TCONS_00040195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040195
Unique NameTCONS_00040195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040195 ID=TCONS_00040195|Name=TCONS_00040195|organism=Clytia hemisphaerica|type=transcript|length=745bp
TTGTACGGCAAGTCCAAGGTCACCAAAGATGGAAGATCAACAAAGACTCC
AGTTTCAACAGTCGTTATATCATTACGAGCTAAGAATAATCGTCGTAGCT
TAGCTAATCCGGTAAACGTACCCTTTCGCAGAGTCGTCAATTTATTACCT
CCTGCGTACAGATATTCTAGTTGTGAAAGATTCTGAAAAACACGAGGTTC
CAAATTTTCAATACCATTTCTTTGAAGAAATATAGTTATGATAGAATCGT
ACCCTTCAAAGTCcttttgtttaattttattaatattattgtCTTCTAGC
TCGAGAATGGTGATGCTTGGTATATAAAGTGATACGTTTGCAGGCAATCT
GGTCAGTTGGTTTTCGTTCAACAAGATTCGATCAAGTTTagtgaaattaa
caaaaagttcaGCTTGAAATTCGGTGATTAGGTTTCTGCTGAGATCTAAA
TAttcagttttatttttatccAATTGTGATGTAATATCCAGAAGATCTTT
ATTGGTGATATTTTGGTTTTCACAATGCACATCGACGGCACTATGATCCC
AATAACACTTACATTTTGTTGGACAAGTTGTTGAACTTGATGCAAAACTG
GAAACAATGCAAGCCAATAAAATGAGAAGATGGTGGAATAGCATATTCNT
TGCAAAACTGGAAACAATGCAAGCCAATAAAATGAGAAGATGGTGGAATA
GCATATTCATAATTTTGTTTGTCAGTTATTTTTCTTTAGGTTTTT
Run BLAST on NCBI

transcript from alignment at sc0002350:2..746+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040195 ID=TCONS_00040195|Name=TCONS_00040195|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at sc0002350:2..746+ (Clytia hemisphaerica)
TTGTACGGCAAGTCCAAGGTCACCAAAGATGGAAGATCAACAAAGACTCC
AGTTTCAACAGTCGTTATATCATTACGAGCTAAGAATAATCGTCGTAGCT
TAGCTAATCCGGTAAACGTACCCTTTCGCAGAGTCGTCAATTTATTACCT
CCTGCGTACAGATATTCTAGTTGTGAAAGATTCTGAAAAACACGAGGTTC
CAAATTTTCAATACCATTTCTTTGAAGAAATATAGTTATGATAGAATCGT
ACCCTTCAAAGTCcttttgtttaattttattaatattattgtCTTCTAGC
TCGAGAATGGTGATGCTTGGTATATAAAGTGATACGTTTGCAGGCAATCT
GGTCAGTTGGTTTTCGTTCAACAAGATTCGATCAAGTTTagtgaaattaa
caaaaagttcaGCTTGAAATTCGGTGATTAGGTTTCTGCTGAGATCTAAA
TAttcagttttatttttatccAATTGTGATGTAATATCCAGAAGATCTTT
ATTGGTGATATTTTGGTTTTCACAATGCACATCGACGGCACTATGATCCC
AATAACACTTACATTTTGTTGGACAAGTTGTTGAACTTGATGCAAAACTG
GAAACAATGCAAGCCAATAAAATGAGAAGATGGTGGAATAGCATATTCNT
TGCAAAACTGGAAACAATGCAAGCCAATAAAATGAGAAGATGGTGGAATA
GCATATTCATAATTTTGTTTGTCAGTTATTTTTCTTTAGGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024393XLOC_024393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040195-exon-sc0002350-1491911889:2..746TCONS_00040195-exon-sc0002350-1491911889:2..746Clytia hemisphaericaexon
TCONS_00040195-exon-sc0002350-1510915933:2..746TCONS_00040195-exon-sc0002350-1510915933:2..746Clytia hemisphaericaexon
TCONS_00040195-exon-sc0002350-1575043694:2..746TCONS_00040195-exon-sc0002350-1575043694:2..746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002350supercontigsc0002350:2..746 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.87495	4.5027	2.29781	1.6139	4.05473	2.13965	4.70984	2.355	1.74305	0.939566	0.941931	0.450368	1.43691	1.23663	3.34361	6.00401	0.992482	1.01781	0.0743458	0.274315	0	0.505582	2.39283	1.18453	0.238838	0.565372	2.18347	0.186706	0.45308	0.517587
Blast
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BLAST of TCONS_00040195 vs. Swiss-Prot (Human)
Match: ALS (Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.230e-19
Identity = 59/212 (27.83%), Postives = 95/212 (44.81%), Query Frame = -3 
Query:   15 SSSTTCPTKCKCYWDHSA--VDVHCENQNITN-KDLLDITSQ---LDKNKTE--------------YLDLSRNLITEFQAELFVNFTKLDRILLNENQLTRLPANVSLYIPSITILELEDNNINKIKQKDFEGYDSIITIFLQRNGIENLEPRVFQNLSQLEYLYAGGNKLTTLRKGTFTGLAKLRRLFLARNDITTVETGVFVDLPSLVTL 590
            +    CP  C C +D  A  + V C ++N+T   D +   +Q   LD N                 +L+L    +   + +  +    L  + L  NQL  L      + P++  L L +N +++++   FEG  S+  + L  N +  L    F+ L  L  L   GN+L  L+   F+GLA+LR L L+RN +  ++  VFV LP L  L
Sbjct:   36 AEGPACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKL 247
The following BLAST results are available for this feature:
BLAST of TCONS_00040195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALS7.230e-1927.83Insulin-like growth factor-binding protein complex... [more]
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