TCONS_00040223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040223
Unique NameTCONS_00040223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040223 ID=TCONS_00040223|Name=TCONS_00040223|organism=Clytia hemisphaerica|type=transcript|length=847bp
GTCGAATGtatagtttttaataaaaaacaaaaatgcttctGGTTATTTTG
TTTGTCAATGAGTATTAGATTATttaattcttttgaaatagatttgtAAA
ATACATCAGAATAAATCACAATGTGGAATTGGTTGGGAATAACAAATGAT
CCAAAAATACCCGAAGAAGGTGAAACAAAAGGTGAAAGTTCTGAATCCAC
CGAATCTCAAGAAAATTTGACAACTGAAAATGGAGATACAACTCAACCAC
AAGGAGCTGAAAAGAAGATGGTGGATGTAGCTGCAAACCTAAGCAGTTAT
CTTTATACATTTGCTGACAAAGCAACCAAAACAGCAACGAAATTAAAAGA
ATCGGTTGACCAAAGACTTGAACAGACTATTGTTGGAGATTTCAGTCGTG
AAAATGAGAAATTTATACATGAACGTGATCAAAGACGTGTTGGTGATGCT
GTACCACCATGGGTTGGTTTCCATGAAGAAGCTGTGATGAAAAGTCAAAT
TCTCGCCCTATCTGCTGATGAACGAAATTTTCTTCGTGACCCTCCATCAG
GAGTGGATTTTCAATTCAACCTTGAACACATGATGCCTGTTGCTCTTGCA
GTTCTCAAAGACGATGAAGAGTTGGAAAGAATGAGATTTACTGTCGTccc
aaaaagGATAAAAGAAGATCGTTTCTGGAGGAATTACTTTTACCGAGTGT
CACTAATCAAACAATCTACCCAGCTATCGTCGCTCAGTTTGAATAAAGGT
ATGtccaaatatttttgtgttaacATTTTGAGATATCAATTATAGTTATG
CTATTGATGGAAGAGGGAAGGACCTCTTATTTCCTTTGTAAATTAGA
Run BLAST on NCBI

protein sequence of TCONS_00040223-protein

>TCONS_00040223-protein ID=TCONS_00040223-protein|Name=TCONS_00040223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MWNWLGITNDPKIPEEGETKGESSESTESQENLTTENGDTTQPQGAEKKM
VDVAANLSSYLYTFADKATKTATKLKESVDQRLEQTIVGDFSRENEKFIH
ERDQRRVGDAVPPWVGFHEEAVMKSQILALSADERNFLRDPPSGVDFQFN
LEHMMPVALAVLKDDEELERMRFTVVPKRIKEDRFWRNYFYRVSLIKQST
QLSSLSLNKGMSKYFCVNILRYQL
Run BLAST on NCBI

transcript from alignment at sc0002354:7754..15458-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040223 ID=TCONS_00040223|Name=TCONS_00040223|organism=Clytia hemisphaerica|type=transcript|length=7705bp|location=Sequence derived from alignment at sc0002354:7754..15458- (Clytia hemisphaerica)
GTCGAATGTATAGTTTTTAATAAAAAACAAAAATGCTTCTGGTTATTTTG
TTTGTCAATGAGTATTAGATTATTTAATTCTTTTGAAATAGATTTGTAAA
ATACATCAGAATAAATCACAATGTGGAATTGGTTGGGAATAACAAATGAT
CCAAAAATACCCGAAGAAGGTGAAACAAAAGGTGAAAGTTCTGAATCCAC
CGAATCTCAAGAAAATTTGACAACTGAAAATGGAGATACAACTCAACCAC
AAGGAGCTGAAAAGAAGATGGTGGATGTAGCTGCAAACCTAAGCAGTATG
TTTCTTGTTTTGTTTGCTCTCATGATTATTGTGTTTGAAAAAAGGGGAGG
GTACAGTTCAGCAAGCTTTTGAAGTTAGAATATCTGAATTTCTGTCTGAC
ATTAAAAGTAAAATTTACTATTTACTACTAATGATGTTTTTATATTTAGA
TCAAAACAAATAATTTTCATTTCATTCTTCACAGGTTATCTTTATACATT
TGCTGACAAAGCAACCAAAACAGCAACGAAATTAAAAGAATCGGTTGACC
