TCONS_00040239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040239
Unique NameTCONS_00040239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040239 ID=TCONS_00040239|Name=TCONS_00040239|organism=Clytia hemisphaerica|type=transcript|length=2173bp
ATTCAATCACATATCATAAGGCGTGAGTGTGGTATGAAGAAATCAGAATG
TTTTCAAGAAATCAGTGAACAAATTGAATCTGTTTTTCTACAttctacaa
attttgaacatttggaattatttttacacATCGCTTCACATATTTAGCAG
tttgaacacatTTTGTCATACTTTCAATATCAATCAATCATTTGTCAGTT
TGTTACGAACACCTGTGTCCGATAATTCCACATTCAAACATACGTCGTCC
CTGGCTTCCATACAAATGGCTATTTGAAGACGACGCTTTATTGAAAGCGc
tgAGGAATACAAAAGGTTACTGGAAATCATATAATGGAAACCTCATTGGA
ATATCTCGAATGGAAGAAAAATAGAACTCGAACTACAGCTCTCGCATGTA
TTCTGATTCTCCTCTACGGAATTGAAAGCCAAGCACTGGAAGTGACTGTA
CTCTACTACTTCTCGGAGAACTTTGGGTTATCTTTACTTCAAGCAacatt
ttattacagtgtaatGGAGACTTTATTCGCTGTTAGTAATCTTATAAGCG
GAATACTTTTTGGACGATACATTGATTGTACGCGAAATTTAAGAGTTGTG
TTTTTGCTCAATTTGGGTGTCATATGTATTGGGAACTTAATGTATTCAAT
CCCTTGGCATATTTGGTCGGTAATGACTGGACGATTTCTATGCGGCATCA
ATGAATCCTTGCAAACTGCAGTATGTGGTGAATCCAGAAGATGTTATAAT
GACAAAGAATTGGTCAAATTTCTTAGTTGGTATGAATTTTTATATTCTGT
TGGAATAAATATTGGTCCTGGTCTTCCTATCTTATTCTCATACGTCAACT
TTCAAATCGGTAattggaaaataaataaatacaacGCAATCCCATTCTTA
ATCGCTGCAATAACAATGATCATCTTTATAATTTCTTGGTTTTTGGTTAT
CGATCTTTCTAAAGATCTGGAAAAACTTGGTGAACATGCTGTTGCAATAG
CACGTGGTCGAAAGCAGGAGGAGGATCCCAAACGGGTACCTCTTGTCGAG
ACATGCATTCGAAAGCAGGAGGAGAACCAAGAACGGGAACCACTTGTCGA
GGCACGTGTTCGAAAGCAGGAGGAGGATCCCAAACGGGTACCTCTTGTCG
AGACATGCATTCGAAAGCAGGAGGAGAACCAAGAACGGGAACCACTTGTC
GAGGCACGTGTTCGAAAGCAGGAGGAGGATCCCGAACACGAACCACTTGA
CGAGGCAAGTGGTCGAGAGCAGAAGGAAGACCCCGAACGGGAACCTCTTG
TTGAAACACGTGATCGAGAGCAGGAGGAGGACTCCGAACGGGAACCTCTT
GTTGACAGAGATTATAACTCATCCAGCAACACAGATGGAGAAGTTTCTCA
AGAAAGGAGGTTACTAGGCTGGAGAGAACTCTTTAAATTGGATATTTTAT
CACTATGTCTAAGTTATGGAGTCTTAAGATATTCAGTAACGACTGCAATT
GCTATGGTTACTTTGTATTCCGTCAATACTTTTCATTGGCAAATGAACAC
TTTGTCCTGGCTTCATGTTTTTGTTGGATTTTCAACCTATATCTTTCTGA
TGGTGCTAGTTTATCGAAAGGTTTTTGCAGGACCCTTGGCAATATTTTAT
GGATATGTCATGAGCTGTTCACTGGCTGGATGTCTTTTGTCTCTCCTGGT
TCTTCCAAAGTTAATAGTGATACCAACAATAGCTGGACAGATAGCGTTTG
GTGTAACTATTGTGGCAATTAagtgttttgtttattttcaagcTCAATCA
GCAGGCAAAGTGCTCTTGTTCAACACTGTCTCAGATTCAAATGCAAATCT
