TCONS_00040142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040142
Unique NameTCONS_00040142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040142 ID=TCONS_00040142|Name=TCONS_00040142|organism=Clytia hemisphaerica|type=transcript|length=1602bp
gggtagcaaaaaatcatcaaaatttgctctgtccgggggtaatttggggt
gtccgggggtcagcagatgcttgtccggggggtaaaacctattgtccggg
gggcaaaagtcaccctgttcagggggtaaatcactaacaATTGTTATGTC
CTCCacccccccatgtacaattgtttttttctggaagagcccatttttga
actttggttCGCATAAAGCTCCATAGCTTTATATCGCAAACCCAATAACC
CAGAGGCCCTTGAATGATGGTATCCGGTAAGTATTATTTATACCGCCTCT
TATTTAACATTCTCATTACATGACGTTACAATCCGATCGAGATTTATCGA
TTCGCAAATGCAATCGACGAAATTCATACAACTTTTGATCACTATTTAAC
GACAAGACAACATCATTGTTCATATCTTTCATCTCCAAAATCTGACTCTT
CTTCAATTTCTGCGTCttcaaaatttccttaattAAGGTTTTGACATTCT
TACATGCCAGATCACTTTCAATGATTTCGTAAAATACAGTTACCTCTCCA
GTGTCCACGAATGTGAGCTGTATCACGACACGCTGCTTCATCAAGATTTT
ATCACCTTCTAAAAGATTATACTCTGCAAGAGTGTGACCGTCTTCTAACT
GTCGGACATCTTTGGAGCTCcacaaatcaataaaaaaataattctcctCA
TTCTTTGCCTGTCCAATAGCCTCCGCCACCCTGTTTTTAAGGACAATGAC
CTCGTCATTATCGCTTACTTTCATGGTGAACGAAGAGCCAAAAGAAGTAG
AAAGAGCTTCAAAGTTTACTCTAGGTTTTACGATCCATATGTCGAACGGT
TTCTTTTCCATTACCGAATTGGGTATTATTTGAACCACGAGGTGTTTTTN
GCGAACGAAGAAGAGCCGTAACGGTTGGCAAGAGCTTGAACATTTACTTT
AGGTTTAATCCAAATGTTGAAGGGATGTTTATCGATAACCAAATTCAAAG
TCATTTGGCCCGGTGAATTatactttaaaaataaatcGAATGTTTTACGA
TGATCACTTAATTTTTCGCCTTTAAAATAGATGACCTGGTCAGAGTTTCG
GATGTTGTATTTCTGACGAACATACTTACGAACATGGCTAACATATTTGA
ATAGCTCTGACCTCAACACTTCTTCTTTGGTCAAAAACTGTAGTTTAAAC
GTATTGAAATCCTTTATAGGTTTAACAAGGTGCTCCTcgcaaatttcatc
aaattgtTTTTCGTTTGTGAATTTGCCACCGTAACAAACAACGGTCAGAT
ATAAAATACCACCTTGAATAATGTCCGCCTGATCCTGATGCGTTTCATTT
ACTTCTTCCACATCATCTGCGTCGAAGACATCTTTTTAAATGTATTCATT
ATTCTCGAAGCGCCGTTTCCCTTCACTATCTACTAAGACTTGATTGCGCG
CCGGAATACCGAAAGCTTGTTGTATTTGGGTTCGTATTAAATCTCCTGaa
cggtacacgtttttttttttttaagaaacacacttttaagaaacatgagg
ctcagaatgcctaaaaactaagaaacatctaagaaacatgctgaggctga
gc
Run BLAST on NCBI

transcript from alignment at sc0002328:6785..10823+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040142 ID=TCONS_00040142|Name=TCONS_00040142|organism=Clytia hemisphaerica|type=transcript|length=4039bp|location=Sequence derived from alignment at sc0002328:6785..10823+ (Clytia hemisphaerica)
gggtagcaaaaaatcatcaaaatttgctctgtccgggggtaatttggggt
gtccgggggtcagcagatgcttgtccggggggtaaaacctattgtccggg
gggcaaaagtcaccctgttcagggggtaaatcactaacaATTGTTATGTC
CTCCacccccccatgtacaattgtttttttctggaagagcccatttttga
actttggttCGCATAAAGCTCCATAGCTTTATATCGCAAACCCAATAACC
CAGAGGCCCTTGAATGATGGTATCCGGTAAGTATTATTTATACCGCCTCT
TATTTAACATTCTCATTACATGATGTTACAATCCGATCGAGATTTATCGA
