
TAAATATTACATGCATTCTCATCGAATGTATGGAAGCCGAGAAAGGTCAG
TGCGTGGAAATTTTAAAATTCTGTCGCGACCTTTTTCAATGCATTATGCA
ATCTTTTTCAATTTGTCGTGATCTTTTTCAATTTGTCGCGATCTTTTTCA
TTTTGTTGCCATCTTTTTCAATTTGTCGCGGTCTTTTTCAATTTGTCGCA
GTCTTTTTCAATTTGTCGCGATCTTTTTCATTTTGTTGCCATCTTTTTCA
ATTTGTCGTGGTCTTTTTCAATTTGCCACGATCTTTTTCATTTTGTTGCC
ATCTTTTTCAATTTGTCGTGGTCTTTTTCAATTTGTCGCGGTCTTTTTCA
ATCTGTCGCGATCTTTTTTCAATTTGTCGCGATCTTTTTCATTTTGTTGC
CATCTTTTTCAATTTGTCGTGGTCTTTTTCAATTTGTCGCGGTCTTTTTC
AATCTGTCGCGATCTTTTTTCAATTTGTCGCGGTCTTTTTCAATTTATCG
TGATCTTTTTCAATTTGTCGCGATCTTTTTCATTTTGTTGCCATCATTTT
CAATTTGTCGTGTCTTTTTCAAACTGTCACAATATTTCTTAAGCTGTCGA
GATATTTTTCAAGCTCTTACGTTTCCAGAAACTGTCGCGATGTTTTCAAG
CTGTCGCATTTCCAGAAGCTGTTGCGTTTTCATGTGTATTCGTGTCAGGG
AATCCCCTTTGCCGTTTAACCTCATTGTATCAAGTGTCACGTCCCTTTCC
CCGCTACTTCGACGATGTTTTGTATATTTGTGGTCAAGATGTTGGAGGAA
TTTTCTGTGGTAACTGTGGTGTAAAAAAAAAACAAAAAAATTAAACGCGA
CAGCTTGGAAAATATCGCGATACAGCCTCTGGAAATGCAACATTTCTTCG
AAGCTCTCCCGCCGATTTTTTTTCGTATATCGCAATAACGCCATACCACC
ATATTTTCCAGCATTTACTACCATTGTAACGGACGATAATATCTTCTTCG
CAACAACTTGAAAAATATTGCTACACCTTCTGGGAACGCAATAGTCTGAA
TATTATCACGACAGTCTGAAAATTATCACGACAACTTGAAAATATTGCGA
CAGTTTAAAAAAGATCGCAACAGTTTGAAAATGATCGAGATAGGTTTTAA
AATCTCTCGCGTCCCTTCTCGGCTTCCATACAAATGGCTACCTTATCAGC
CCTTTTTACGCCGGCCCTAATTTAACGCCGGCCCCTTTTACGCCAGCCCT
TATTACAAAACGAGCCCAAAAATAACACTAATAACGGCCGGCATAAAAAG
GGCCGATAAGGTATTTGAAGGCGAGACTTTATTGAAAGCGGTAAGAGAAA
AACCCTTTCATGTTTCATCCTAGTATTTCATCTCATCAATTATTATTTCA
TGTTTCTTTAGCGTAGTTTAAGATAAAATTGAGATATTTTAGGCGTCATA
CTTCATTTTAACTACAATACCCGTTAATTTACTTAAATCTTAGAATTTAC
TTATTTCAAGCTCCGGGTTGTAAAGGTTTTTTAAAAGAACATTCAACAAT
TTTTGTTTTAAACATTTTCTTACCTTTTTGTGAGTATTTTTTGCCCATTT
TCAAAAGAAATCGGGTCTTTTAGAGTCTACACAATGTTTTCAACTTGTTA
TTAATAATTTTGCCATTGAATTCTCATGTTCTGGTTTCAGTTTGTTTTTA
AGGATATTCTTATATCACAGGCTCTAAACTTTAACATTCCATTTTTTTAA
GATAATAGAAAAATTTATTCCAGCGATAAAAGAGATTCAAAAGTATACAC
GCAGTTGAAATTCTGCACTTTAGAAAATGCTGAAAAATGTTGAAAAATGC
TTTTAGAATATATTGCAAATTCATAAAAAAATTGGAATATAATGTTTTTG
TGAATTACGAGTCATTTTCAAGCTCTATCAATCCTTTTAGATAATGGGGG
GGGGGGGGGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGGGGGCGATAAGTAATTCAAAGAAATAAAGTTA
TGACGGAATAAATTCGGAATTTTTATTCCACATTTAAAATACACGCGGCA
ACGAAGCTCACTTCAAAGACACAAAAGAAGATAGACGTCCAGTCGTTTAT
ATGTTCATGGGTACATTAAACACAGTGACCTTTTAGTACCAAATAACACA
TCGTTTATTCAAACATTTAGTTACTAAAGTTTTTTCACGTTTACTCTACT
TTGTTGTTGTCTAGAGATAAAATCGTTCTAAATAAGTCTAAAGTGTCAAA
GGTTGAAACTACTACTATACTATATATTGTTATAAAAGCGTCTCTAAACT
