TCONS_00040137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040137
Unique NameTCONS_00040137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040137 ID=TCONS_00040137|Name=TCONS_00040137|organism=Clytia hemisphaerica|type=transcript|length=1089bp
GGCGGGACTTGGTTTTCATTTGGATATGCTAGCGCTTTAGTGTAGCTTTT
ATTTGGATGATCTTTGAATTTAacaaaatcataacaaacaatTTGCCGGA
CACCGAACGTGAAATCGAGGTTATCCATAATTGTAGCCTTACAGTGAGTC
GAAATTCTTTTTGCCTGATTATCCTCCAAACGAGTTGGCACCATGAAGAC
TTTCTTGGCAACTCGATCTGTAACTATTCCTGAAGCAGTTACCATCACTC
TGAAAGGACGATCCATCTCCGTCACCGGACCTCGTGGTACCCTTCACCGT
AACTTTAACCACTTGAACTTGGAATTGACCCGAGTTAACAAGACAACTAT
CAGAGTTGACGTATGGTTTGCTTTGAGAAAACAGTTGGCTTGTCTCAGAA
CCATTTGCTCTCACATTGAAAACTTAATGAAAGGTGTTCAATATGGATTC
AGATACAAAATGAGATGTGTATATGCTCATTTCCCCATCAACTTGAACAT
CCAAGAAGACGGTAAACGAATCGAAGTACGTAACTATATTGGACAAAAGT
ATATCCGTGTTGTCAACATGAGAGATGGAGTCATTGTCAGACCATCAGGA
AACAAAGACGAAATTTGCATTGAAGGAAACGATATCGAGTCAGTCTCAAA
CTCAGCTGCTCTTATCAACCAATGTGCCAAAGCAAGGAATAAGGATATCC
GTAAATTCTTGGATGGAATCTATGTGTCTGAAAAGACTACTATTGATCCt
attgaagaataaaaaataaattgtaaaTGGAGGAAATATTAATCTTGACC
GTTTTTCGTACCCCCCTCCCAAAGTGAATCGAcgaaaaagaagattttga
agGTAGTTTGCAGTTTCCCATTGTAGATCCTCTCTTCTGATAAAGTCGTG
GTGTTAAGCGTGTTTGGGCgtacaaaaattcttttttcgaaaaaaatatt
tttcctgctcacaattttcataattttgggTCAATTTTAAACTAGAGTCT
ACTTTAGCTGATGATAATTTTCGATGGCGCCCAGTCATCAGTGAAGtcaa
gtaaatcggtaaaattacgacgacgaacgaaaatttaac
Run BLAST on NCBI

protein sequence of TCONS_00040137-protein

>TCONS_00040137-protein ID=TCONS_00040137-protein|Name=TCONS_00040137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MKTFLATRSVTIPEAVTITLKGRSISVTGPRGTLHRNFNHLNLELTRVNK
TTIRVDVWFALRKQLACLRTICSHIENLMKGVQYGFRYKMRCVYAHFPIN
LNIQEDGKRIEVRNYIGQKYIRVVNMRDGVIVRPSGNKDEICIEGNDIES
VSNSAALINQCAKARNKDIRKFLDGIYVSEKTTIDPIEE
Run BLAST on NCBI