AAAGACTTGAACAGGTACTGGCTACTTTTCTAAAGGTTTTGATTATACAA
ATGTTGGTTAGTTTACTAACTCGTCTAATCTAAATCAAGCTCTTTTAATT
TTAACTGTATAAAAGGAATTTGGTTCAACTTCAAATTAGAAAACACAAGC
TAAGCAACTCTGGCTGCTATCTCCTTTAATGTGATCTCAATTTTTTCTTC
CACTTTTTCCCACTTTTTCTATATTCTTGAGTTAAAAAAAACATTTTATC
ATCTTCCTTTAGACTATTGTTGGAGATTTCAGTCGTGAAAATGAGAAATT
TATACATGAACGTGATCAAAGACGTGTTGGTGAGTTCTACTTCTCTTGAA
TAGTTCAAAACTTATGTGTGGTGAGTTTCAAAGGCTTCAATAAACACGAA
CGACTTTGCAAAAAGCTTTGTAATTTTTATTGCAACAAGAAATATTGCAC
AAATGCTTTTCTTGCTGAACAGTCAGTACAAAGAGTTTATTAAGGCATAT
TATATTTGATTTATGTCATTTAAACGCAAAAGAATAGCTCAAGAAAATCA
AGATTGAAGATTATTTGTCATGGTAGAAATTGCAATTATGGTATTAACTT
TTTCTTCGAATTCTTTCCTAGGTGATGCTGTACCACCATGGGTTGGTTTC
CATGAAGAAGCTGTGATGAAAAGTCAAATTCTCGCCCTATCTGCTGTATG
TAAATTCATCTTATTCGATTTAGACATTTTTAAGAATCCTTTCTTAGATT
GAAAATGTTCACGAGGCTTTGCTTTGTTTGCATTCCTTCAATGCCTTCTG
AACTTTTTAAATATGATAAGCGTTCCATGCCGCGCTAAACATATTTTCAA
AGATTTTAATTAGAAACTTTCTCAAGAGAGTTAGAATTTATCCATAGGGA
CATTTTTTAAAACAGTAGTGTAGAAACTGACTTCTACGAAAATCTTCCTA
ATTTTTTTAATATTCTTCTTTTAAATTCTAGTCATATGAGTCTGAATTAA
AAAAAAAATTGTCGAACATTTACATACTTAGGTTTGGGTTTAAACTTTTC
ATGAAATATCATGAATCTAAGCAGTACCAAATTTGGTTGGTTCGAAAGTA
GATATGATATATAGCGTCAGACCCCCTCACCCTCCTCCATGGAAAGTAGG
GGGTTACAACCTAAAATATTCCAAAAAATGGAGGGGGCTTGAAGTACACC
ACTTATTTGGGGGGAGCTAAGATCACATTACTGAGTGTGGGGTCTTAATG
GTTGGCTTTAATTACTCAATTTAAAGCTCATGGAGATAAAAAGTTTCCCC
TGCGGCGCAGCAAATTTTTTTTCCGTAGACGGGCGGAAATATCTTTAATG
GTCGGAAATATCATAGCGTAATGGTCGGAAATATCATTTGATGGTCGGTA
ATATCTTTTGATGGTCGGAAATATCAAAAACTCTGAAAATTTGAAAATTT
AATGGTCGGAAATATCATTTGATGGTCGGAAATATTATTTGATGGTCGGA
AATATCTTTTGATGGTTGAAAATATCATTTGATGGTCGGAAATATCCTAA
GCTCTAAAAATTTGAAAATTTAATGGTCGAAAATATCCCGCGCTTTTAAA
AATTCTTCATCAGCAAAAAAATGTAAACAAAGATGGTAGCAAAGGTGTTG
TTGAGATTTCGCTGATTGCTCAGAGCGCAACGAGCAATTTTTTTCCCCGA
TAATTTTCCTATCCGTCATTCCGTGATTCAGGGGGTATTGGGTCATTGGT
GTTGTGTGTGCCAGAGTAGTTTTTCATTTTAAGTTTTTGGGACACTATCT
GAGAACTGTTCTGTTTCTTAGTTCTTTATACAGTATTTTACACAAGACAT
AGACAGCTTTTTAGGGAGAGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCTT
ATATTGTGACTCTCGAGCTCCAACCCTAACCCTAACTGATAATAACCGAA
CCCCCGTCTACGTCCGCGGATTGAAAAATTTCACTTGCATCCTGGAGCAT
GATATCGTTTGCCAACCGTCTGCCACACACAACAAGTTGGCCACACAACA
CCACCTTTGCTACCATCTTTGTTTACATTTTTTTGCTGATGAAGCATTTT
TAAAAGCGCAGGATATTTCCGACCATTAAATTTTCAAATTTTTAGAACTT
TGGATATTTCCGACCATCAAAAGATATTTCCGACCATCAAATGATATTTC
CGACCATCAAATGATATTTCCGACCATTAAATTTTCAATTTTTCAGAGTT
TTGGATATTTCCGACCATCAAAAGATATTTCCGACCATCAAATGATATTT
CCGACCATTACGCTATGATATTTCCGACCATTAAAGATATTTCCGCCCGT