ATATAATTTCAACAGATCCAAAATCTAGATATGAATAACTGTTTGTTCAT
TAACTTTAGATTGCTATCGCCACATATTTTTGCAATCGTGTATTTTGAAT
AGTTTAGAAATTTTGAGAGCGCATTTTTGGTTTGTATGTAATGTAATGAA
TTTCAGATATTATTTCAAATAATATTATCAAACCTTATAAAACCATACAT
ATTAAGAAGATTTTAAAAATCATATTTTTTATTTTAGCTGAGGAATACAA
AAGGTTACTGGAAATCACATAATGGAAACCTCAATGGAATATCTCGCATG
GAAGAAAAGTAGAACTCGAACTACAGCTCTCGCATGTATTCTGATTCTCG
TCTATGGAATTGAAAGCCAATCACTGGAAGTGACTTTACTCTACTACTTC
TCGGAGAACTTTGGGTTATCTTTACTTCAAGCAACATTTTATTACAGTGT
AAATGAGACTTTATTTGCTATTAGTAATCTTATAAGCGGAATGCTTTTTG
GAAGATACATTGATCAAACGCGAAATTTACGATTTGTGTTTTTGCTCAAT
TTGGGTGTCATATGTATTGGGAACTTAATGTATTCTATCCCTTGGCATAT
TTGGTTGGTATTGACTGGAAGATTTCTATGCGGCATCAATGAATCCTTGC
AAACTGCAGTATGTGGTAAGGTCTTTTTTCTACGTATAAACTAGCACTGG
TCTAACCTGGGGGTAAGTTATATCCGCCATATTTGATCAATTTTCTAGAA
AAAAAATGGTATCCCGATCATTGAATAGAGCCCGAAGGAGTAAAGTAGAA
TTTTCAACCACTCCCAGTCAAGAAAAAGTGAATCCAGTTAGTTCCCATTC
CTAGCGGTTCCTTTGTTTTCGAGGACTGTATTTTTTTAAATCTAACGGGT
AACAATAGATTTTACTTTCAATCCGACGTTTGTGTAAAAACAACGCACGG
GCGTTTTGGGTGGGAAAAATATGAGACTTAATTTTCCAATTCCCAAAAAA
CTTTCTCTAGGGGTTTTAAAAATTTTTAAACCACGCCCCAAGTATAACAA
AGTACTTCTGGCTCCTCCACCGAAAAAGCGTTATCAAAATTTCACGTGGA
TATTAGTGAGTGGAACAATTTGAAATAAAAAAATATTTAAAAAAATTCTA
AAAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGTAGAAAAG
TGCTATAACTTTCATCTTCACTGGAGAGATTCTTTAATCTTAGGAGGTCA
TCACTGTGAAAAAAATTCATTAAAGTATTTATTCAATATAAAGTTATGAT
ATAAAGTTGATAAGTGATTGACCCCAAAAAACAGCAGAAAACATTTTTGA
AACATTTTTGAAATATTTTTTCACAGTGATAACGTTCGATGATCAAGGAT
TTACTTCAGTGAAAATGATAGTTATAGCACTTTTCTACTAGATCTTCATT
TTTTTCTTTTTCATTTTGATCTTCATTTTTAGAATTTTTTTAAATATTTT
TTTATTTCAAATTGTTCCACTCACTAATATCTTTCCGATGATACCAAATT
TATAAAGATTTAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAG
TGCACACTTATCGTGAATAAACTTTAATATCGCAAGTCAGCAATCTTACG
CATTTTCGCAAGAATTAATTTCGTAAAAGTTAATCCAATTAAAGTAAAGA
AGTTCGAGTTAAAGAAACTCTCCTGTATTTACCACAGCGATGATAAAAAC
TTCTATCGTAACCATATAGGGTTAAAAATTCTTGTTGTTCAAAGCTAAAA
AATCCAGTGTGGAAGGTGTGGAGTGCAATTTTTTCAATCGAATTAAAAAA
AATGGGCAATTTTCCCACCGGGGACGAAATTTGACTCAATTTTTCCAGCT
GGGTTGGGTTTCTAACGTGTCTGTAACACACAGGTTTCAAAATCATTGAA
TGTTGATTTTCTGTATCATATGTTCAATAACTATCACCTCAACAATATCT
ATATCATATTTTTTCAATTCTAGGAGAATTCAGAAGATGCTATAATGACA
AAGAATTGGTCAAAGTTCTTAGTTGGTATGAATTTCTTTATTCTGTTGGA
ATGAATGTTGGTCCTGGTCTTCCTATCTTATTCTCCTACGTCAATATCCA
TATCGGTAGCTGGAAAATCAATAAATACAACGCAATCCAATTTTTAACCG
CTGCAATAACATTAGTCATCTTTGTAATATCTTGGTTTTTGGTTATCGAT
CTTTCTAAAGATCTGGAAAAACTTGGTGAAGATGCTGTTGCGATAGCACG
