TCONS_00040194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040194
Unique NameTCONS_00040194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040194 ID=TCONS_00040194|Name=TCONS_00040194|organism=Clytia hemisphaerica|type=transcript|length=1852bp
CTCGGAATGTATAATGTTATAAAATATGGAACTTGTAAAGGCAGTGAATG
ATTGTTTGAAAGTTAATGGTTATGTTATAAAGAAACAGCAGCTTACAGCA
ATCTCTTATATCTATCAGGGCTTTGATACACTTTGTATTTTGCCAACTAA
TTTTGGGAAAAGTCTGATTTACCAGGTTATTCCTTCAGTTTTCAAAAAGT
TGGAAGGACAGCCTCCCAATCCCATCGTGGTTTGTTTATCACCTTTAATA
TCGTTGATTAAAGACCAAGTAACTTCAGCTAATAATTCTGGCTATGGACT
TAATGCCATTCAACTAGATACTACCAAATACGATGAAATAGCATCTGGCA
AATTCAACTTGATACTGGGATCACCTGAGAACTGGTTGAATAAAAAATGG
AAAAACATGCTTTCGACAAAGATTTTTCGTGAGAATTTAGTTTGCATAGT
AGTAGATGAAGTGCACAAAGTGACATGGGGTGCAGCTTCTTCTACCTCAG
ACAAACCATTTAGGGAAGCTTACAGCCAGATTTCTTCTTTCCGATCTATT
GGTCGAGAAAAAGTACCAATCTTGGCCTTAAGTGCCACAATTGATGGAGA
TCTCACAAAATTAGTTGTTAACTCATGTTCACTTTCTAACCGATTTCGGA
CTGTTAGCTCTTATGTTGATCGCCGTAATGTTAGGTTGTCAgttgtcaaa
ataaaaagaaaagactTGAATTCGCTCACGTGGCTGTTATCAGACCTTAT
TGAGTCTTATAATGGAAATATTCCTTTTCCACGATCCATAATTTTTTGTC
GCAGTTTGCAATTGGCTGGATGGGTTTatgttaaaatttttaagattcTA
AAACAATCAATACCAGAAGATTTATCAAAGCTGGCTCTTGGCCTTTTTCA
TAGCATGACACCAGAAAACAATAAGAAAAGAATCTTAGATGCTTTGACTT
CAGACGATGATAATCCTCTAAAGATCGTAATTGCTACCAGTTCCCTAGGT
TGTGGCgttaatatgaaaaatattactTATGTCATTCATTTTGGCCCTGC
TTATGACCTAGTTGATTATTGTCAGCAAGTTGGGCGTGCAGGAAGAGGAA
ATATGGAGTCACTATGTCATGGCATTTTGTATTCCTATTCTGATGGCAGA
ACACAAATatctgaaaaaatgaaatcataTATTAACAGTGAACAATGTCT
GAGAAGGTTTTTATACGCCCCATTCAATAACAATGAAATAACCATTGAAT
CAGTCGTTCCAGCCCATAAATGCTGCATTGTGTGTGCTGTCAAATGTAAA
TGCGGCagttgtgagttattttcttttGAGAAGGTTAAACTTCTAGCAAG
TGAAGAAATCCAGCTAGAGCCATTTCGTGAAGTTCCAGATTATATGAGAA
TGTtggtaaaaaatgttttgttagaGTATCGTGCTCTAAATCTCAATCGT
ACAATGTTTTTAAATGTTGAATTTACTTCAGGGTTGAGTGATGAAGCaat
tgacgaaattttggatCACCTTCCTTTCATAAATTCACTCTCCTACATCG
ATGAAAATATTGCAATTGTTGACACACGTGTTCAGTATGAGGTTTTGGAA
ATAATTTATGaaagttttgaagattttgagatgACTCCTTGTCTATTTGA
TTCAGTCAATAATAgagaaaacattgaaaaagttGTTTTCACATCAGATT
CAGACATCACAATTTCAGATCATTctgaaaatgaggactagaTTTCTATC
ACCTCTTTTGGTGGCTTGTAGTTATTTATgtatttcttctcttttttttc
tttttgattgctTTAATAGaaattatatatgtgtttaaaaaatcttaaaa
at
Run BLAST on NCBI

protein sequence of TCONS_00040194-protein

>TCONS_00040194-protein ID=TCONS_00040194-protein|Name=TCONS_00040194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp
MELVKAVNDCLKVNGYVIKKQQLTAISYIYQGFDTLCILPTNFGKSLIYQ
VIPSVFKKLEGQPPNPIVVCLSPLISLIKDQVTSANNSGYGLNAIQLDTT
