|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040159 ID=TCONS_00040159|Name=TCONS_00040159|organism=Clytia hemisphaerica|type=transcript|length=1398bp
GGCTTTTTAAAAGGCGTAAGACTTGAGGAATCTGGCTGACAGGAGGAACT
AATAAATTTCGCTCTAAGCGCCAGTCTTGGGTGAAGGCCTCTGTACCGGG
CACAACATACTTGGAATTAAACCTCTCGCATTTTGCATTGTCAAAATTAG
CGAATCTGTNCAGTCTTGGGTGAAGGCGTCAACAGCCTCTGTACCGGGCA
CAACATACTTGGAATTAAACCTCTCGCATTTTGCATTGTCAAAATTAGCG
AATCTCACGACTGTAAAGTTACCCCAACGATGTTCGAGAAAGTGCAAAAA
TTCCTCTGTGATTTCCCAGTCGTCTGGATCTATTATTTTAGAAACTCTGT
CCGCTACTCGGTTCTCGTCCCTAGGAACCCAATTCACTTCCACATTTATA
TTAAAGTTACGAGACAATTCGTAGATTCTTAGTGCTAATTCTTGTAAATG
GGGCTTATTGCTACCACCTGAAGAAACATACATGGCTGCTCTATTATCTG
TCATCCAAGATATGGAAGAGTTACTTAACTTATGGCAAAATGAATCCAAT
CCGAATCTGATCGCTTCGAGTTCCCTCCAAGTTGAACTTCTATCAATTTC
CTCTACATCAAACATTTTGTGACACACATTTAAAATTGAATTCTCTTTTA
ATACAGCTCCTATCCCACTGCTACTTGCGTCAGAATAGATAGTATACTTC
ACTTGGGACTTTAACACGCTTTTGTTATTTAATACATTTACATTGTCTCT
CCAAAAAAGAATTTCTCTGTGAGCGTCTggataattgaaaatgttaaacT
TCCCATCCCATGAGACAGCTTCATCAATGGCTTTGTATAAAGATCTAGTT
TTTAATTTGATAATGTTTGACAAaacaaatttcattgaaacgACTTTTCC
TGTTAGGCGACACAAAACTCGTGCTGTTGTGTAAGGACTTCTCAAAATAA
ATTCGATTGTTGAAAGAAGAGAAGATATACGCTGCTGAGtgattttGAGA
AACCGAGGAATGTTTGGTATTCTGGAGCAATGCTAACATGATGGTAACCC
TTTCTAAGGTCGAACTTGAATAAAAAACCCCCAGGGCAAACAAAATGTTG
GAAAACTCGCCAATCGTCAAACCTTATGTGCTCCGAGAGCAAAAACTTGT
TGACGTGACGCAAATCAAGAATCAACCGTTGTTTTCCGGATGGGCGTGTG
TCTACAGAGAGAGGGTTAACTACATGCGGCTCGAAAGGCACTTCTAAAAT
GGATCCGGATTTCAGAAGATCTTGCAAAGTCGAAGATACAAAGGATGTGT
TACTATAAGCTGATTcattatttttcatgtttttatacGTAGGTTGTGAA
ATAAAAGGCAGTTTGTATCCATGCTTTATTATATCTAATATAAATTCA Run BLAST on NCBI transcript from alignment at sc0002331:23310..25026- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040159 ID=TCONS_00040159|Name=TCONS_00040159|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at sc0002331:23310..25026- (Clytia hemisphaerica)
GGCTTTTTAAAAGGCGTAAGACTTGAGGAATCTGGCTGACAGGAGGAACT
AATAAATTTCGCTCTAAGCGCCAGTCTTGGGTGAAGGCCTCTGTACCGGG
CACAACATACTTGGAATTAAACCTCTCGCATTTTGCATTGTCAAAATTAG
CGAATCTGTNCAGTCTTGGGTGAAGGCGTCAACAGCCTCTGTACCGGGCA
CAACATACTTGGAATTAAACCTCTCGCATTTTGCATTGTCAAAATTAGCG
AATCTCACGACTGTAAAGTTACCCCAACGATGTTCGAGAAAGTGCAAAAA
TTCCTCTGTGATTTCCCAGTCGTCTGGATCTATTATTTTAGAAACTCTGT
CCGCTACTCGGTTCTCGTCCCTAGGAACCCAATTCACTTCCACATTTATA
TTAAAGTTACGAGACAATTCGTAGATTCTTAGTGCTAATTCTTGTAAATG
