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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040143 ID=TCONS_00040143|Name=TCONS_00040143|organism=Clytia hemisphaerica|type=transcript|length=2397bp
attcttttaaaaattttcaacacaTGAAATGCTATCATATAAAGGATATT
ATCGCATTACATTTTTGCTAGACAAAAATCTGTCTAGTTTTGTCATAATA
ATCTTTCCATCTCTCATTTTTAAAACAGTTGTAAATAGGGAGagcgaaaa
agtcaaaataaaattgtgacgGAGAACACTGTTGGTAAACCACAGGAATA
TAAAGttaataaaccagccgaggctggaaggtcagccaatagagcttagc
tagatagcNACCACAGGAATATAAAGTTAAGAATTGAGCTCGGATGTTCC
GGTGATTTTTAAGTAGTTCCGtacataaaaaatgttttttttttgtaaat
ttatgcGAAAACTTTACATTCTCATATTCAACGCTAAAACTAATGCACTA
TTTAACCATCTTTTTGTACCTTGGAAAACATTGGAACGCGTAAACCTAAC
TCGGATAAACTACATTTGGCACTCTCAACACTTTTCTATAAAGCACTGAA
AGAATTGTTTCCTACAATCAGGCTTTATCCTTGTTTTGCAGAGTCATCgt
gttttatgatttttatgaataactttgtGCAATTTTTATACTTTATGCTT
TTATGCTGAGTATCACCCCTTCATGATGGGTTTCTCGTGGTTCAACCAAA
TATCTGATAACCTGTTAAATAAtttgatttataaaaatatttgcttttat
ttatgatttacaatagaattctatTTTAGATATTCACCTGCACTGCACGA
GCATGAATTCGTGATCCTACatgatttcctttttttatcGAATCAAGTGA
CCCTCGATCACAGGGGGAGGGTTGCATTTAGGAAAAGCGAGCTCTGGTAA
ACCCTAAAGTTAataaaaaaccatcaaaaagtaATTCAGTCTATAAAAAG
GGTTCTAAAAtcttagtctctctaagggagtcgtaaaaacttcaaaaatt
ggACACAATTTCCAAAATTCTGTCTCTGTAAAAGGGTCAATTGTTGAGCT
TTGGTTCGCATGAAGCTCCATAGTTTTAATATCGCAAACCCAATAACCCA
CAGGCCCTTCATTCATGGTACCCGGTATGTATTATCTATAACAGGTCTTT
AACATTCTCATTACATGACGTTACAATCCGATCGAGATTTATCGATTCGC
AAATGCAATCGACGAAATTCATACAACTTTTGATCACTATTTAACGACAA
GACAACATCATTGTTCATATCTTTCATCTCCAAAATCTGACTCTTCTTCA
ATTTCTGCGTCttcaaaatttccttaattAAGGTTTTGACATTCTTACAT
GCCAGATCACTTTCAATGATTTCGTAAAATACAGTTACCTCTCCAGTGTC
CACGAATGTGAGCTGTATCACGACACGCTGCTTCATCAAGATTTTATCAC
CTTCTAAAAGATTATACTCTGCAAGAGTGTGACCGTCTTCTAACTGTCGG
ACATCTTTGGAGCTCcacaaatcaataaaaaaataattctcctCATTCTT
TGCCTGTCCAATAGCCTCCGCCACCCTGTTTTTAAGGACAATGACCTCGT
CATTATCGCTTACTTTCATGGTGAACGAAGAGCCAAAAGAAGTAGAAAGA
GCTTCAAAGTTTACTCTAGGTTTTACGATCCATATGTCGAACGGTTTCTT
TTCCATTACCGAATTGGGTATTATTTGAACCACGAGGTGTTTTTNGCGAA
CGAAGAAGAGCCGTAACGGTTGGCAAGAGCTTGAACATTTACTTTAGGTT
TAATCCAAATGTTGAAGGGATGTTTATCGATAACCAAATTCAAAGTCATT
TGGCCCGGTGAATTatactttaaaaataaatcGAATGTTTTACGATGATC
ACTTAATTTTTCGCCTTTAAAATAGATGACCTGGTCAGAGTTTCGGATGT
TGTATTTCTGACGAACATACTTACGAACATGGCTAACATATTTGAATAGC
TCTGACCTCAACACTTCTTCTTTGGTCAAAAACTGTAGTTTAAACGTATT
GAAATCCTTTATAGGTTTAACAAGGTGCTCCTcgcaaatttcatcaaatt
gtTTTTCGTTTGTGAATTTGCCACCGTAACAAACAACGGTCAGATATAAA
ATACCACCTTGAATAATGTCCGCCTGATCCTGATGCGTTTCATTTACTTC
TTCCACATCATCTGCGTCGAAGACATCTTTTTAAATGTATTCATTATTCT
CGAAGCGCCGTTTCCCTTCACTATCTACTAAGACTTGATTGCGCGCCGGA
ATACCGAAAGCTTGTTGTATTTGGGTTCGTATTAAATCTCCTGaacggta
cacgtttttttttttttaagaaacacacttttaagaaacatgaggctcag
aatgcctaaaaactaagaaacatctaagaaacatgctgaggctgagc Run BLAST on NCBI transcript from alignment at sc0002328:8427..10823+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040143 ID=TCONS_00040143|Name=TCONS_00040143|organism=Clytia hemisphaerica|type=transcript|length=2397bp|location=Sequence derived from alignment at sc0002328:8427..10823+ (Clytia hemisphaerica)
attcttttaaaaattttcaacacaTGAAATGCTATCATATAAAGGATATT