TTCGCAAATGCAATCGACGAAATTCATACAACTTTTGATCACTACTTAAC
GACAACACAACATCATTGTTCATATCTTTCATCTCCAAAATCTGACTCTT
CTTCAATTTGTGCgtcttcaaaatttctttaattaaCTTTTTGACATTCT
TACATGCCAGATCACTTTCAATGATTTCGTAAAATACAGTTACCTCTCCA
GTATTCACAAATGTGAGCTGTATCACGACACGCTGCCTCATCAAGATTTT
ATCATCTTCTTTAAGATTATACTCTGCAAGAGTGTGGCCGTCTTCTAACT
GTCGGACATCTTTGGAGCTACACAAATCAATAAAACAATAATTCTCCTCA
TTCTTTGCCTGTCCAATAGCCTCCGCCACCCTGTTTTTAAGGACAATGAC
CTCGTCATTATCGCTTACTTTCATGGTGAACGAAGAGCCAAAAGAAGTAG
AAAGAGCTTCAAAGTTTACTCTAGGTTTTACGATCCATATGTCGAACGGT
TTCTTTTCCATTGCCAAATTGGGTATTATTTGAACCAAGTGTTGTTTTTT
GGTTTTATGATATGACGGAAAGATGATGTCCCCAATAGTGTTTTTTAGCG
TCTTTTTTGAATATGTTTTGTTACTTCTCTTTACTTGTgtattttgtgta
tttttttctAATATGCACTTTTTATACAATAAGAATATTCTTGGATATgc
taagtcaagattacgtcattgtTTCATATCGGAAACACCTCCAAAACact
ggaatttgacccctgagtattactaaaaatagcaACACAGGAGTCAAATT
CcgatttttcgggtgtttccgatatgaaaaatgacgtaatcttgtcTTAC
ACATCTCAAGAAAAGGAGAAACTCTACAGTTGCCGTTACTTCTAATAAAT
GCCATCTACTTTTAAAATGCCCCAATCTCGAAAAAATAACCctcttttgg
gaaatttttttcaataaatgccCCGTGATTGTAATCTTTTAGTATTTAAA
CTGGTTTCGACCCGTTTCTACAACTCTAAGTTAACATATTTGTACTCAAA
CTTTGTACGTAATGAAAAGACAGAGCAAGGTTTCAATTAACTTTATCAGA
GTAGCGACTTTGGTtagaaattatttaataaacaaCCCCTTCTTGTAAAC
GCCCttcctaaaaacaaaaaaattaataaataaaacgCCCGAGCATTTAT
TTGAAGTAACACGGTAAACTATAAAGGAGCCATCAAAACTAACTCACGCA
TAGCACGCTCAAAAACTCTTTACATACACACTACAATCAtgcattctttt
aaaaattttcaacacaTGAAATGCTATCATATAAAGGATATTATCGCATT
ACATTTTTGCTAGACAAAAATCTGTCTAGTTTTGTCATAATAATCTTTCC
ATCTCTCATTTTTAAAACAGTTGTAAATAGGGAGagcgaaaaagtcaaaa
taaaattgtgacgGAGAACACTGTTGGTAAACCACAGGAATATAAAGtta
ataaaccagccgaggctggaaggtcagccaatagagcttagctagatagc
NACCACAGGAATATAAAGTTAAGAATTGAGCTCGGATGTTCCGGTGATTT
TTAAGTAGTTCCGtacataaaaaatgttttttttttgtaaatttatgcGA
AAACTTTACATTCTCATATTCAACGCTAAAACTAATGCACTATTTAACCA
TCTTTTTGTACCTTGGAAAACATTGGAACGCGTAAACCTAACTCGGATAA
ACTACATTTGGCACTCTCAACACTTTTCTATAAAGCACTGAAAGAATTGT
TTCCTACAATCAGGCTTTATCCTTGTTTTGCAGAGTCATCgtgttttatg
atttttatgaataactttgtGCAATTTTTATACTTTATGCTTTTATGCTG
AGTATCACCCCTTCATGATGGGTTTCTCGTGGTTCAACCAAATATCTGAT
AACCTGTTAAATAAtttgatttataaaaatatttgcttttatttatgatt
tacaatagaattctatTTTAGATATTCACCTGCACTGCACGAGCATGAAT
TCGTGATCCTACatgatttcctttttttatcGAATCAAGTGACCCTCGAT
CACAGGGGGAGGGTTGCATTTAGGAAAAGCGAGCTCTGGTAAACCCTAAA
GTTAataaaaaaccatcaaaaagtaATTCAGTCTATAAAAAGGGTTCTAA
AAtcttagtctctctaagggagtcgtaaaaacttcaaaaattggACACAA
TTTCCAAAATTCTGTCTCTGTAAAAGGGTCAATTGTTGAGCTTTGGTTCG
CATGAAGCTCCATAGTTTTAATATCGCAAACCCAATAACCCACAGGCCCT
TCATTCATGGTACCCGGTATGTATTATCTATAACAGGTCTTTAACATTCT
CATTACATGACGTTACAATCCGATCGAGATTTATCGATTCGCAAATGCAA
TCGACGAAATTCATACAACTTTTGATCACTATTTAACGACAAGACAACAT