GGGCTTATTGCTACCACCTGAAGAAACATACATGGCTGCTCTATTATCTG
TCATCCAAGATATGGAAGAGTTACTTAACTTATGGCAAAATGAATCCAAT
CCGAATCTGATCGCTTCGAGTTCCCTCCAAGTTGAACTTCTATCAATTTC
CTCTACATCAAACATTTTGTGACACACATTTAAAATTGAATTCTCTTTTA
ATACAGCTCCTATCCCACTGCTACTTGCGTCAGAATAGATAGTATACTTC
ACTTGGGACTTTAACACGCTTTTGTTATTTAATACATTTACATTGTCTCT
CCAAAAAAGAATTTCTCTGTGAGCGTCTGGATAATTGAAAATGTTAAACT
TCCCATCCCATGAGACAGCTTCATCAATGGCTTTGTATAAAGATCTAGTT
TTTAATTTGATAATGTTTGACAAAACAAATTTCATTGAAACGACTTTTCC
TGTTAGGCGACACAAAACTCGTGCTGTTGTGTAAGGACTTCTCAAAATAA
ATTCGATTGTTGAAAGAAGAGAAGATATACGCTGCTGAGTGATTTTGTAA
GTATTTTCGAAAAGATTAAGGTCAACTCCAAGCCAAGTTATTTTCCTTGA
AGGCTGCCATTGTGACTTATCTTCGTTAACAACAAACCCTGTGTCAGTCA
AAAGAGCTCTTGTCATTAGGGATGCCTGCTTGGCGGAATCCTCAGTAGAG
TCTATCCCTGCCCCGTCATCCAAGTATACTGCTATTTTTATCCCTTGTTT
ATGCCACACTGACACGAGTGGTCTCAAAAGTTTATTAAAAACCATAGGAG
CTGTCGAAAGACCAAATGGTAAAACAGTAAACACAAAATACTTCTTTTTT
CCTTTTATTTTCCAGGAGAAACCGAGGAATGTTTGGTATTCTGGAGCAAT
GCTAACATGATGGTAACCCTTTCTAAGGTCGAACTTGAATAAAAAACCCC
CAGGGCAAACAAAATGTTGGAAAACTCGCCAATCGTCAAACCTTATGTGC
TCCGAGAGCAAAAACTTGTTGACGTGACGCAAATCAAGAATCAACCGTTG
TTTTCCGGATGGGCGTGTGTCTACAGAGAGAGGGTTAACTACATGCGGCT
CGAAAGGCACTTCTAAAATGGATCCGGATTTCAGAAGATCTTGCAAAGTC
GAAGATACAAAGGATGTGTTACTATAAGCTGATTCATTATTTTTCATGTT
TTTATACGTAGGTTGTGAAATAAAAGGCAGTTTGTATCCATGCTTTATTA
TATCTAATATAAATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040159-exon-sc0002331-1575043694:24031..25026 | TCONS_00040159-exon-sc0002331-1575043694:24031..25026 | Clytia hemisphaerica | exon |
| TCONS_00040159-exon-sc0002331-1575043694:23310..23711 | TCONS_00040159-exon-sc0002331-1575043694:23310..23711 | Clytia hemisphaerica | exon |
| TCONS_00040159-exon-sc0002331-1510915933:24031..25026 | TCONS_00040159-exon-sc0002331-1510915933:24031..25026 | Clytia hemisphaerica | exon |
| TCONS_00040159-exon-sc0002331-1510915933:23310..23711 | TCONS_00040159-exon-sc0002331-1510915933:23310..23711 | Clytia hemisphaerica | exon |
| TCONS_00040159-exon-sc0002331-1491911889:24031..25026 | TCONS_00040159-exon-sc0002331-1491911889:24031..25026 | Clytia hemisphaerica | exon |
| TCONS_00040159-exon-sc0002331-1491911889:23310..23711 | TCONS_00040159-exon-sc0002331-1491911889:23310..23711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002331 | supercontig | sc0002331:23310..25026 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