CTACGGAAAAAAAATTTGCTGCGGCGCAATATTTGAAATATATGTAATAT
ATATATGTAAAATCTTAAAATATTCTACATTTAGTGGGTAATTGCAACGC
AGAATACATTTTATTGACTTTTTTTTCCTGGAACACATTTTTGAAAGTGA
CGAGGGTCGAAAGTCCTGGGGGCTACCATAAAATTGTTGAATCTTTGGGG
GGGGGGACTTAAATCTTAGGGGGACCTAACTTTTTGCCTGAGACCTAAAC
CCTCGCTGACGCTATGGGGTTTTGAGATTTTTTGAGAGAGGCCTGTGAAT
CAGACCTGGCAAAAGTTTTACTTTCCAAAAAACTGAGTCAACTCCTAACC
CTAAAAAGAGGTAAAAACCTAATGTATTCTACAGGCCGGGATTCAAAAAT
ACCGGCAACATTTTGACGACAGTTGTCATTACTAAATCTGTTTTTGATTT
ATAAACTATACGAATTGAAAATACACACTTACAAGAAAATTTTGGACAGC
CAAAACCTTAGGAAAAGTCAGACATTGTGTTATAAGACACGTGCCTCTCC
AAACGTGATAATTGACCTCTCCAAGCTCCCTGGCTAGTGAGAGTTAGCTC
CCTACTATTAAAGATATTGTAGCACAGAGCTACAGAAGGCTCAAGAAATT
TCTTGGCCAAGTGCAATTTAGTTTTTTTGCGAAGCTCAGACAGACGTACT
CTCCGGATATTCTAAAGTTGATTTTTATTTTGTATCTTATCAGGATGAAC
GAAATTTTCTTCGTGACCCTCCATCAGGAGTGGATTTTCAATTCAACCTT
GAACACATGATGCCTGTTGCTCTTGCAGTTCTCAAAGACGATGAAGAGTT
GGAAAGAATGAGATTTACTGTCGTCCCAAAAAGGTCAAATTTCTCTCTTA
CAATGTGTATTGAATCAATCTAATATAAAAAGTGTAGTACAGTCAAATCT
CTTATTCAAAACGCTCTAATAGACGATATCGCGTTTAGATAAATGCAATA
CATTCTGGTTTCTCGGGGACTCTCAAAGGAATTATAATGTCGAGTATATA
ATGATCTGGAATATATTATAATTCCCTTGAGGGTCCCCGAGAAACCAGAA
TGCATTGCATTTATCTAAACGCGATATCGTCTATTGGAAGCCTACTATAA
TTCGAACTAAAACAATGGTTCCTACTTTTGCTAAAGTTAAAAAGTGTCCA
ACTTCCACTTTATTATACCGGGTGCGCCACAAAAATGTTTCTCTCTTTAA
AACTAGTTTTTTCGAAATCTAAAATTTTTTAAAGAACCATTCCTATCCCA
TTGGATTGACCCATCAGTTTCAAAATTTATGTGTTGAAAAATGTTCTTAA
TCATGTAAAGCCTATTGCGAGTGCTAGTTTTAAAATAAAATTTTGATAGG
TCGATTTTTAACGTTTCGGGCACTTTCTGAAAGCAACTTTTTTATTCAAT
TGAGCATAAATTTTGATTTAATGAACCCAATTTATTAAATGACCCATCAT
AATTTAAGTTTATCTTTCTTCTTTCCATTGGAATAGGAATGATTCTTTTA
AAATTTTTCGATTTCGAGAAAATCAGTTTCAAAGAGAAACTTTTTTGTGG
CGCACCCGGTATTACTTGATTATATCATCGAGCTAAAAATGGCTTTAATA
AGTATGGCGAATTCCAGGCATTTCAAATAATGTTGAAATCTTAATCATAA
GAGAAGAGTTTTTTTGGTCTACAATCAGTGCCATAAGATATTGGCACTTT
TGGCTAATTTATCATTTTTCGAAAATTGTAGTTCGAGCGAGAATGTTAAT
TTCGGGACTTCAACTTGATTTCAACGATTATTTCGATCTGTGAGGGATTT
ATTGGTTTCTAGGCTATATTTCAAGCCCTACTGGACCATTTTTGAACTTT
TGGATCCTTAGATCCTAAGGGTTCTTAAGTCTTAAGTTTAGCGATAAAAA
TCAGAGTTAAAACTCTACCCTTCGAACCTACTTTAGAGCACTTGCAAATC
GATTGTGGTTTCAAAACACCCCGGTGGATTTCCTTTTTGTGCCAAGTTTT
TCGTCACCGATTGTAGATATATCTTCGGGACTTTGACAGCCCTTATTCAT
GAACAATATTTAAACTAGTCATAGCTTTCACTAAATGCCCACGCAGAAGA
TCATGTCATGCACTTATAAAGCTTTTAATGCTTTAAAAATTAAAGCATTA
AAAATAATCAGGAATAATTGATTGATTTAATTATTGAATGATTGATTAAT
TGATTGATTGAGGCATATGCTTGAAAAGAAAAATTATATTCCATTAACAC
GATACTTGAAGGATTCATGCAGCTTAATAATTTGATAAAATTTAAAGAAA
