TCONS_00040196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040196
Unique NameTCONS_00040196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040196 ID=TCONS_00040196|Name=TCONS_00040196|organism=Clytia hemisphaerica|type=transcript|length=695bp
GTACGGCAAGTCCAAGGTCACCAAAGATGGAAGATCAACAAAGACTCCAG
TTTCAACAGTCGTTATATCATTACGAGCTAAGAATAATCGTCGTAGCTTA
GCTAATCCGGTAAACGTACCCTTTCGCAGAGTCGTCAATTTATTACCTCC
TGCGTACAGATATTCTAGTTGTGAAAGATTCTGAAAAACACGAGGTTCCA
AATTTTCAATACCATTTCTTTGAAGGAATATAGATATGATAGAATCGTAC
CCTTCAAAGTCcttttgtttaattttattaatattattgtCTTCTACATC
GAGAATGGTGATGCTTGGTATATAAAGTGATATGTTTGCAGGCAATCTGG
TCAGTTGGTTTTTGTTCAATGTGATTCGATCAAGTTTagtgaaattaaca
aaaagttcaGCTTGAAATTCGGTGATCAGATTACTGCTGAGACTTAAATG
CACAGTTTTTTTTGTATCCAATTGGGATGCAATATCTAGAATATCTTTGT
TGGtgatattttggtttgtacaaaACACATCGACGGCACTATGACCACGT
TCCCAATAACACTTACATTTTGTTGGACAAGTTGTTGAACTTGATGCAAA
ACTGGAAACAATGCAAGCCAATAAAATGAGAAGATGGTGGAATAGcatat
tcataattttgattgtcagttatttttctttaggtttttcctgaa
Run BLAST on NCBI

transcript from alignment at sc0002350:4..3965+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040196 ID=TCONS_00040196|Name=TCONS_00040196|organism=Clytia hemisphaerica|type=transcript|length=3962bp|location=Sequence derived from alignment at sc0002350:4..3965+ (Clytia hemisphaerica)
GTACGGCAAGTCCAAGGTCACCAAAGATGGAAGATCAACAAAGACTCCAG
TTTCAACAGTCGTTATATCATTACGAGCTAAGAATAATCGTCGTAGCTTA
GCTAATCCGGTAAACGTACCCTTTCGCAGAGTCGTCAATTTATTACCTCC
TGCGTACAGATATTCTAGTTGTGAAAGATTCTGAAAAACACGAGGTTCCA
AATTTTCAATACCATTTCTTTGAAGAAATATAGTTATGATAGAATCGTAC
CCTTCAAAGTCcttttgtttaattttattaatattattgtCTTCTAGCTC
GAGAATGGTGATGCTTGGTATATAAAGTGATACGTTTGCAGGCAATCTGG
TCAGTTGGTTTTCGTTCAACAAGATTCGATCAAGTTTagtgaaattaaca
aaaagttcaGCTTGAAATTCGGTGATTAGGTTTCTGCTGAGATCTAAATA
ttcagttttatttttatccAATTGTGATGTAATATCCAGAAGATCTTTAT
TGGTGATATTTTGGTTTTCACAATGCACATCGACGGCACTATGATCCCAA
TAACACTTACATTTTGTTGGACAAGTTGTTGAACTTGATGCAAAACTGGA
AACAATGCAAGCCAATAAAATGAGAAGATGGTGGAATAGCATATTCNTTG
CAAAACTGGAAACAATGCAAGCCAATAAAATGAGAAGATGGTGGAATAGC
ATATTCATAATTTTGTTTGTCAGTTATTTTTCTTTAGGTTTTTCCTGAAA
ATGAGAATAAAGTGATTTTATAGTTTGTGTTATACACATATTAATTATTA
ACAGCTTattttggcacgaaattcaaaccaaatataAGCAAATTCAAACT
AAGTCTTAAATACCCATGCTCTCACTGAGTAGCNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNTGTTAAAACACTACAAAAGAACACCAACA
TTAACATAAAACATCCAGTTATTTGACTATAAAAGATTTAAAGTGTGTTC
TAAAGATCTTTAGCTATAGCGTTATTGATTACATCgatatacagttgact
ctctctaattcgatttttgaAGGGCAGATAATCTTCTTCGAATTTAAGAa
gtattcgaattacagagagtattttatatcattgtccagttgaggggacc
aatatttcaGTTCCAAATACGGAAAGATACGAATTgcagaagttcgaatt
agttAGTGAGAGATTTGACGGTATTTAACCTCCATGATTCAACTACACAG
GGACGCCTTCCAATTTCTCTGATCATTTGTTTTGAGACATGTTCACCTCC
TCGCCATTATCTTTGTGTCCTCTTCGACGTCTCAAAAAGATAGCCAACCC
AACCAATCCAATCAAAACTAATATCGCCAACACCACCATTAAGATGATGA
AACCAGTATCTGGAGTTGATAATTGACATTGTTGACCATGATAACCTTCT
TTGCATTGACATGTATATCCCATTGAAACGTTACTTATCTGACTGAATTG
GTCAACAACTTGACATGTTGCATTGTTTTGGCATTCATTGACAAAGCAGG
AACTAcaatttaatttgttcttgCGGTAGAAATCTTCCAATCTTCCAATA
CCATTGCACCAACCCCAAACTGTTCCATCATGGTAACTTTCAAAATAAGT