TATCGATGGATTTAGATCAGTTTTTGGAAATGCATTTCGTATCTTCGGAA
AATTGTCTCTCTATTATTTTTTCTTGTACGCTGAATATTTTTCACCACCT
TTTATAGTCTGCAGTATTGTATTTGTGTGTACGCTAATCCATAGAAGGAA
TATACATTTGTCAcactaaatttaaatttagaagAGCAGACTGagtaaaa
aagtataaattcaaTTTCCTATTATTCCaagctttgttttattttttaat
tttacggTAACATTTCTATCAGGTCAGTGATATTTTACTACCTATAAAAG
AAATTGCGGTACGAGCTATTTTA
Run BLAST on NCBI

protein sequence of TCONS_00040239-protein

>TCONS_00040239-protein ID=TCONS_00040239-protein|Name=TCONS_00040239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp
METSLEYLEWKKNRTRTTALACILILLYGIESQALEVTVLYYFSENFGLS
LLQATFYYSVMETLFAVSNLISGILFGRYIDCTRNLRVVFLLNLGVICIG
NLMYSIPWHIWSVMTGRFLCGINESLQTAVCGESRRCYNDKELVKFLSWY
EFLYSVGINIGPGLPILFSYVNFQIGNWKINKYNAIPFLIAAITMIIFII
SWFLVIDLSKDLEKLGEHAVAIARGRKQEEDPKRVPLVETCIRKQEENQE
REPLVEARVRKQEEDPKRVPLVETCIRKQEENQEREPLVEARVRKQEEDP
EHEPLDEASGREQKEDPEREPLVETRDREQEEDSEREPLVDRDYNSSSNT
DGEVSQERRLLGWRELFKLDILSLCLSYGVLRYSVTTAIAMVTLYSVNTF
HWQMNTLSWLHVFVGFSTYIFLMVLVYRKVFAGPLAIFYGYVMSCSLAGC
LLSLLVLPKLIVIPTIAGQIAFGVTIVAIKCFVYFQAQSAGKVLLFNTVS
DSNANLIDGFRSVFGNAFRIFGKLSLYYFFLYAEYFSPPFIVCSIVFVCT
LIHRRNIHLSH
Run BLAST on NCBI

transcript from alignment at sc0002359:11077..18686-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040239 ID=TCONS_00040239|Name=TCONS_00040239|organism=Clytia hemisphaerica|type=transcript|length=7610bp|location=Sequence derived from alignment at sc0002359:11077..18686- (Clytia hemisphaerica)
ATTCAATCACATATCATAAGGCGTGAGTGTGGTATGAAGAAATCAGAATG
TTTTCAAGAAATCAGTGAACAAATTGAATCTGTTTTTCTACATTCTACAA
ATTTTGAACATTTGGAATTATTTTTACACATCGCTTCACATATTTAGCAG
GTTGGTGAGCTAATTTTTTCTATACTGTATTTTTTATATCAAGGCTTTGT
CAACTCAATTTTTCTGAAGTACATTTCAATCAAATTTGTAATCTATCAAC
TTAGATCAATTTGTATCAATTTTATTTTTCAGTTTGAACACATTTTGTCA
TACTTTCAATATCAATCAATCATTTGTCAGTTTGTTACGAACACCTGTGT
CCGATAATTCCACATTCAAACATACGTCGTCCCTGGCTTCCATACAAATG
GCTATTTGAAGACGACGCTTTATTGAAAGCGGTAAGAGAAAAATCCTTTC
ATGTTTCATCCTATTATTTCATCTCATTGATTATCATTTGATGTTTCTTT
AGCTTACTTTAAGATAAATTTAGGTATTTCAGGCGTCATACTCCATTTTA
ACTACAGTACCTGTAAATTTAATTAAATAATAGAATTTACTTGTTTAAAG
CTCTGAGCTATGCCACATTTTATGAGAACATTCAATTTTTTTAAGCCTTA
GGATGTCCTTAACTTTTTGAGTTTCAAGCCTAGAAATGTTCTTAACATTC
TCTTATATTTTCACTATTTTGTGAGCATTTTTGCCCATTTTCCAAAGAAA