ATAGCTTGCTTTTTTCATTGGCTGCTATATTTCAACAATTCTCTATTGCT
ACTTTGCCTAATAAACAATAGCCAAGAGAATACTACGTATAAAATTTATC
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTAAAGGAATGCCATTGTGGTCTATTCAGACTTACAGTCGAGAA
AAGTTGAAATGCGCTTTAATTTTTTTTCAAGTGCATAGTACTTTTTCATG
ATGCATCTTTTCTCCAAGCTGAAAGGATCGAAGTCATTAAGATGATCACA
GCGCAGACAATGAAGAGGCGTGCCTTCAGGAAGCTAGATTTTTTGAGTTT
ATAGCTATATACTTTCACTTTATTGTGTTTCCGTATGAATGTCTGTGTAT
CTAGTCTAACCACCGTTAAATGCCTTCGGGGAGGTCCCTCCTAGCTTGGA
AAGCTAGAATTGGAGCTATTTCACCAAACCACTGGAGCGTAAGTTATTTA
GAAAAAGTTGAATATGCGCAAGTAAAGTTAAACGAATGTTAACAAACTTT
TTTCAGGTTTTTGAAATAGATTTTACCACACTGAAAAAACAATCAATACA
CTCTAAGTGAGGTAAATCTCTTTTGAAGACCAAAAGAAAAAGTTTGTTTA
CATTGATTGACATTCAACATTCATTCAACCACTTTTGGATTCAACTTTAC
ATATGGCCATATGCATACATTCAACATTTTTGTACTTTGCCGGTATCTTG
TTTTACTAAGTTAAGAAGGACTTTCTCGAGTTACGACCATATACTGTCCC
GAAAAAAAACCCGAACATTTACGGAAGAGACTAACTACGGGGATGGTTGC
GCGACAAAACACAAACAACAAAAACAACAAAGTTTCGAGATTCCAGTCCA
TATCTATGCATGAAAACATGAGTGCCTCCTCGTCGCTGCGCTCCTGCAGG
GGCAATAACATAATTGATAGCTATATTTTTAAATTCTAATTTAAAGCTGT
CGTTTATTTTTCAGGATAAAAGAAGATCGTTTCTGGAGGAATTACTTTTA
CCGAGTGTCACTAATCAAACAATCTACCCAGCTATCGTCGCTCAGTTTGA
ATAAAGGTATGTCCAAATATTTTTGTGTTAACATTTTGAGATATCAATTA
TAGTTATGCTATTGATGGAAGAGGGAAGGACCTCTTATTTCCTTTGTAAA
TTAGA

Coding sequence (CDS) from alignment at sc0002354:7754..15458-

>TCONS_00040223 ID=TCONS_00040223|Name=TCONS_00040223|organism=Clytia hemisphaerica|type=CDS|length=4050bp|location=Sequence derived from alignment at sc0002354:7754..15458- (Clytia hemisphaerica)
GATAAAAGAAGATCGTTTCTGGAGGAATTACTTTTACCGAGTGTCACTAA
TCAAACAATCTACCCAGCTATCGTCGCTCAGTTTGAATAAAGGTATGTCC
AAATATTTTTGTGTTAACATTTTGAGATATCAATTATAGGATGAACGAAA
TTTTCTTCGTGACCCTCCATCAGGAGTGGATTTTCAATTCAACCTTGAAC
ACATGATGCCTGTTGCTCTTGCAGTTCTCAAAGACGATGAAGAGTTGGAA
AGAATGAGATTTACTGTCGTCCCAAAAAGGTGATGCTGTACCACCATGGG
TTGGTTTCCATGAAGAAGCTGTGATGAAAAGTCAAATTCTCGCCCTATCT
GCTACTATTGTTGGAGATTTCAGTCGTGAAAATGAGAAATTTATACATGA
ACGTGATCAAAGACGTGTTGGTTATCTTTATACATTTGCTGACAAAGCAA
CCAAAACAGCAACGAAATTAAAAGAATCGGTTGACCAAAGACTTGAACAG
ATGTGGAATTGGTTGGGAATAACAAATGATCCAAAAATACCCGAAGAAGG
TGAAACAAAAGGTGAAAGTTCTGAATCCACCGAATCTCAAGAAAATTTGA
CAACTGAAAATGGAGATACAACTCAACCACAAGGAGCTGAAAAGAAGATG
GTGGATGTAGCTGCAAACCTAAGCAGATAAAAGAAGATCGTTTCTGGAGG
AATTACTTTTACCGAGTGTCACTAATCAAACAATCTACCCAGCTATCGTC
GCTCAGTTTGAATAAAGGTATGTCCAAATATTTTTGTGTTAACATTTTGA
GATATCAATTATAGGATGAACGAAATTTTCTTCGTGACCCTCCATCAGGA
GTGGATTTTCAATTCAACCTTGAACACATGATGCCTGTTGCTCTTGCAGT