CATTGTTCATATCTTTCATCTCCAAAATCTGACTCTTCTTCAATTTCTGC
GTCttcaaaatttccttaattAAGGTTTTGACATTCTTACATGCCAGATC
ACTTTCAATGATTTCGTAAAATACAGTTACCTCTCCAGTGTCCACGAATG
TGAGCTGTATCACGACACGCTGCTTCATCAAGATTTTATCACCTTCTAAA
AGATTATACTCTGCAAGAGTGTGACCGTCTTCTAACTGTCGGACATCTTT
GGAGCTCcacaaatcaataaaaaaataattctcctCATTCTTTGCCTGTC
CAATAGCCTCCGCCACCCTGTTTTTAAGGACAATGACCTCGTCATTATCG
CTTACTTTCATGGTGAACGAAGAGCCAAAAGAAGTAGAAAGAGCTTCAAA
GTTTACTCTAGGTTTTACGATCCATATGTCGAACGGTTTCTTTTCCATTA
CCGAATTGGGTATTATTTGAACCACGAGGTGTTTTTNGCGAACGAAGAAG
AGCCGTAACGGTTGGCAAGAGCTTGAACATTTACTTTAGGTTTAATCCAA
ATGTTGAAGGGATGTTTATCGATAACCAAATTCAAAGTCATTTGGCCCGG
TGAATTatactttaaaaataaatcGAATGTTTTACGATGATCACTTAATT
TTTCGCCTTTAAAATAGATGACCTGGTCAGAGTTTCGGATGTTGTATTTC
TGACGAACATACTTACGAACATGGCTAACATATTTGAATAGCTCTGACCT
CAACACTTCTTCTTTGGTCAAAAACTGTAGTTTAAACGTATTGAAATCCT
TTATAGGTTTAACAAGGTGCTCCTcgcaaatttcatcaaattgtTTTTCG
TTTGTGAATTTGCCACCGTAACAAACAACGGTCAGATATAAAATACCACC
TTGAATAATGTCCGCCTGATCCTGATGCGTTTCATTTACTTCTTCCACAT
CATCTGCGTCGAAGACATCTTTTTAAATGTATTCATTATTCTCGAAGCGC
CGTTTCCCTTCACTATCTACTAAGACTTGATTGCGCGCCGGAATACCGAA
AGCTTGTTGTATTTGGGTTCGTATTAAATCTCCTGaacggtacacgtttt
tttttttttaagaaacacacttttaagaaacatgaggctcagaatgccta
aaaactaagaaacatctaagaaacatgctgaggctgagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024349XLOC_024349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040142-exon-sc0002328-1491911889:6785..7092TCONS_00040142-exon-sc0002328-1491911889:6785..7092Clytia hemisphaericaexon
TCONS_00040142-exon-sc0002328-1510915933:6785..7092TCONS_00040142-exon-sc0002328-1510915933:6785..7092Clytia hemisphaericaexon
TCONS_00040142-exon-sc0002328-1575043694:6785..7092TCONS_00040142-exon-sc0002328-1575043694:6785..7092Clytia hemisphaericaexon
TCONS_00040142-exon-sc0002328-1491911889:9530..10823TCONS_00040142-exon-sc0002328-1491911889:9530..10823Clytia hemisphaericaexon
TCONS_00040142-exon-sc0002328-1510915933:9530..10823TCONS_00040142-exon-sc0002328-1510915933:9530..10823Clytia hemisphaericaexon
TCONS_00040142-exon-sc0002328-1575043694:9530..10823TCONS_00040142-exon-sc0002328-1575043694:9530..10823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002328supercontigsc0002328:6785..10823 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.800402	0.359215	0.563674	0.809763	2.06285	1.31753	0.794566	0.758143	0.481311	0.291431	0.962518	0.000227978	0.323576	0.125332	0.381249	0.630179	0.800507	0.866757	0.555566	0.214987	1.16814	1.04946	1.84173	1.49052	1.11222	0.72872	1.00755	0.512402	0.646476	0.890234
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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