TCGGGTTTTTTAGAGTCCACAAAGCCTTATAATGTTCTTATAATCCTTAT
AATGCCATCTATAGCAGTTTATTCTAAAAAGTGTATCAAATTGTTCTAGC
TGTTGTTATTTTTGAACGCCCCTACCGTAAATCCTCGAATAAGCGCCCCG
CTCCAATAGGCACCCCCTTTTAGTTAAAATAATATTATAAGCGCCCCGCT
CGAATAAGCGCCCCCTTTGAATAAGCGCCCCCTCGAATATTGTTATTGAT
TGAATAAGATATTGAGTAGATACTTGTGACTTAAAAAGAAAGAAAGCGAT
TAAGAATAAAATGATAGAAATTGTCAATTGGATTTTTCCAATTTTTCTTT
TATTCATCCTTTTTTGAAAAATCAACCCTTTGAAACAGTTAAGTTTAAGC
AAATTCCGAATTTGTTGATATACAAATTTCTGAAATAAAAAAATAAGCGC
CCCGCTTGAATAAGCGCCCCCTTTAGAGCCTGAAAATTAAATAAGCGCCC
GGGCGCTTATTCGATGATTTACGGTATGCCCCTGCAGGTTTTGAGCATCC
ATTATGGACCTTTTTTGGAAGATTTTTTCACTGGGGTGGCCAGTAGGGTG
TATTCCACTGGGTCTCAGAGAAAGGGTGTTAATTAAGACAATAAATTGCG
ATAAAAAATGACAAGAAAATGAAAGTACTCTTATTGAAATAATGGCTCTA
CTCTAGTCTCGCACATTCTATCTAAAGCTCTAAATAGACACGACTGCATT
GTCTGCATTAATATCAGAGGTTGAGTTTTCAAAGAACATATCAATCTCTG
AGGAACCCCAAGTAAAGAATTTTTATCGCACATGTATCAATCTAATCACT
ATGTAGAAGGAATCAAAGATGACGAGCAAATATTACCATATTTTAATATG
GTCAGCTTGAGCTTAAAGCCAGCTGGCCATCCCATCAGAAAAAGGTTCAA
TTAAACCACCTCAAACTAACAAGGCAAGAAATATACAAATGAAATACATA
CGGACCAAGGCCAATATCTGTTACCAGAATTAGAACTAACGACATTCCAT
TCACAGCTATAAAAGCTGCGGAATCAAACAACGAAGACAGAGATCGAAAA
AGACATGATAGGAGTATGACCTTAGATATTTCATAGAACTAAATGCTGTT
AAAATATTATTATAAGTTGAATTAAGAATATAAGTTGATCGATGGTACGA
AACCATAAACCATTTAGTTTATTGATCTCTCCGCTGAGCATTCTCCCCTC
GTTTAGCTCAGTCTACATATCAAAGTCGCCGTTCTAGATGCTTAAGTTCC
CTAATATCTAGCAGACTGTATCAATGTACATGTTTACTATTGGCGGATTC
CCCAGAAAACTCCAAGTGTAATTGAAGAAATGAGTTTCTTTCAAAAGAAA
TCTTCTACACGATTCCCAAATGTATGTATAACAGTAATTACTAAACTATT
AATTATGGAAATGTCACTTTATTGAATCGAAATAATAGACTGGATTGGTC
AGCACAGGTCGATGTATCATTTCGGCCAGTGCTTTTCACGGTACATTAAA
CGCAGTAACCTTTTAGTAACAAATAATACCTCATTTATTTAAAAAATTCA
GTTACTAAAGTTTTTTCACGTTTACTCTAATTTGCTGTTGTCTAGAGATA
AAATTGTTCTAAATAAGTGTAAAAGTGCGTCAAAGGTTAAAACTACTACT
ATACTATATACAGTGTGTTCCGCAAAAAAGTCTACTCAAAAAGTAAAGCG
TAGCTCTGAGAAAACTATCTTTATAATGAGTTTAATTTTTATACCAGCTA
AAAGCATAACCAGCTTTTTGTGGTCAAAAATTCAATACAAGAGAATTTTC
AATTCAAGAGATATCAAGTCATAAGTAAGCAAAGGTGTAGATTTTAAACA
TCGGAGATCAAGTAAATTTTTTCATAATTACTTCACTAAAAAGTAACGTT
AATTTCAAATTGGAAGAAAGATAAAAAAAATCTAAATTTTTAATGCAAAA
GAAAGAAAAATCATTCGTCTTTCCACTGCTGAAAGAATTCCTATGGAAAA
GCCTTTTGTTAATGAGATAATTAATTTCCAAGCTGCATAGGTCAATCTTT