TCTCAAAGACGATGAAGAGTTGGAAAGAATGAGATTTACTGTCGTCCCAA
AAAGGTGATGCTGTACCACCATGGGTTGGTTTCCATGAAGAAGCTGTGAT
GAAAAGTCAAATTCTCGCCCTATCTGCTACTATTGTTGGAGATTTCAGTC
GTGAAAATGAGAAATTTATACATGAACGTGATCAAAGACGTGTTGGTTAT
CTTTATACATTTGCTGACAAAGCAACCAAAACAGCAACGAAATTAAAAGA
ATCGGTTGACCAAAGACTTGAACAGATGTGGAATTGGTTGGGAATAACAA
ATGATCCAAAAATACCCGAAGAAGGTGAAACAAAAGGTGAAAGTTCTGAA
TCCACCGAATCTCAAGAAAATTTGACAACTGAAAATGGAGATACAACTCA
ACCACAAGGAGCTGAAAAGAAGATGGTGGATGTAGCTGCAAACCTAAGCA
GATAAAAGAAGATCGTTTCTGGAGGAATTACTTTTACCGAGTGTCACTAA
TCAAACAATCTACCCAGCTATCGTCGCTCAGTTTGAATAAAGGTATGTCC
AAATATTTTTGTGTTAACATTTTGAGATATCAATTATAGGATGAACGAAA
TTTTCTTCGTGACCCTCCATCAGGAGTGGATTTTCAATTCAACCTTGAAC
ACATGATGCCTGTTGCTCTTGCAGTTCTCAAAGACGATGAAGAGTTGGAA
AGAATGAGATTTACTGTCGTCCCAAAAAGGTGATGCTGTACCACCATGGG
TTGGTTTCCATGAAGAAGCTGTGATGAAAAGTCAAATTCTCGCCCTATCT
GCTACTATTGTTGGAGATTTCAGTCGTGAAAATGAGAAATTTATACATGA
ACGTGATCAAAGACGTGTTGGTTATCTTTATACATTTGCTGACAAAGCAA
CCAAAACAGCAACGAAATTAAAAGAATCGGTTGACCAAAGACTTGAACAG
ATGTGGAATTGGTTGGGAATAACAAATGATCCAAAAATACCCGAAGAAGG
TGAAACAAAAGGTGAAAGTTCTGAATCCACCGAATCTCAAGAAAATTTGA
CAACTGAAAATGGAGATACAACTCAACCACAAGGAGCTGAAAAGAAGATG
GTGGATGTAGCTGCAAACCTAAGCAGATAAAAGAAGATCGTTTCTGGAGG
AATTACTTTTACCGAGTGTCACTAATCAAACAATCTACCCAGCTATCGTC
GCTCAGTTTGAATAAAGGTATGTCCAAATATTTTTGTGTTAACATTTTGA
GATATCAATTATAGGATGAACGAAATTTTCTTCGTGACCCTCCATCAGGA
GTGGATTTTCAATTCAACCTTGAACACATGATGCCTGTTGCTCTTGCAGT
TCTCAAAGACGATGAAGAGTTGGAAAGAATGAGATTTACTGTCGTCCCAA
AAAGGTGATGCTGTACCACCATGGGTTGGTTTCCATGAAGAAGCTGTGAT
GAAAAGTCAAATTCTCGCCCTATCTGCTACTATTGTTGGAGATTTCAGTC
GTGAAAATGAGAAATTTATACATGAACGTGATCAAAGACGTGTTGGTTAT
CTTTATACATTTGCTGACAAAGCAACCAAAACAGCAACGAAATTAAAAGA
ATCGGTTGACCAAAGACTTGAACAGATGTGGAATTGGTTGGGAATAACAA
ATGATCCAAAAATACCCGAAGAAGGTGAAACAAAAGGTGAAAGTTCTGAA
TCCACCGAATCTCAAGAAAATTTGACAACTGAAAATGGAGATACAACTCA
ACCACAAGGAGCTGAAAAGAAGATGGTGGATGTAGCTGCAAACCTAAGCA
GATAAAAGAAGATCGTTTCTGGAGGAATTACTTTTACCGAGTGTCACTAA
TCAAACAATCTACCCAGCTATCGTCGCTCAGTTTGAATAAAGGTATGTCC
AAATATTTTTGTGTTAACATTTTGAGATATCAATTATAGGATGAACGAAA
TTTTCTTCGTGACCCTCCATCAGGAGTGGATTTTCAATTCAACCTTGAAC
ACATGATGCCTGTTGCTCTTGCAGTTCTCAAAGACGATGAAGAGTTGGAA
AGAATGAGATTTACTGTCGTCCCAAAAAGGTGATGCTGTACCACCATGGG
TTGGTTTCCATGAAGAAGCTGTGATGAAAAGTCAAATTCTCGCCCTATCT
GCTACTATTGTTGGAGATTTCAGTCGTGAAAATGAGAAATTTATACATGA
ACGTGATCAAAGACGTGTTGGTTATCTTTATACATTTGCTGACAAAGCAA
CCAAAACAGCAACGAAATTAAAAGAATCGGTTGACCAAAGACTTGAACAG
ATGTGGAATTGGTTGGGAATAACAAATGATCCAAAAATACCCGAAGAAGG
