TCONS_00040199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040199
Unique NameTCONS_00040199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040199 ID=TCONS_00040199|Name=TCONS_00040199|organism=Clytia hemisphaerica|type=transcript|length=692bp
gaaaaacctaaagaaaaataactgacaatcaaaattatgaatatgCTATT
CCACCATCTTCTCATTTTATTGGCTTGCATTGTTTCCAGTTTTGCATCAA
GTTCAACAACTTGTCCAACAAAATGTAAGTGTTATTGGGAACGTGGTCAT
AGTGCCGTCGATGTGTtttgtacaaaccaaaatatcaCCAACAAAGATAT
TCTAGATATTGCATCCCAATTGGATACAAAAAAAACTGTGCATTTAAGTC
TCAGCAGTAATCTGATCACCGAATTTCAAGCtgaactttttgttaatttc
actAAACTTGATCGAATCACATTGAACAAAAACCAACTGACCAGATTGCC
TGCAAACATATCACTTTATATACCAAGCATCACCATTCTCGATCTAGAAG
acaataatattaataaaattaaacaaaagGACTTTGAAGGGTACGATTCT
ATCATAACTATATTTCTTCAAAGAAATGGTATTGAAAATTTGGAACCTCG
TGTTTTTCAGAATCTTTCACAACTAGAATATCTGTACGCAGGAGGTAATA
AATTGACGACTCTGCGAAAGGGTACGTTTACCGGATTAGCTAAGCTACGA
CGATTATTCTTAGCTCGTAATGATATAACGACTGTTGAAACTGGAGTCTT
TGTTGATCTTCCATCTTTGGTGACCTTGGACTTGCCGTACAA
Run BLAST on NCBI

transcript from alignment at sc0002350:2..3960-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040199 ID=TCONS_00040199|Name=TCONS_00040199|organism=Clytia hemisphaerica|type=transcript|length=3959bp|location=Sequence derived from alignment at sc0002350:2..3960- (Clytia hemisphaerica)
GAAAAACCTAAAGAAAAATAACTGACAATCAAAATTATGAATATGCTATT
CCACCATCTTCTCATTTTATTGGCTTGCATTGTTTCCAGTTTTGCATCAA
GTTCAACAACTTGTCCAACAAAATGTAAGTGTTATTGGGAACGTGGTCAT
AGTGCCGTCGATGTGTTTTGTACAAACCAAAATATCACCAACAAAGATAT
TCTAGATATTGCATCCCAATTGGATACAAAAAAAACTGTGCATTTAAGTC
TCAGCAGTAATCTGATCACCGAATTTCAAGCTGAACTTTTTGTTAATTTC
ACTAAACTTGATCGAATCACATTGAACAAAAACCAACTGACCAGATTGCC
TGCAAACATATCACTTTATATACCAAGCATCACCATTCTCGATGTAGAAG
ACAATAATATTAATAAAATTAAACAAAAGGACTTTGAAGGGTACGATTCT
ATCATATCTATATTCCTTCAAAGAAATGGTATTGAAAATTTGGAACCTCG
TGTTTTTCAGAATCTTTCAAAACTAGAATATCTGTACGCAGGAGGTAATA
AATTGACGACTTTACGAAAGGGTACGTTTACCGGATTAGCTAAGTTACGA
CGATTATTCTTAGCTGGTAATGATATAACGACTGTTGAAACTGGAGTCTT
TGGTGATCTTCCGTCTTTGAGTTGGATATACTTGCAGTTCAATAAGATAA
CAACAGCACGAAGAGATTGGTTTGGTTCAGCTGTTCCTGAAATATTCAGA
CTATTGAGACTCGAGAACAACCCATTGATATGCGATTGTGTTATGCATTA
TACAATTACTTATTTTGAAAGTTACCATGATGGAACAGTTTGGGGTTGGT
GCAATGGTATTGGAAGATTGGAAGATTTCTACCGCAAGAACAAATTAAAT
TGTAGTTCCTGCTTTGTCAATGAATGCCAAAACAATGCAACATGTCAAGT
TGTTGACCAATTCAGTCAGATAAGTAACGTTTCAATGGGATATACATGTC
AATGCAAAGAAGGTTATCATGGTCAACAATGTCAATTATCAACTCCAGAT
ACTGGTTTCATCATCTTAATGGTGGTGTTGGCGATATTAGTTTTGATTGG
ATTGGTTGGGTTGGCTATCTTTTTGAGACGTCGAAGAGGACACAAAGATA
ATGGCGAGGAGGTGAACATGTCTCAAAACAAATGATCAGAGAAATTGGAA
GGCGTCCCTGTGTAGTTGAATCATGGAGGTTAAATACCGTCAAATCTCTC
ACTAACTAATTCGAACTTCTGCAATTCGTATCTTTCCGTATTTGGAACTG
AAATATTGGTCCCCTCAACTGGACAATGATATAAAATACTCTCTGTAATT
CGAATACTTCTTAAATTCGAAGAAGATTATCTGCCCTTCAAAAATCGAAT
TAGAGAGAGTCAACTGTATATCGATGTAATCAATAACGCTATAGCTAAAG
ATCTTTAGAACACACTTTAAATCTTTTATAGTCAAATAACTGGATGTTTT
ATGTTAATGTTGGTGTTCTTTTGTAGTGTTTTAACANNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNGCTACTCAGTGAGAGCATGGGTATTT
AAGACTTAGTTTGAATTTGCTTATATTTGGTTTGAATTTCGTGCCAAAAT