TAAAATGCAAAGTTTCATCAAATTGACAAAAAACTGACCTGTCAATCAAA
AATTAATTAACTCTTTGGTAATAAAAATTATGCATCTCAACTTTTTTTAA
ACTTCAACAGGGTGTAGTAAAAGCGTCATATCTCACTAAAGAAGAATTGT
TCGAAATGAAATTTGGACAGTAGAAAACTGAATAGCTGTGCTTTCAGTAG
TTTTAAAAATCATTCAAAAACGATCATCATTCATTTCAAAAGTTGACTTT
AATTATTTGAGTATATACTTTTTTTGCGGAACACACTGTAGTGCTATAAA
AGGGTCTCTAAACTTTATAATTTCACCAGCTCAAAAACCTAGAGATGAAT
AACAGTTTGTTCATTAAATCCAATTTTTTTAATTTTGGATTGCTATAATT
GTCGCATATTTTTGCATTTGTGTATTTTGAATAGTTTAGCATTTTGAGAA
AACATTATTGGTATGTAATGTAATGAATTTCAGATATTTTCTTAAAAAAC
ATTAGCAAGCCATATATCACCCCCTTCTCACAGACCAGTTAGGATTTTTC
TTCCAGTGGGGATAAAGATAACGGAATGAAACTCAATGGGGATTGAATTC
CTATATTTTCATGGCTAGGGATTTTAATTTTTTTGCTTTCAAGTCAGAAA
ACTCAGTGCAGATGGGAAAAATAGCATAATATTTTATTTGGTTATTTTCA
TTGAGGACAAAAATTGGGGTATCATTTTCCACCTGGGACGATATTTTGGC
AAATTTTTTAAGTGGGAAAGGATCCCAGTGGATCTGTGAGAAGAGGGTCT
TTTATAAAACCATACATAATAAGAAGATTTTAAAAATCATATTTTTGATT
TTAGCTGAGGAATACAAAAGGTTACTGGAAATCATATAATGGAAACCTCA
TTGGAATATCTCGAATGGAAGAAAAATAGAACTCGAACTACAGCTCTCGC
ATGTATTCTGATTCTCCTCTACGGAATTGAAAGCCAAGCACTGGAAGTGA
CTGTACTCTACTACTTCTCGGAGAACTTTGGGTTATCTTTACTTCAAGCA
ACATTTTATTACAGTGTAATGGAGACTTTATTCGCTGTTAGTAATCTTAT
AAGCGGAATACTTTTTGGACGATACATTGATTGTACGCGAAATTTAAGAG
TTGTGTTTTTGCTCAATTTGGGTGTCATATGTATTGGGAACTTAATGTAT
TCAATCCCTTGGCATATTTGGTCGGTAATGACTGGACGATTTCTATGCGG
CATCAATGAATCCTTGCAAACTGCAGTATGTGGTAAGATCTTTTTTATAC
TCTATTTCAATGTAAAAGCTAGCACTGACCTGCCTTAGGGGAACTAAGTT
ATATCCACCATCTTTAATCAATTTTTTAGAAAAAAATTGTATCCCGATCA
TTGAGTTTAAAGCCCAAAAGGCTAAAGGAGAATCTTTAACCTCTCCCAAT
CAAGAAAAAGTGAATCCACTTATTTCTCATCCAGAACGCACCTAGAACGC
GCCGCTAAATCAGGTATTCGGCCGTTAAATCAGGTATTCGGCCGTTGATT
CAGGTCTTCCGCCGTTGGTTTAGGTCTTCAGCCGTTAATTCAGGTCTTCC
GCCGTTGGTTCAGGTCTTCCGCCGTTGGTTTAGGTCTTCAGCCGTTAATT
CAGGTCTTCAGTCGCTTAATCAGGTCTGCGTCCACTGATGGAAAAAAAAT
TGCCCCGCCGCAATCATGACAACGGATTGTGTCTGTAGCAGTTCCTTCGT
TTTTGAGGACTGCAATTTTTGAAATCTAACAATAGATTTTACTTTCAATC
CGACGTTTGTGTAAAACCACGTTCTGGATTACTTCCTAAAACTTTTCTCT
AGGGTTTTTAAAAATTTCAGTGAAACCACGTCCCAAGTATAATTGACCGA
CACTCAAATTAAAATTGAGTTTTTCCGAGTTATTGTAAAAGAACTAAAGA
TATCATTATCAATTTGGGATTTAAAATAATTCTCATAATTCTATCGTTTT
CAGCATGATAGATCTCATTGTATTCCCATCCTAAATGGTTTGGTGTCAAG
GGCCATTCCAACAAAATTTTTATCCCGTCTAGCTATGGGTGCTATCAAAT