KYDEIASGKFNLILGSPENWLNKKWKNMLSTKIFRENLVCIVVDEVHKVT
WGAASSTSDKPFREAYSQISSFRSIGREKVPILALSATIDGDLTKLVVNS
CSLSNRFRTVSSYVDRRNVRLSVVKIKRKDLNSLTWLLSDLIESYNGNIP
FPRSIIFCRSLQLAGWVYVKIFKILKQSIPEDLSKLALGLFHSMTPENNK
KRILDALTSDDDNPLKIVIATSSLGCGVNMKNITYVIHFGPAYDLVDYCQ
QVGRAGRGNMESLCHGILYSYSDGRTQISEKMKSYINSEQCLRRFLYAPF
NNNEITIESVVPAHKCCIVCAVKCKCGSCELFSFEKVKLLASEEIQLEPF
REVPDYMRMLVKNVLLEYRALNLNRTMFLNVEFTSGLSDEAIDEILDHLP
FINSLSYIDENIAIVDTRVQYEVLEIIYESFEDFEMTPCLFDSVNNRENI
EKVVFTSDSDITISDHSENED
Run BLAST on NCBI

transcript from alignment at sc0002349:14280..16131

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040194 ID=TCONS_00040194|Name=TCONS_00040194|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at sc0002349:14280..16131 (Clytia hemisphaerica)
atttttaagattttttaaacacatatataatttCTATTAAagcaatcaaa
aagaaaaaaaagagaagaaatacATAAATAACTACAAGCCACCAAAAGAG
GTGATAGAAAtctagtcctcattttcagAATGATCTGAAATTGTGATGTC
TGAATCTGATGTGAAAACaactttttcaatgttttctcTATTATTGACTG
AATCAAATAGACAAGGAGTcatctcaaaatcttcaaaactttCATAAATT
ATTTCCAAAACCTCATACTGAACACGTGTGTCAACAATTGCAATATTTTC
ATCGATGTAGGAGAGTGAATTTATGAAAGGAAGGTGatccaaaatttcgt
caattGCTTCATCACTCAACCCTGAAGTAAATTCAACATTTAAAAACATT
GTACGATTGAGATTTAGAGCACGATACtctaacaaaacattttttaccaA
CATTCTCATATAATCTGGAACTTCACGAAATGGCTCTAGCTGGATTTCTT
CACTTGCTAGAAGTTTAACCTTCTCaaaagaaaataactcacaactGCCG
CATTTACATTTGACAGCACACACAATGCAGCATTTATGGGCTGGAACGAC
TGATTCAATGGTTATTTCATTGTTATTGAATGGGGCGTATAAAAACCTTC
TCAGACATTGTTCACTGTTAATAtatgatttcattttttcagatATTTGT
GTTCTGCCATCAGAATAGGAATACAAAATGCCATGACATAGTGACTCCAT
ATTTCCTCTTCCTGCACGCCCAACTTGCTGACAATAATCAACTAGGTCAT
AAGCAGGGCCAAAATGAATGACATAagtaatatttttcatattaacGCCA
CAACCTAGGGAACTGGTAGCAATTACGATCTTTAGAGGATTATCATCGTC
TGAAGTCAAAGCATCTAAGATTCTTTTCTTATTGTTTTCTGGTGTCATGC
TATGAAAAAGGCCAAGAGCCAGCTTTGATAAATCTTCTGGTATTGATTGT
TTTAgaatcttaaaaattttaacatAAACCCATCCAGCCAATTGCAAACT
GCGACAAAAAATTATGGATCGTGGAAAAGGAATATTTCCATTATAAGACT
CAATAAGGTCTGATAACAGCCACGTGAGCGAATTCAagtcttttcttttt
attttgacaacTGACAACCTAACATTACGGCGATCAACATAAGAGCTAAC
AGTCCGAAATCGGTTAGAAAGTGAACATGAGTTAACAACTAATTTTGTGA
GATCTCCATCAATTGTGGCACTTAAGGCCAAGATTGGTACTTTTTCTCGA
CCAATAGATCGGAAAGAAGAAATCTGGCTGTAAGCTTCCCTAAATGGTTT
GTCTGAGGTAGAAGAAGCTGCACCCCATGTCACTTTGTGCACTTCATCTA
CTACTATGCAAACTAAATTCTCACGAAAAATCTTTGTCGAAAGCATGTTT
TTCCATTTTTTATTCAACCAGTTCTCAGGTGATCCCAGTATCAAGTTGAA
TTTGCCAGATGCTATTTCATCGTATTTGGTAGTATCTAGTTGAATGGCAT
TAAGTCCATAGCCAGAATTATTAGCTGAAGTTACTTGGTCTTTAATCAAC
GATATTAAAGGTGATAAACAAACCACGATGGGATTGGGAGGCTGTCCTTC