AAGCTGTTAATAATTAATATGTGTATAACACAAACTATAAAATCACTTTA
TTCTCATTTTCAGGAAAAACCTAAAGAAAAATAACTGACAAACAAAATTA
TGAATATGCTATTCCACCATCTTCTCATTTTATTGGCTTGCATTGTTTCC
AGTTTTGCAANGAATATGCTATTCCACCATCTTCTCATTTTATTGGCTTG
CATTGTTTCCAGTTTTGCATCAAGTTCAACAACTTGTCCAACAAAATGTA
AGTGTTATTGGGATCATAGTGCCGTCGATGTGCATTGTGAAAACCAAAAT
ATCACCAATAAAGATCTTCTGGATATTACATCACAATTGGATAAAAATAA
AACTGAATATTTAGATCTCAGCAGAAACCTAATCACCGAATTTCAAGCTG
AACTTTTTGTTAATTTCACTAAACTTGATCGAATCTTGTTGAACGAAAAC
CAACTGACCAGATTGCCTGCAAACGTATCACTTTATATACCAAGCATCAC
CATTCTCGAGCTAGAAGACAATAATATTAATAAAATTAAACAAAAGGACT
TTGAAGGGTACGATTCTATCATAACTATATTTCTTCAAAGAAATGGTATT
GAAAATTTGGAACCTCGTGTTTTTCAGAATCTTTCACAACTAGAATATCT
GTACGCAGGAGGTAATAAATTGACGACTCTGCGAAAGGGTACGTTTACCG
GATTAGCTAAGCTACGACGATTATTCTTAGCTCGTAATGATATAACGACT
GTTGAAACTGGAGTCTTTGTTGATCTTCCATCTTTGGTGACCTTGGACTT
GCCGTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024394XLOC_024394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040199-exon-sc0002350-1575043694:3568..3960TCONS_00040199-exon-sc0002350-1575043694:3568..3960Clytia hemisphaericaexon
TCONS_00040199-exon-sc0002350-1575043694:2..300TCONS_00040199-exon-sc0002350-1575043694:2..300Clytia hemisphaericaexon
TCONS_00040199-exon-sc0002350-1510915933:3568..3960TCONS_00040199-exon-sc0002350-1510915933:3568..3960Clytia hemisphaericaexon
TCONS_00040199-exon-sc0002350-1510915933:2..300TCONS_00040199-exon-sc0002350-1510915933:2..300Clytia hemisphaericaexon
TCONS_00040199-exon-sc0002350-1491911889:3568..3960TCONS_00040199-exon-sc0002350-1491911889:3568..3960Clytia hemisphaericaexon
TCONS_00040199-exon-sc0002350-1491911889:2..300TCONS_00040199-exon-sc0002350-1491911889:2..300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002350supercontigsc0002350:2..3960 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.2909	0.777298	0.816819	2.15586	0.418063	2.59511	3.0472	2.43068	3.17397	1.05779	1.93626	2.32016	0.278595	4.25853	7.48009	0.79201	0.551532	0	0	0	0.698601	1.26415	0.959541	0.859294	1.82671	2.24561	0	1.71992	1.34369
Blast
[Close]
BLAST of TCONS_00040199 vs. Swiss-Prot (Human)
Match: ALS (Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.135e-20
Identity = 56/214 (26.17%), Postives = 95/214 (44.39%), Query Frame = 1 
Query:   97 SSSTTCPTKCKCYWERGHSAVDVFCTNQNIT------------------NKDILDIASQLDTKKTVHLSLSSNLITEFQAELFVNFTKLDRITLNKNQLTRLPANISLYIPSITILDLEDNNINKIKQKDFEGYDSIITIFLQRNGIENLEPRVFQNLSQLEYLYAGGNKLTTLRKGTFTGLAKLRRLFLARNDITTVETGVFVDLPSLVTLDL 684
            +    CP  C C ++     + VFC+++N+T                  N   +  A+  +      L+L    +   + +  +    L  + L +NQL  L      + P++  L L +N +++++   FEG  S+  + L  N +  L    F+ L  L  L   GN+L  L+   F+GLA+LR L L+RN +  ++  VFV LP L  L L
Sbjct:   36 AEGPACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYL 249
The following BLAST results are available for this feature:
BLAST of TCONS_00040199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALS6.135e-2026.17Insulin-like growth factor-binding protein complex... [more]
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