TCONS_00040160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040160
Unique NameTCONS_00040160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040160 ID=TCONS_00040160|Name=TCONS_00040160|organism=Clytia hemisphaerica|type=transcript|length=1036bp
CGAATTATTATATGTTTAAAAGACATCGATGGTGTTGAATTTGGCTACGC
TTCGGCCTTCTTGAGGATTGTTTCAATTTTTTCTCACCATCAAATGTATT
GGTTACGTAATGAATAATCAATGAATTTAAAGATTATTCACCTTTTGTTG
GAATGTGTCAATTTCTTCCTCTGTCAGTTTTGGTTTAGTGATCATACAGT
TCTTCAAAGACCTTGTCGTAAAAGCATTTTCAGATTACCATATCTCATCT
TGGTCAATTATCGTGTGAAACAGTCCCTCCTCTAAACGATCGGTTATCCG
ATGGAGCAAATGAAGCTCATCTACGATATACTTTTCCAAACAAACGTTCT
CAAGAAGCCTGTCATCTTTGCACCATGGTTGTTTCTTCTAGTTTGAGAAG
GTTCGTTTCTTGCCAGATTTTAAGGGCTCTTGTCTGAAAATAGATGAATA
CACTGTTTAACAGGATCATGTGCAGTTTACGGTGCCCTTGGTCAAATTAC
GATTCACCAAAAACCCTCACTGGTCCAGCGTTTGCCCTAATTACCATTTG
CAATAGTACACAATTCGCCTAAAGCCCCCAATGGTCCAGCGTTTACCCTA
ATAGCCATTTCCACTGGTACACAATTCACCCAAAACCCTCACTGGTCCAG
CGTTTACCCTAATAGCCATTTCCACTGGTACACAATTCACCCAAAACCCT
CACTGGTCCAGTGTTTACCCAAATTACCATTTCCACTGGTACACAATTCA
CCCAAAACCCCCACTGGTTCAGCGTTTGCCCTAATAACCATATCCAGTGG
TACACAATTCACCCAAAGTCCCCACTGGTCCAGCGTTTATCCTAATTACC
ATATCCACTGGTACACGATTCACCCGATTTACTATTTCACTGGTACACGA
TCCACCCAAATCCCCACTGGTCCAGCGTTTGCCCTAATTAACATCTCCAC
TACTTCACAATTCAACCAAAACCCTCACTTGTCCAGCGTTTACCCAAATT
ACCATTTCCACTGGTACACAATTCACCCAAAACCCC
Run BLAST on NCBI

transcript from alignment at sc0002333:12224..14745+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040160 ID=TCONS_00040160|Name=TCONS_00040160|organism=Clytia hemisphaerica|type=transcript|length=2522bp|location=Sequence derived from alignment at sc0002333:12224..14745+ (Clytia hemisphaerica)
CGAATTATTATATGTTTAAAAGGTATGTATGAAAATATTCAGCTAATTGT
GATATATGTACagcaattttataaaaaataattaaattatcaaaatttct
atGAACATTGAACAAGACTAACAAATATTATGTTACCTTTtttagggaag
aaattttcacaggattTGATTACGctgttcacagctcaaaattcagaagt
ttcgcgggaatttaatttagcggtTTAGAGAAATTTTGTTTATAATATGA
CCTTTTTTGCCCTAGTAGGGGTGATTTTCAGAATCTTGAAAATATTTGTG
TTTCGTGGATTTGTCAAACAATTTAGCGAAAAACTTTCCCGTGAAAATTT
CTTTCCTTAAAGTAACGTAAGTAATGATTGGAACCATTCTCTAATTCAAT
TTAGCAAATTTTAGAATTTAAATGAAAACTATTAATACTTTTTTCTTCAA
AAATATAGACATCGATGGTGTTGAATTTGGCTACGCTTCGGCCTTCTTGA
GGTATGCTCTTTTTTTCTTTCAAAACCCTCTTCTTCCAGGCATGTCATTC
TCTTCTCAACTATCAAAAGATTGACACACCGTCCTTTCTATCGATTTTTG
ATTGAAAAACCTTCCTCAAATCATCATTTTTCTTCTCGACACTGTAAAAT
TTAGTTACAATCAAATGAAAAGTACAGAAAAATTTAGAGAGTGTGGTTTT
AATAAGAAGTTATAATTTACATTGGCCAGAGAAGATTCGCAAGGTTCCAT
ATTTTCGCAGAATGTCAGGGACATGCTTAGCCAAAATATGGATGGAGGGT
GTCATAGGATGGTTCCCACTATATCCAAAACCGTTCATTTTCTTGAGCCT
ACCAATCCACTCGTAGGTCTAAAAATAATTTTGATTTTATTTCAGGATTG
TTTCAATTTTTTCTCACCATCAAATGTATTGGTTACGTAATGAATAATCA
ATGAATTTAAAGATTATTCACCTTTTGTTGGAATGTGTCAATTTCTTCCT
CTGTCAGTTTTGGTTTAGTGATCATACAGTTCTTCAAAGACCTTGTCGTA
AAAGGTAAAAAAACAACATTACAACAATGTCTCTGCCCTAATTTAGTAAC
TTACAGTCACCTAACAGTATTATTGAAAGATATTTGATAAGACTTAATAA
ATAACTATTATTATAAGACGTGTTTAATTTAATAAAAATCTAAGGTCTGT
AGTAGATTCGAGATTTTGGCAAGGACTTAATTTGAAAATCCGCTGAAATT
CCTTCCCTTAAGGTAGATGTTTTTACCTTCCAAAGTAGCCGTGTTGGTAA
GACATCTTTCTCAGGGAGCAATTCACTAAAGTATTGTGGCAACTTTCTTA
GCATTTTCTTCTTATCTGTTCCCATTAAACTTGTTCATTCAAGTTTCTTT
GATTTCTTCTCCCTCCAAAATGTCAGCGTGACCCCAATCCTTTTCATCAA
