TCONS_00040147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040147
Unique NameTCONS_00040147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040147 ID=TCONS_00040147|Name=TCONS_00040147|organism=Clytia hemisphaerica|type=transcript|length=750bp
ATAACAACgagagaaaaaatttcaagaacatAAATTTCGATTTCTTTACA
CGATGTCACCAATAGAAGCACAATCTTTTCATTTAATTCAATCCATCAGC
CAGCGTTGTAGATGTGGTGTGTTAATTACAGACTGCAGTAATTGCTTGGA
CGAGTATAATCgtgaaaaagaattgaaagtcAAACGATGTATAGGATGTA
ACGATGTGATCCCTGACTGGGACATTGCACGACATGGCAAACTGAACAGT
AGGTGCATGAACAATGAATTCTCAAATACAATCAACTATGAATTTCCTAC
TGAAGATCAAGTCCGGATCGAAATCGTAGCCTATCAACAAGATAGAGAAA
AACTTTATCCAGCCAAAGTACTTTGTTTTAATATTCCCTACTCGGCCCAA
AATTTGATGTCAGACATTAAAAATAGGATTGAGTATTCACTTGGTATCCC
TACAGAACATCAATTAATCGTGGAGCCTCACAAAAATGTTTATGAGATTC
TAGAACCGTTGGAAAGTGTATCATATTTTTCTTATCAACAAGAAGAAAGA
ACTGTTCGCTTTCCTGAAACTTCTCATCTTGCACAAAAAGATATCAAAGT
AATACATCTCCATTTAGCGGTGTTACAAGATGAATTTACGAGCACTAAAA
CTAAACAAATTTACGAGGTGATGGGTATCGAACAATACCAAGAGCTCGAA
ATTAAAGCATTCGGCTCACGTAAAACTTTACTACCACCAAggtattacac
Run BLAST on NCBI

protein sequence of TCONS_00040147-protein

>TCONS_00040147-protein ID=TCONS_00040147-protein|Name=TCONS_00040147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MSPIEAQSFHLIQSISQRCRCGVLITDCSNCLDEYNREKELKVKRCIGCN
DVIPDWDIARHGKLNSRCMNNEFSNTINYEFPTEDQVRIEIVAYQQDREK
LYPAKVLCFNIPYSAQNLMSDIKNRIEYSLGIPTEHQLIVEPHKNVYEIL
EPLESVSYFSYQQEERTVRFPETSHLAQKDIKVIHLHLAVLQDEFTSTKT
KQIYEVMGIEQYQELEIKAFGSRKTLLPPRYY
Run BLAST on NCBI

transcript from alignment at sc0002328:11130..11879

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040147 ID=TCONS_00040147|Name=TCONS_00040147|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at sc0002328:11130..11879 (Clytia hemisphaerica)
gtgtaataccTTGGTGGTAGTAAAGTTTTACGTGAGCCGAATGCTTTAAT
TTCGAGCTCTTGGTATTGTTCGATACCCATCACCTCGTAAATTTGTTTAG
TTTTAGTGCTCGTAAATTCATCTTGTAACACCGCTAAATGGAGATGTATT
ACTTTGATATCTTTTTGTGCAAGATGAGAAGTTTCAGGAAAGCGAACAGT
TCTTTCTTCTTGTTGATAAGAAAAATATGATACACTTTCCAACGGTTCTA
GAATCTCATAAACATTTTTGTGAGGCTCCACGATTAATTGATGTTCTGTA
GGGATACCAAGTGAATACTCAATCCTATTTTTAATGTCTGACATCAAATT
TTGGGCCGAGTAGGGAATATTAAAACAAAGTACTTTGGCTGGATAAAGTT
TTTCTCTATCTTGTTGATAGGCTACGATTTCGATCCGGACTTGATCTTCA
GTAGGAAATTCATAGTTGATTGTATTTGAGAATTCATTGTTCATGCACCT
ACTGTTCAGTTTGCCATGTCGTGCAATGTCCCAGTCAGGGATCACATCGT
TACATCCTATACATCGTTTgactttcaattctttttcacGATTATACTCG
TCCAAGCAATTACTGCAGTCTGTAATTAACACACCACATCTACAACGCTG
GCTGATGGATTGAATTAAATGAAAAGATTGTGCTTCTATTGGTGACATCG
TGTAAAGAAATCGAAATTTatgttcttgaaattttttctctcGTTGTTAT

Coding sequence (CDS) from alignment at sc0002328:11130..11879

>TCONS_00040147 ID=TCONS_00040147|Name=TCONS_00040147|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0002328:11130..11879 (Clytia hemisphaerica)
gtaataccTTGGTGGTAGTAAAGTTTTACGTGAGCCGAATGCTTTAATTT
CGAGCTCTTGGTATTGTTCGATACCCATCACCTCGTAAATTTGTTTAGTT
TTAGTGCTCGTAAATTCATCTTGTAACACCGCTAAATGGAGATGTATTAC
TTTGATATCTTTTTGTGCAAGATGAGAAGTTTCAGGAAAGCGAACAGTTC
TTTCTTCTTGTTGATAAGAAAAATATGATACACTTTCCAACGGTTCTAGA
ATCTCATAAACATTTTTGTGAGGCTCCACGATTAATTGATGTTCTGTAGG
GATACCAAGTGAATACTCAATCCTATTTTTAATGTCTGACATCAAATTTT
GGGCCGAGTAGGGAATATTAAAACAAAGTACTTTGGCTGGATAAAGTTTT
TCTCTATCTTGTTGATAGGCTACGATTTCGATCCGGACTTGATCTTCAGT
AGGAAATTCATAGTTGATTGTATTTGAGAATTCATTGTTCATGCACCTAC
TGTTCAGTTTGCCATGTCGTGCAATGTCCCAGTCAGGGATCACATCGTTA
CATCCTATACATCGTTTgactttcaattctttttcacGATTATACTCGTC
CAAGCAATTACTGCAGTCTGTAATTAACACACCACATCTACAACGCTGGC
TGATGGATTGAATTAAATGAAAAGATTGTGCTTCTATTGGTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024353XLOC_024353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040147-proteinTCONS_00040147-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040147-exon-sc0002328-1491911889:11130..11879TCONS_00040147-exon-sc0002328-1491911889:11130..11879Clytia hemisphaericaexon
TCONS_00040147-exon-sc0002328-1510915933:11130..11879TCONS_00040147-exon-sc0002328-1510915933:11130..11879Clytia hemisphaericaexon
TCONS_00040147-exon-sc0002328-1575043694:11130..11879TCONS_00040147-exon-sc0002328-1575043694:11130..11879Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002328supercontigsc0002328:11130..11879 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.357771	0.529641	0.447764	0.0962992	4.92927	3.0989	0.864538	1.30375	0.548771	1.68839	2.50909	0.218373	0.412398	0.202565	0.223424	0.640147	0.443063	0.521027	0.139422	0.400252	0	0.121695	0.331361	0.463144	0.900748	0.832786	0.449603	0.604969	0.685843	0.209958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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