GGTTCATTGGTCGCGGAACCCCTAGGTCCCTACTGGTGGTATCCAGCCAA
AAATGTGCGTGACGTAACGTTCCTTCCTCTGGAATTGCCGTTTAGTGTAT
TAATAAAGCAAAAATATAAGCATCAGTTGATCTCAAAGTAGGCGCCGTAC
CATAAGAAACTAATATCACCCATGTCTCAGTTCTGAAATAAAATAGTTTT
ATATCAAAGGAAAGTACTGTATATGACTTTGTGGGCCTTATCAAATGATT
CAAAACCACACCCTTGCCTTAGAATCTTATATCACGGGGGATCAGGGTCA
GATTTAGGAACTTGGTTCCCAAGTACCAGATTGTTGATAAGGTTATTATA
ATCAAGCGAAAAATTACGAAAAAGGACACAACAACTCGGTTTTTCGTAGC
TCAAAAAAATAACTCAAAAAAATAACTCGACCTCAATTTCTGCAGACCGG
ATAACTTTCCCCGACGGCCGATTTTCCGCCGGCCAGATAACAATTCCGCC
GGCCGGACGACTATTCAGCCGGCCAAGGAACTATTTCGACGGCCGGATTT
CCGGTGAAATCTGCCCCCCCCCTATAGCCTTTTTTGGCCAAACTACGGTG
GATGTTTTTAACTCTGGGAACACATATTTGTTCAAGATAAGGAATAATTT
CGAGTTATAAAGATAGGGTTATAAGACGTTTCTAACTAAATGGCTCGTCT
GTAAACGTAAACGTCGTAAATTTCGAGACATTCGACTTCAGTCGGATTAA
ATTTTGAATGAACCTGAAAAAAGCTGAAAATAGACATACTTCGCAACCAA
TAGGGAGTTTTGGCAGATTCCTCCACCGAAATAAGCGTTTTCAATATTTC
ACGTAGATTAAGTTTTACGAGTTTAATTTCGCGCAAGTTAATCCGATTAA
AATATAGTTGAATTTACCACAGCGAGGATAAAAATTTGTATCGAAACCCT
AAGGGGTTAGAAATTCTTGTTGTTCAAAGCTAAAAAATCCAGTGTGGAAG
GTGTGGAGTGCAGTTTTTCCATCGAATTTTGAAACAGGGAAATTTTCCCA
CCGGGGACGAAAGCTTGACCCAATTTTTCCAGTTGGGTTGGGTTTCTAAC
GTGTCTGTGACACACAGATTTAAAAACCATTTAATGTTGATATTCTCATG
TGTTCATCATATGTTCAATAACTATCATCTCAACAATATCTATATAATAT
TTTTTCAATTCTAGGTGAATCCAGAAGATGTTATAATGACAAAGAATTGG
TCAAATTTCTTAGTTGGTATGAATTTTTATATTCTGTTGGAATAAATATT
GGTCCTGGTCTTCCTATCTTATTCTCATACGTCAACTTTCAAATCGGTAA
TTGGAAAATAAATAAATACAACGCAATCCCATTCTTAATCGCTGCAATAA
CAATGATCATCTTTATAATTTCTTGGTTTTTGGTTATCGATCTTTCTAAA
GATCTGGAAAAACTTGGTGAACATGCTGTTGCAATAGCACGTGGTCGAAA
GCAGGAGGAGGATCCCAAACGGGTACCTCTTGTCGAGACATGCATTCGAA
AGCAGGAGGAGAACCAAGAACGGGAACCACTTGTCGAGGCACGTGTTCGA
AAGCAGGAGGAGGATCCCAAACGGGTACCTCTTGTCGAGACATGCATTCG
AAAGCAGGAGGAGAACCAAGAACGGGAACCACTTGTCGAGGCACGTGTTC
GAAAGCAGGAGGAGGATCCCGAACACGAACCACTTGACGAGGCAAGTGGT
CGAGAGCAGAAGGAAGACCCCGAACGGGAACCTCTTGTTGAAACACGTGA
TCGAGAGCAGGAGGAGGACTCCGAACGGGAACCTCTTGTTGACAGAGATT
ATAACTCATCCAGCAACACAGATGGAGAAGTTTCTCAAGAAAGGAGGTTA
CTAGGCTGGAGAGAACTCTTTAAATTGGATATTTTATCACTATGTCTAAG
TTATGGAGTCTTAAGATATTCAGTAACGACTGCAATTGCTATGGTTACTT
TGTATTCCGTCAATACTTTTCATTGGCAAATGAACACTTTGTCCTGGCTT
CATGTTTTTGTTGGATTTTCAACCTATATCTTTCTGATGGTGCTAGTTTA