CTCGATCAGTTTATTTTCCAAGAAGTTGTTGCCATTTTTCTATGAATAAA
GAGATTGTGTTTTATTATTATTGTTTTAAAGAAATAATCAGATGGTTTGA
GATATTTAGATTACAGAAAACCTCTTTGGTCCTTAGTAAATCCTCAAAGT
ATTTTTGTGTAACAATTTTCCAAAAGATGAATCCCACATGCCAAATATTC
CAAACCATCTGATTATGGACCTTCATCTTCATCAAGTTACAATTACAGAT
TATATTTCAGCATTTTCAGATTACCATATCTCATCTTGGTCAATTATCGT
GTGAAACAGTCCCTCCTCTAAACGATCGGTTATCCGATGGAGCAAATGAA
GCTCATCTACGATATACTTTTCCAAACAAACGTTCTCAAGAAGCCTGTCA
TCTTTGCACCATGGTTGTTTCTTCTAGTTTGAGAAGGTTCGTTTCTTGCC
AGATTTTAAGGGCTCTTGTCTGAAAATAGATGAATACACTGTTTAACAGG
ATCATGTGCAGTTTACGGTGCCCTTGGTCAAATTACGATTCACCAAAAAC
CCTCACTGGTCCAGCGTTTGCCCTAATTACCATTTGCAATAGTACACAAT
TCGCCTAAAGCCCCCAATGGTCCAGCGTTTACCCTAATAGCCATTTCCAC
TGGTACACAATTCACCCAAAACCCTCACTGGTCCAGCGTTTACCCTAATA
GCCATTTCCACTGGTACACAATTCACCCAAAACCCTCACTGGTCCAGTGT
TTACCCAAATTACCATTTCCACTGGTACACAATTCACCCAAAACCCCCAC
TGGTTCAGCGTTTGCCCTAATAACCATATCCAGTGGTACACAATTCACCC
AAAGTCCCCACTGGTCCAGCGTTTATCCTAATTACCATATCCACTGGTAC
ACGATTCACCCGATTTACTATTTCACTGGTACACGATCCACCCAAATCCC
CACTGGTCCAGCGTTTGCCCTAATTAACATCTCCACTACTTCACAATTCA
ACCAAAACCCTCACTTGTCCAGCGTTTACCCAAATTACCATTTCCACTGG
TACACAATTCACCCAAAACCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024364XLOC_024364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040160-exon-sc0002333-1491911889:12224..12245TCONS_00040160-exon-sc0002333-1491911889:12224..12245Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1510915933:12224..12245TCONS_00040160-exon-sc0002333-1510915933:12224..12245Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1575043694:12224..12245TCONS_00040160-exon-sc0002333-1575043694:12224..12245Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1491911889:12682..12724TCONS_00040160-exon-sc0002333-1491911889:12682..12724Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1510915933:12682..12724TCONS_00040160-exon-sc0002333-1510915933:12682..12724Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1575043694:12682..12724TCONS_00040160-exon-sc0002333-1575043694:12682..12724Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1491911889:13119..13277TCONS_00040160-exon-sc0002333-1491911889:13119..13277Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1510915933:13119..13277TCONS_00040160-exon-sc0002333-1510915933:13119..13277Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1575043694:13119..13277TCONS_00040160-exon-sc0002333-1575043694:13119..13277Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1491911889:13934..14745TCONS_00040160-exon-sc0002333-1491911889:13934..14745Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1510915933:13934..14745TCONS_00040160-exon-sc0002333-1510915933:13934..14745Clytia hemisphaericaexon
TCONS_00040160-exon-sc0002333-1575043694:13934..14745TCONS_00040160-exon-sc0002333-1575043694:13934..14745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002333supercontigsc0002333:12224..14745 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.171597	0.0418336	0.145718	0.0950418	0.115704	0	0	0.103269	0	0.0895563	0	0.0285707	0	0.118519	0.073079	0.0261416	0	0	0	0	0	0.0606938	0.0491875	0	0.0460591	0.0411067	0.235294	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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