TGAAACAAAAGGTGAAAGTTCTGAATCCACCGAATCTCAAGAAAATTTGA
CAACTGAAAATGGAGATACAACTCAACCACAAGGAGCTGAAAAGAAGATG
GTGGATGTAGCTGCAAACCTAAGCAGATAAAAGAAGATCGTTTCTGGAGG
AATTACTTTTACCGAGTGTCACTAATCAAACAATCTACCCAGCTATCGTC
GCTCAGTTTGAATAAAGGTATGTCCAAATATTTTTGTGTTAACATTTTGA
GATATCAATTATAGGATGAACGAAATTTTCTTCGTGACCCTCCATCAGGA
GTGGATTTTCAATTCAACCTTGAACACATGATGCCTGTTGCTCTTGCAGT
TCTCAAAGACGATGAAGAGTTGGAAAGAATGAGATTTACTGTCGTCCCAA
AAAGGTGATGCTGTACCACCATGGGTTGGTTTCCATGAAGAAGCTGTGAT
GAAAAGTCAAATTCTCGCCCTATCTGCTACTATTGTTGGAGATTTCAGTC
GTGAAAATGAGAAATTTATACATGAACGTGATCAAAGACGTGTTGGTTAT
CTTTATACATTTGCTGACAAAGCAACCAAAACAGCAACGAAATTAAAAGA
ATCGGTTGACCAAAGACTTGAACAGATGTGGAATTGGTTGGGAATAACAA
ATGATCCAAAAATACCCGAAGAAGGTGAAACAAAAGGTGAAAGTTCTGAA
TCCACCGAATCTCAAGAAAATTTGACAACTGAAAATGGAGATACAACTCA
ACCACAAGGAGCTGAAAAGAAGATGGTGGATGTAGCTGCAAACCTAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024407XLOC_024407Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040223-proteinTCONS_00040223-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040223-exon-sc0002354-1575043694:15164..15458TCONS_00040223-exon-sc0002354-1575043694:15164..15458Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1575043694:14895..14974TCONS_00040223-exon-sc0002354-1575043694:14895..14974Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1575043694:14580..14646TCONS_00040223-exon-sc0002354-1575043694:14580..14646Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1575043694:14214..14287TCONS_00040223-exon-sc0002354-1575043694:14214..14287Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1575043694:10626..10765TCONS_00040223-exon-sc0002354-1575043694:10626..10765Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1575043694:7754..7944TCONS_00040223-exon-sc0002354-1575043694:7754..7944Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1510915933:15164..15458TCONS_00040223-exon-sc0002354-1510915933:15164..15458Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1510915933:14895..14974TCONS_00040223-exon-sc0002354-1510915933:14895..14974Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1510915933:14580..14646TCONS_00040223-exon-sc0002354-1510915933:14580..14646Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1510915933:14214..14287TCONS_00040223-exon-sc0002354-1510915933:14214..14287Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1510915933:10626..10765TCONS_00040223-exon-sc0002354-1510915933:10626..10765Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1510915933:7754..7944TCONS_00040223-exon-sc0002354-1510915933:7754..7944Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1491911889:15164..15458TCONS_00040223-exon-sc0002354-1491911889:15164..15458Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1491911889:14895..14974TCONS_00040223-exon-sc0002354-1491911889:14895..14974Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1491911889:14580..14646TCONS_00040223-exon-sc0002354-1491911889:14580..14646Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1491911889:14214..14287TCONS_00040223-exon-sc0002354-1491911889:14214..14287Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1491911889:10626..10765TCONS_00040223-exon-sc0002354-1491911889:10626..10765Clytia hemisphaericaexon
TCONS_00040223-exon-sc0002354-1491911889:7754..7944TCONS_00040223-exon-sc0002354-1491911889:7754..7944Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002354supercontigsc0002354:7754..15458 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.5315	31.7224	8.24801	4.68148	17.0949	12.9183	32.6006	35.8747	38.4717	30.7629	26.7043	30.146	30.474	27.8836	21.0296	23.3134	37.0274	36.5399	33.694	39.4027	38.0654	35.8752	49.5405	44.9236	42.5089	37.5113	27.831	22.2968	30.8601	32.322
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD_dom
Blast
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BLAST of TCONS_00040223 vs. Swiss-Prot (Human)
Match: SYAP1 (Synapse-associated protein 1 OS=Homo sapiens GN=SYAP1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.358e-45
Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 1 
Query:  250 QGAEKKMVDVAANLSSYLYTFXXXXXX--------XXXXLKESV-----DQRLEQTIVGDFSRENEKFIHERDQRRVGDAVPPWVGFHEEAVMKSQILALSADERNFLRDPPSGVDFQFNLEHMMPVALAVLKDDEELERMRFTVVPKRIKEDRFWRNYFYRVSLIKQS 717
            Q  +++++  A +  +YL+ FA  ATK        TA  +K+SV     D  +++TI+GDF +E +KF+ E+  ++   AVPPWV  ++E  ++ QILALSAD+RNFLRDPP+GV F F+ + M PVAL +L++DE L +MRF +VPK +KE+ FWRNYFYRVSLIKQS
Sbjct:   44 QAGDQELLHQAKDFGNYLFNFASAATKKITESVAETAQTIKKSVEEGKIDGIIDKTIIGDFQKEQKKFVEEQHTKKSEAAVPPWVDTNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQS 212
The following BLAST results are available for this feature:
BLAST of TCONS_00040223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYAP11.358e-4549.11Synapse-associated protein 1 OS=Homo sapiens GN=SY... [more]
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