CAACTTTTTGAAAACTGAAGGAATAACCTGGTAAATCAGACTTTTCCCAA
AATTAGTTGGCAAAATACAAAGTGTATCAAAGCCCTGATAGATATAAGAG
ATTGCTGTAAGCTGCTGTTTCTTTATAACATAACCATTAACTTTCAAACA
ATCATTCACTGCCTTTACAAGTTCCATATTTTATAACATTATACATTCCG
AG

Coding sequence (CDS) from alignment at sc0002349:14280..16131

>TCONS_00040194 ID=TCONS_00040194|Name=TCONS_00040194|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at sc0002349:14280..16131 (Clytia hemisphaerica)
ctagtcctcattttcagAATGATCTGAAATTGTGATGTCTGAATCTGATG
TGAAAACaactttttcaatgttttctcTATTATTGACTGAATCAAATAGA
CAAGGAGTcatctcaaaatcttcaaaactttCATAAATTATTTCCAAAAC
CTCATACTGAACACGTGTGTCAACAATTGCAATATTTTCATCGATGTAGG
AGAGTGAATTTATGAAAGGAAGGTGatccaaaatttcgtcaattGCTTCA
TCACTCAACCCTGAAGTAAATTCAACATTTAAAAACATTGTACGATTGAG
ATTTAGAGCACGATACtctaacaaaacattttttaccaACATTCTCATAT
AATCTGGAACTTCACGAAATGGCTCTAGCTGGATTTCTTCACTTGCTAGA
AGTTTAACCTTCTCaaaagaaaataactcacaactGCCGCATTTACATTT
GACAGCACACACAATGCAGCATTTATGGGCTGGAACGACTGATTCAATGG
TTATTTCATTGTTATTGAATGGGGCGTATAAAAACCTTCTCAGACATTGT
TCACTGTTAATAtatgatttcattttttcagatATTTGTGTTCTGCCATC
AGAATAGGAATACAAAATGCCATGACATAGTGACTCCATATTTCCTCTTC
CTGCACGCCCAACTTGCTGACAATAATCAACTAGGTCATAAGCAGGGCCA
AAATGAATGACATAagtaatatttttcatattaacGCCACAACCTAGGGA
ACTGGTAGCAATTACGATCTTTAGAGGATTATCATCGTCTGAAGTCAAAG
CATCTAAGATTCTTTTCTTATTGTTTTCTGGTGTCATGCTATGAAAAAGG
CCAAGAGCCAGCTTTGATAAATCTTCTGGTATTGATTGTTTTAgaatctt
aaaaattttaacatAAACCCATCCAGCCAATTGCAAACTGCGACAAAAAA
TTATGGATCGTGGAAAAGGAATATTTCCATTATAAGACTCAATAAGGTCT
GATAACAGCCACGTGAGCGAATTCAagtcttttctttttattttgacaac
TGACAACCTAACATTACGGCGATCAACATAAGAGCTAACAGTCCGAAATC
GGTTAGAAAGTGAACATGAGTTAACAACTAATTTTGTGAGATCTCCATCA
ATTGTGGCACTTAAGGCCAAGATTGGTACTTTTTCTCGACCAATAGATCG
GAAAGAAGAAATCTGGCTGTAAGCTTCCCTAAATGGTTTGTCTGAGGTAG
AAGAAGCTGCACCCCATGTCACTTTGTGCACTTCATCTACTACTATGCAA
ACTAAATTCTCACGAAAAATCTTTGTCGAAAGCATGTTTTTCCATTTTTT
ATTCAACCAGTTCTCAGGTGATCCCAGTATCAAGTTGAATTTGCCAGATG
CTATTTCATCGTATTTGGTAGTATCTAGTTGAATGGCATTAAGTCCATAG
CCAGAATTATTAGCTGAAGTTACTTGGTCTTTAATCAACGATATTAAAGG
TGATAAACAAACCACGATGGGATTGGGAGGCTGTCCTTCCAACTTTTTGA
AAACTGAAGGAATAACCTGGTAAATCAGACTTTTCCCAAAATTAGTTGGC
AAAATACAAAGTGTATCAAAGCCCTGATAGATATAAGAGATTGCTGTAAG
CTGCTGTTTCTTTATAACATAACCATTAACTTTCAAACAATCATTCACTG
CCTTTACAAGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024392XLOC_024392Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040194-proteinTCONS_00040194-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040194-exon-sc0002349-1491911889:14280..16131TCONS_00040194-exon-sc0002349-1491911889:14280..16131Clytia hemisphaericaexon