TGGTCGAAAGCAGGAGGATGATCCCGAACGGGTACCTCTTGTTGAGACAT
GTGTTCGAAAGCAGGAGGAGGACCAAGATCGGGTACCACTTGTTGATGCA
CGTGTTCGAGAGCAGAAGGAAGACCCCGATCGGGAACCTCTTGTTGAGGA
ACGTGAAAGAGAGCAAGATGAGGACCCCGAACGGGAACCTCTTGTTGACA
GATATGATAACTCATCCAGCAACACAGATGGAGAAGCTTCTCAAGAAAGG
AGGTTACTAGGCTGGAGAGAACTCTTTAAATTAGATATTTTATCACTATG
TCTAAGTTATGGAGTCTTAAGATATTCAGTAACGACTGCAGTTGCTATGG
TTACTTTGTATTCCGTTAATACTTTTCATTGGCAGATGAACACTTTGTCT
TGGCTTCATGTTATTGTTGGATTTGTAACCTATATCTTTCTGATGGTGCT
AGTTTATCGAAAGGTTTTTGAAGGACCCTTGGCAATATTTTATGGATATG
TCATGGCGTGTTCACTGGCTGGATGTCTTTTGTCTCTCCTGGTTCTTCCA
AAGTTAATAGTGATACCAACAATGGCTGGACAGATAGCTTTTGGTGTAAT
TATTATGGCAACTAAGTGCTTTGTTTATTTTCAAGCTCAATCAGCAGGCA
AAGTGCTCTTGTTCAACACTGTCTCAGATTCAAATGCAAATCTAATCGAT
GGATTTAGATCAGTTTTTGGAAATGCATTTCGTATCCTCGCAAAATCAAC
TTTCTATTATTTTTTCTTATATCCTGAATATTTTTCACCTCCTTTTATAA
TCTGCAGTATATTATTTGTGTGTATGCTAATTCATAGAAGGAATTTACAT
TTGTCACACTAAAATTAAATTTAGAAGAGCAGACCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040241-exon-sc0002359-1575043694:29594..29636 | TCONS_00040241-exon-sc0002359-1575043694:29594..29636 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1575043694:26072..26499 | TCONS_00040241-exon-sc0002359-1575043694:26072..26499 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1575043694:23549..24713 | TCONS_00040241-exon-sc0002359-1575043694:23549..24713 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1510915933:29594..29636 | TCONS_00040241-exon-sc0002359-1510915933:29594..29636 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1510915933:26072..26499 | TCONS_00040241-exon-sc0002359-1510915933:26072..26499 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1510915933:23549..24713 | TCONS_00040241-exon-sc0002359-1510915933:23549..24713 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1491911889:29594..29636 | TCONS_00040241-exon-sc0002359-1491911889:29594..29636 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1491911889:26072..26499 | TCONS_00040241-exon-sc0002359-1491911889:26072..26499 | Clytia hemisphaerica | exon |
| TCONS_00040241-exon-sc0002359-1491911889:23549..24713 | TCONS_00040241-exon-sc0002359-1491911889:23549..24713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002359 | supercontig | sc0002359:23549..29636 - |
Blast
The following BLAST results are available for this feature:
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