AATTGTATAATGCATAACACAATCGCATATCAATGGGTTGTTCTCGAGTC
TCAATAGTCTGAATATTTCAGGAACAGCTGAACCAAACCAATCTCTTCGT
GCTGTTGTTATCTTattgaactgcaagtatatccAACTCAAAGACGGAAG
ATCACCAAAGACTCCAGTTTCAACAGTCGTTATATCATTACCAGCTAAGA
ATAATCGTCGTAACTTAGCTAATCCGGTAAACGTACCCTTTCGTAAAGTC
GTCAATTTATTACCTCCTGCGTACAGATATTCTAGTTTTGAAAGATTCTG
AAAAACACGAGGTTCCAAATTTTCAATACCATTTCTTTGAAGGAATATAG
ATATGATAGAATCGTACCCTTCAAAGTCcttttgtttaattttattaata
ttattgtCTTCTACATCGAGAATGGTGATGCTTGGTATATAAAGTGATAT
GTTTGCAGGCAATCTGGTCAGTTGGTTTTTGTTCAATGTGATTCGATCAA
GTTTagtgaaattaacaaaaagttcaGCTTGAAATTCGGTGATCAGATTA
CTGCTGAGACTTAAATGCACAGTTTTTTTTGTATCCAATTGGGATGCAAT
ATCTAGAATATCTTTGTTGGtgatattttggtttgtacaaaACACATCGA
CGGCACTATGACCACGTTCCCAATAACACTTACATTTTGTTGGACAAGTT
GTTGAACTTGATGCAAAACTGGAAACAATGCAAGCCAATAAAATGAGAAG
ATGGTGGAATAGcatattcataattttgattgtcagttatttttctttag
gtttttcctgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024393XLOC_024393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040196-exon-sc0002350-1491911889:4..197TCONS_00040196-exon-sc0002350-1491911889:4..197Clytia hemisphaericaexon
TCONS_00040196-exon-sc0002350-1510915933:4..197TCONS_00040196-exon-sc0002350-1510915933:4..197Clytia hemisphaericaexon
TCONS_00040196-exon-sc0002350-1575043694:4..197TCONS_00040196-exon-sc0002350-1575043694:4..197Clytia hemisphaericaexon
TCONS_00040196-exon-sc0002350-1491911889:3465..3965TCONS_00040196-exon-sc0002350-1491911889:3465..3965Clytia hemisphaericaexon
TCONS_00040196-exon-sc0002350-1510915933:3465..3965TCONS_00040196-exon-sc0002350-1510915933:3465..3965Clytia hemisphaericaexon
TCONS_00040196-exon-sc0002350-1575043694:3465..3965TCONS_00040196-exon-sc0002350-1575043694:3465..3965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002350supercontigsc0002350:4..3965 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.74941	4.36576	3.32898	2.66479	0	0.813337	0.118537	0	2.5235	2.37577	1.54807	0.7114	1.35531	5.16022	8.67734	10.9349	0	3.30134	0	0.53419	0.25566	0	3.24835	2.54278	0	0	2.17518	1.40136	0	0.920169
Blast
[Close]
BLAST of TCONS_00040196 vs. Swiss-Prot (Human)
Match: ALS (Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.219e-20
Identity = 55/214 (25.70%), Postives = 95/214 (44.39%), Query Frame = -3 
Query:    7 SSSTTCPTKCKCYWERGHSAVDVFCTNQNIT------------------NKDILDIASQLDTKKTVHLSLSSNLITEFQAELFVNFTKLDRITLNKNQLTRLPANISLYIPSITILDVEDNNINKIKQKDFEGYDSIISIFLQRNGIENLEPRVFQNLSQLEYLYAGGNKLTTLRKGTFTGLAKLRRLFLARNDITTVETGVFVDLPSLVTLDL 594
            +    CP  C C ++     + VFC+++N+T                  N   +  A+  +      L+L    +   + +  +    L  + L +NQL  L      + P++  L + +N +++++   FEG  S+  + L  N +  L    F+ L  L  L   GN+L  L+   F+GLA+LR L L+RN +  ++  VFV LP L  L L
Sbjct:   36 AEGPACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYL 249
The following BLAST results are available for this feature:
BLAST of TCONS_00040196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALS9.219e-2025.70Insulin-like growth factor-binding protein complex... [more]
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