TCGAAAGGTTTTTGCAGGACCCTTGGCAATATTTTATGGATATGTCATGA
GCTGTTCACTGGCTGGATGTCTTTTGTCTCTCCTGGTTCTTCCAAAGTTA
ATAGTGATACCAACAATAGCTGGACAGATAGCGTTTGGTGTAACTATTGT
GGCAATTAAGTGTTTTGTTTATTTTCAAGCTCAATCAGCAGGCAAAGTGC
TCTTGTTCAACACTGTCTCAGATTCAAATGCAAATCTTATCGATGGATTT
AGATCAGTTTTTGGAAATGCATTTCGTATCTTCGGAAAATTGTCTCTCTA
TTATTTTTTCTTGTACGCTGAATATTTTTCACCACCTTTTATAGTCTGCA
GTATTGTATTTGTGTGTACGCTAATCCATAGAAGGAATATACATTTGTCA
CACTAAATTTAAATTTAGAAGAGCAGACTGAGTAAAAAAGTATAAATTCA
ATTTCCTATTATTCCAAGCTTTGTTTTATTTTTTAATTTTACGGTAACAT
TTCTATCAGGTCAGTGATATTTTACTACCTATAAAAGAAATTGCGGTACG
AGCTATTTTA

Coding sequence (CDS) from alignment at sc0002359:11077..18686-

>TCONS_00040239 ID=TCONS_00040239|Name=TCONS_00040239|organism=Clytia hemisphaerica|type=CDS|length=3372bp|location=Sequence derived from alignment at sc0002359:11077..18686- (Clytia hemisphaerica)
GTGAATCCAGAAGATGTTATAATGACAAAGAATTGGTCAAATTTCTTAGT
TGGTATGAATTTTTATATTCTGTTGGAATAAATATTGGTCCTGGTCTTCC
TATCTTATTCTCATACGTCAACTTTCAAATCGGTAATTGGAAAATAAATA
AATACAACGCAATCCCATTCTTAATCGCTGCAATAACAATGATCATCTTT
ATAATTTCTTGGTTTTTGGTTATCGATCTTTCTAAAGATCTGGAAAAACT
TGGTGAACATGCTGTTGCAATAGCACGTGGTCGAAAGCAGGAGGAGGATC
CCAAACGGGTACCTCTTGTCGAGACATGCATTCGAAAGCAGGAGGAGAAC
CAAGAACGGGAACCACTTGTCGAGGCACGTGTTCGAAAGCAGGAGGAGGA
TCCCAAACGGGTACCTCTTGTCGAGACATGCATTCGAAAGCAGGAGGAGA
ACCAAGAACGGGAACCACTTGTCGAGGCACGTGTTCGAAAGCAGGAGGAG
GATCCCGAACACGAACCACTTGACGAGGCAAGTGGTCGAGAGCAGAAGGA
AGACCCCGAACGGGAACCTCTTGTTGAAACACGTGATCGAGAGCAGGAGG
AGGACTCCGAACGGGAACCTCTTGTTGACAGAGATTATAACTCATCCAGC
AACACAGATGGAGAAGTTTCTCAAGAAAGGAGGTTACTAGGCTGGAGAGA
ACTCTTTAAATTGGATATTTTATCACTATGTCTAAGTTATGGAGTCTTAA
GATATTCAGTAACGACTGCAATTGCTATGGTTACTTTGTATTCCGTCAAT
ACTTTTCATTGGCAAATGAACACTTTGTCCTGGCTTCATGTTTTTGTTGG
ATTTTCAACCTATATCTTTCTGATGGTGCTAGTTTATCGAAAGGTTTTTG
CAGGACCCTTGGCAATATTTTATGGATATGTCATGAGCTGTTCACTGGCT
GGATGTCTTTTGTCTCTCCTGGTTCTTCCAAAGTTAATAGTGATACCAAC
AATAGCTGGACAGATAGCGTTTGGTGTAACTATTGTGGCAATTAAGTGTT
TTGTTTATTTTCAAGCTCAATCAGCAGGCAAAGTGCTCTTGTTCAACACT
GTCTCAGATTCAAATGCAAATCTTATCGATGGATTTAGATCAGTTTTTGG
AAATGCATTTCGTATCTTCGGAAAATTGTCTCTCTATTATTTTTTCTTGT
ACGCTGAATATTTTTCACCACCTTTTATAGTCTGCAGTATTGTATTTGTG
TGTACGCTAATCCATAGAAGGAATATACATTTGTCACACTAAATGGAAAC