ATCGCATTACATTTTTGCTAGACAAAAATCTGTCTAGTTTTGTCATAATA
ATCTTTCCATCTCTCATTTTTAAAACAGTTGTAAATAGGGAGagcgaaaa
agtcaaaataaaattgtgacgGAGAACACTGTTGGTAAACCACAGGAATA
TAAAGttaataaaccagccgaggctggaaggtcagccaatagagcttagc
tagatagcNACCACAGGAATATAAAGTTAAGAATTGAGCTCGGATGTTCC
GGTGATTTTTAAGTAGTTCCGtacataaaaaatgttttttttttgtaaat
ttatgcGAAAACTTTACATTCTCATATTCAACGCTAAAACTAATGCACTA
TTTAACCATCTTTTTGTACCTTGGAAAACATTGGAACGCGTAAACCTAAC
TCGGATAAACTACATTTGGCACTCTCAACACTTTTCTATAAAGCACTGAA
AGAATTGTTTCCTACAATCAGGCTTTATCCTTGTTTTGCAGAGTCATCgt
gttttatgatttttatgaataactttgtGCAATTTTTATACTTTATGCTT
TTATGCTGAGTATCACCCCTTCATGATGGGTTTCTCGTGGTTCAACCAAA
TATCTGATAACCTGTTAAATAAtttgatttataaaaatatttgcttttat
ttatgatttacaatagaattctatTTTAGATATTCACCTGCACTGCACGA
GCATGAATTCGTGATCCTACatgatttcctttttttatcGAATCAAGTGA
CCCTCGATCACAGGGGGAGGGTTGCATTTAGGAAAAGCGAGCTCTGGTAA
ACCCTAAAGTTAataaaaaaccatcaaaaagtaATTCAGTCTATAAAAAG
GGTTCTAAAAtcttagtctctctaagggagtcgtaaaaacttcaaaaatt
ggACACAATTTCCAAAATTCTGTCTCTGTAAAAGGGTCAATTGTTGAGCT
TTGGTTCGCATGAAGCTCCATAGTTTTAATATCGCAAACCCAATAACCCA
CAGGCCCTTCATTCATGGTACCCGGTATGTATTATCTATAACAGGTCTTT
AACATTCTCATTACATGACGTTACAATCCGATCGAGATTTATCGATTCGC
AAATGCAATCGACGAAATTCATACAACTTTTGATCACTATTTAACGACAA
GACAACATCATTGTTCATATCTTTCATCTCCAAAATCTGACTCTTCTTCA
ATTTCTGCGTCttcaaaatttccttaattAAGGTTTTGACATTCTTACAT
GCCAGATCACTTTCAATGATTTCGTAAAATACAGTTACCTCTCCAGTGTC
CACGAATGTGAGCTGTATCACGACACGCTGCTTCATCAAGATTTTATCAC
CTTCTAAAAGATTATACTCTGCAAGAGTGTGACCGTCTTCTAACTGTCGG
ACATCTTTGGAGCTCcacaaatcaataaaaaaataattctcctCATTCTT
TGCCTGTCCAATAGCCTCCGCCACCCTGTTTTTAAGGACAATGACCTCGT
CATTATCGCTTACTTTCATGGTGAACGAAGAGCCAAAAGAAGTAGAAAGA
GCTTCAAAGTTTACTCTAGGTTTTACGATCCATATGTCGAACGGTTTCTT
TTCCATTACCGAATTGGGTATTATTTGAACCACGAGGTGTTTTTNGCGAA
CGAAGAAGAGCCGTAACGGTTGGCAAGAGCTTGAACATTTACTTTAGGTT
TAATCCAAATGTTGAAGGGATGTTTATCGATAACCAAATTCAAAGTCATT
TGGCCCGGTGAATTatactttaaaaataaatcGAATGTTTTACGATGATC
ACTTAATTTTTCGCCTTTAAAATAGATGACCTGGTCAGAGTTTCGGATGT
TGTATTTCTGACGAACATACTTACGAACATGGCTAACATATTTGAATAGC
TCTGACCTCAACACTTCTTCTTTGGTCAAAAACTGTAGTTTAAACGTATT
GAAATCCTTTATAGGTTTAACAAGGTGCTCCTcgcaaatttcatcaaatt
gtTTTTCGTTTGTGAATTTGCCACCGTAACAAACAACGGTCAGATATAAA
ATACCACCTTGAATAATGTCCGCCTGATCCTGATGCGTTTCATTTACTTC
TTCCACATCATCTGCGTCGAAGACATCTTTTTAAATGTATTCATTATTCT
CGAAGCGCCGTTTCCCTTCACTATCTACTAAGACTTGATTGCGCGCCGGA
ATACCGAAAGCTTGTTGTATTTGGGTTCGTATTAAATCTCCTGaacggta
cacgtttttttttttttaagaaacacacttttaagaaacatgaggctcag
aatgcctaaaaactaagaaacatctaagaaacatgctgaggctgagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040143-exon-sc0002328-1491911889:8427..10823 | TCONS_00040143-exon-sc0002328-1491911889:8427..10823 | Clytia hemisphaerica | exon |
| TCONS_00040143-exon-sc0002328-1510915933:8427..10823 | TCONS_00040143-exon-sc0002328-1510915933:8427..10823 | Clytia hemisphaerica | exon |
| TCONS_00040143-exon-sc0002328-1575043694:8427..10823 | TCONS_00040143-exon-sc0002328-1575043694:8427..10823 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002328 | supercontig | sc0002328:8427..10823 + |
Blast
The following BLAST results are available for this feature:
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