TCONS_00040194-exon-sc0002349-1510915933:14280..16131TCONS_00040194-exon-sc0002349-1510915933:14280..16131Clytia hemisphaericaexon
TCONS_00040194-exon-sc0002349-1575043694:14280..16131TCONS_00040194-exon-sc0002349-1575043694:14280..16131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002349supercontigsc0002349:14280..16131 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12956	0.126341	0.195592	0.215276	4.48444	3.29054	3.30363	3.61261	1.38291	1.23964	0.70006	0.733431	0.43083	0.596562	0.232966	0.500017	1.06986	1.811	0.436128	0.528436	1.00212	1.00815	0.321859	0.517707	0.0695512	1.32422	0.88826	0.347591	0.647105	0.732553
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00040194 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.124e-28
Identity = 113/408 (27.70%), Postives = 195/408 (47.79%), Query Frame = 2 
Query:  104 SYIYQGFDTLCILPTNFGKSLIYQVIPSVFKKLEGQPPNPIVVCLSPLISLIKDQVTS---ANNSGYGLNAIQLDTTKYDEIASGKFNLILGSPENWL-NKKWKNMLSTKIFRENLVCIVVDEVHKVT-WGAASSTSDKPFREAYSQISSFRSIGREKVPILALSATIDGDLTKLVVNSCSLSNRFRTVSSYVDRRNVRLSVVKIKRKDLNSLTWLLSDLIE-SYNGNIPFPRSIIFCRSLQLAGWVYVKIFKILKQSIPEDLSKLALGLFHSMTPENNKKRILDALTSDDDNPLKIVIATSSLGCGVNMKNITYVIHFGPAYDLVDYCQQVGRAGRGNMESLCHGILYSYSD---GRTQISE---------------KMKSYINSEQCLRRFLYAPFNNNEITIESV 1255
            S + +  D + ++ T +GKSL +Q  P    K        I + +SPLISL++DQV     +N     L + Q +    D I  GK+ ++  +PE    N      L   I    +  I VDE H ++ WG         FR+++ ++ S ++     VPI+AL+AT    + + +V   +L N   T + + DR N+ L V   +RK  N L  L   L++ S +     P +II+C S ++   V  ++ K+           L+ G +H+    + +K I      D+   ++ VIAT + G G+N  +I  VIH+G   D+  Y Q++GRAGR  ++S CH +L++ +D    R  ++E               KM+ Y++S +C R+ + + F + ++   S+
Sbjct:  559 SVLEERRDNVAVMATGYGKSLCFQYPPVYVGK--------IGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLTD-IKLGKYRIVYVTPEYCSGNMGLLQQLEADI---GITLIAVDEAHCISEWG-------HDFRDSFRKLGSLKT-ALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGF-DRPNLYLEV---RRKTGNILQDLQPFLVKTSSHWEFEGP-TIIYCPSRKMTQQVTGELRKL----------NLSCGTYHAGMSFSTRKDIHHRFVRDE---IQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCH-VLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASL 927
The following BLAST results are available for this feature:
BLAST of TCONS_00040194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN6.124e-2827.70Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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