CTCATTGGAATATCTCGAATGGAAGAAAAATAGAACTCGAACTACAGCTC
TCGCATGTATTCTGATTCTCCTCTACGGAATTGAAAGCCAAGCACTGGAA
GTGACTGTACTCTACTACTTCTCGGAGAACTTTGGGTTATCTTTACTTCA
AGCAACATTTTATTACAGTGTAATGGAGACTTTATTCGCTGTTAGTAATC
TTATAAGCGGAATACTTTTTGGACGATACATTGATTGTACGCGAAATTTA
AGAGTTGTGTTTTTGCTCAATTTGGGTGTCATATGTATTGGGAACTTAAT
GTATTCAATCCCTTGGCATATTTGGTCGGTAATGACTGGACGATTTCTAT
GCGGCATCAATGAATCCTTGCAAACTGCAGTATGTGGTGAATCCAGAAGA
TGTTATAATGACAAAGAATTGGTCAAATTTCTTAGTTGGTATGAATTTTT
ATATTCTGTTGGAATAAATATTGGTCCTGGTCTTCCTATCTTATTCTCAT
ACGTCAACTTTCAAATCGGTAATTGGAAAATAAATAAATACAACGCAATC
CCATTCTTAATCGCTGCAATAACAATGATCATCTTTATAATTTCTTGGTT
TTTGGTTATCGATCTTTCTAAAGATCTGGAAAAACTTGGTGAACATGCTG
TTGCAATAGCACGTGGTCGAAAGCAGGAGGAGGATCCCAAACGGGTACCT
CTTGTCGAGACATGCATTCGAAAGCAGGAGGAGAACCAAGAACGGGAACC
ACTTGTCGAGGCACGTGTTCGAAAGCAGGAGGAGGATCCCAAACGGGTAC
CTCTTGTCGAGACATGCATTCGAAAGCAGGAGGAGAACCAAGAACGGGAA
CCACTTGTCGAGGCACGTGTTCGAAAGCAGGAGGAGGATCCCGAACACGA
ACCACTTGACGAGGCAAGTGGTCGAGAGCAGAAGGAAGACCCCGAACGGG
AACCTCTTGTTGAAACACGTGATCGAGAGCAGGAGGAGGACTCCGAACGG
GAACCTCTTGTTGACAGAGATTATAACTCATCCAGCAACACAGATGGAGA
AGTTTCTCAAGAAAGGAGGTTACTAGGCTGGAGAGAACTCTTTAAATTGG
ATATTTTATCACTATGTCTAAGTTATGGAGTCTTAAGATATTCAGTAACG
ACTGCAATTGCTATGGTTACTTTGTATTCCGTCAATACTTTTCATTGGCA
AATGAACACTTTGTCCTGGCTTCATGTTTTTGTTGGATTTTCAACCTATA
TCTTTCTGATGGTGCTAGTTTATCGAAAGGTTTTTGCAGGACCCTTGGCA
ATATTTTATGGATATGTCATGAGCTGTTCACTGGCTGGATGTCTTTTGTC
TCTCCTGGTTCTTCCAAAGTTAATAGTGATACCAACAATAGCTGGACAGA
TAGCGTTTGGTGTAACTATTGTGGCAATTAAGTGTTTTGTTTATTTTCAA
GCTCAATCAGCAGGCAAAGTGCTCTTGTTCAACACTGTCTCAGATTCAAA
TGCAAATCTTATCGATGGATTTAGATCAGTTTTTGGAAATGCATTTCGTA
TCTTCGGAAAATTGTCTCTCTATTATTTTTTCTTGTACGCTGAATATTTT
TCACCACCTTTTATAGTCTGCAGTATTGTATTTGTGTGTACGCTAATCCA
TAGAAGGAATATACATTTGTCACACTAAATGGAAACCTCATTGGAATATC
TCGAATGGAAGAAAAATAGAACTCGAACTACAGCTCTCGCATGTATTCTG
ATTCTCCTCTACGGAATTGAAAGCCAAGCACTGGAAGTGACTGTACTCTA
CTACTTCTCGGAGAACTTTGGGTTATCTTTACTTCAAGCAACATTTTATT
ACAGTGTAATGGAGACTTTATTCGCTGTTAGTAATCTTATAAGCGGAATA
CTTTTTGGACGATACATTGATTGTACGCGAAATTTAAGAGTTGTGTTTTT
GCTCAATTTGGGTGTCATATGTATTGGGAACTTAATGTATTCAATCCCTT
GGCATATTTGGTCGGTAATGACTGGACGATTTCTATGCGGCATCAATGAA
TCCTTGCAAACTGCAGTATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024418XLOC_024418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040239-proteinTCONS_00040239-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040239-exon-sc0002359-1575043694:18537..18686TCONS_00040239-exon-sc0002359-1575043694:18537..18686Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1575043694:18256..18404TCONS_00040239-exon-sc0002359-1575043694:18256..18404Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1575043694:14555..14982TCONS_00040239-exon-sc0002359-1575043694:14555..14982Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1575043694:11077..12522TCONS_00040239-exon-sc0002359-1575043694:11077..12522Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1510915933:18537..18686TCONS_00040239-exon-sc0002359-1510915933:18537..18686Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1510915933:18256..18404TCONS_00040239-exon-sc0002359-1510915933:18256..18404Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1510915933:14555..14982TCONS_00040239-exon-sc0002359-1510915933:14555..14982Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1510915933:11077..12522TCONS_00040239-exon-sc0002359-1510915933:11077..12522Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1491911889:18537..18686TCONS_00040239-exon-sc0002359-1491911889:18537..18686Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1491911889:18256..18404TCONS_00040239-exon-sc0002359-1491911889:18256..18404Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1491911889:14555..14982TCONS_00040239-exon-sc0002359-1491911889:14555..14982Clytia hemisphaericaexon
TCONS_00040239-exon-sc0002359-1491911889:11077..12522TCONS_00040239-exon-sc0002359-1491911889:11077..12522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002359supercontigsc0002359:11077..18686 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216768	0.311504	0.184077	0	1.29497	0.787261	1.08619	1.27831	5.13389	7.04126	5.88465	10.3458	8.79926	11.9699	10.9255	6.90914	1.88138	1.58411	12.7889	11.5073	0.40718	0.318835	0.181421	0.305834	0.0703972	0.224186	0.0495387	0.0264345	0	0.0495868
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top