transcript from alignment at sc0002323:10879..21607-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040137 ID=TCONS_00040137|Name=TCONS_00040137|organism=Clytia hemisphaerica|type=transcript|length=10729bp|location=Sequence derived from alignment at sc0002323:10879..21607- (Clytia hemisphaerica)
GGCGGGACTTGGTTTTCATTTGGATATGCTAGCGCTTTAGTGTAGCTTTT
ATTTGGATGATCTTTGAATTTAACAAAATCATAACAAACAATTTGCCGGA
CACCGAACGTGAAATCGAGGTTATCCATAATTGTAGCCTTACAGTGAGTC
GAAATTCTTTTTGCCTGATTATCCTCCAAACGAGTAAGTGAAACGACAAT
ACCCCTCCGAATCGTTTAAAATCTCTCCAACCCATTAGATTATCACTTTC
TTGTACACCTTAAACTGTTCTTCAAGTCTTGCTTCACATTATTCTACCAA
AATTTCCTTCATAAAACCTTATATCACTTGATATTTCCAGGTTGGCACCA
TGAAGACTTTCTTGGCAACTCGATCTGTAACTATTCCTGAAGCAGGTACG
TACTTTCGACTATTTCATTGTTGACTCTTGTTATTTTTTTACAGCCCTTA
CGAGTGTGTATTTTACAGTTAAAGTTAGGTCTGGATACTTCATCGTAACG
TATTTGATGGTGGTATAAGTGGGACTTGAATGAACATCTTACAATTTTGA
TGAATGCTGTTGTCTGGGGCTGAAGAGAAATTATGGTGGTTATGTTTGTT
GACAGCCAAATATTGGAAATTATTACTTTGATTGTCTTTGGTACAATTGG
ACATGATCATTTGGATTGAAATTTTTAAACAGAAAATTATTTTTATGTTG
GAAATGGAATTGATCTTGTATTGTTATTAAAGTTTCATCGATTCTTTCAA
GGACAACTGGAACAATGATGAAATATTTTACACAACATCAGTCAATTGTT
TTGGGTGGTAAAAGAATTTATATTGATAAGTAATTCAAAAATTAGAAAAA
TGCTACATTTCATGACCATCGTCCAACCTATCATTTTTTGGTGTTAAAAT
ATATTGCACAGCTGAGACTTGATTTGTGTAAAACATTACAAGGATTTTAT
TGATTGAAATACTATTTTTTTGTGGCAAATTGTAAAAATTTCTCTGCATA
GCATGTTGAGAAAGATGAACCCCGTCAATGCATCATCAGACTTACTGCAC
GNGTAAAAATTTCTCTGCATAGCATGTTGAGAAAGATGAACCCCGTCAAT
TACATCAGACTTACTGCACGCGTGTTCCCAAAGACAAAACAATGGAAATG
CGTCAATCCGTTCAGCTGACCAAAATGACACAAAAATGACAAAATGACCT
GTCAAGACATTATAATATCTTTTTGTTTGTTAAAGCAACCTTGACAAGGA
ATAAATAGGCTTTTCATATAGCCAAACAGAATTACCATAGCTTTTACCAA
AAAAAATATATCAAAGATTCAATTTCGCCCGGCAAACGTCCTTACGTGAA
GGTGTCCAACAGGATTTAAGCAAAACTTTGACCGGGCGCCGTGGGGGAAG
TTTTGACGTTACGTCTTAGATCTTTGGCAAGCTTGTTCTCCGCCATTTCC
AGCCAAATCCAACTTTTGTTCTTGCTGGGGCTTAGTGGAAACTTATCCTG
TCCATGTGTAAACATTCCCTTATGTTTGTTATGTACTTGACTACCTGTTG
TCAAACCGGGATATGACGGGGGTACTGCAATAAAAAGTTAGTTATGCAAG
AAAAACTAATTTCAACCTCAAAAGGTAGATAGAAACCTGTCTGCATATTT
TTTTTAAATCTGAATACTTGACGGGTCAGAGCTGTGAGTCCGATTTTGGC
CTCAAAAAAATTACAGTGGGAAATTCGAATTTAGAGTGTCCTCACTTACT
AAAATAAAAACCAAATTTTGGAACTTCGCTTTCTTTAAGAAAGTGTGACC
AGTAAAAGAATAATAAAATTTGATTGGCTATGTTTTCAACCGTTATTAGG
ATCTGGGAAATTCAAACTCTCAGCCCATACCATGCTATATATTTCGCCAT
CAGTATAATAGAATAAGAAATCATAGCATGGATCTCCAGGCTACCTCAAA
AGGTGACTTTCTTTGCCAATAACTTTTGATAGAATTGTTCCTCTAATTTC
CCCTTTTCAGTAGCTCTTCCTCTATCTTTTATGCTTCATAAAAACCAAAA
ACATTGCCCTAAAAGCTTAGCCTCACGAAGCCCCAGCTAATAATATAACA
CCCTGGTTATATCTTTGTATTCTTATCCTAAATATAACAGAACGGCCATT
CTACGGAAATTGCTGTCACATGACTTTTTTCTACTGCGTGATACAAATCG
CGCATTTTCATTGGATGTTGAAAATTTATTTGTTACGTCACAAGAAGTTC
CGACTTCACATTTTTAAAAAACTAAATGACGAAAGGACGTTTTTTTATGT
TTATGATTATTGAAAGAATTCAGGTGATTTTAAGGTTTAAATTATTTCTT
TTTCTTTTGCCATGTGTACTAAAAGATTCTACAATGTTTGGGGAACTCAA
ATATCCAAAAGTTTTTCTATTTTTCATGGAAAAATGAGCAGCTATAAAGG
CAATTTCTTTGCTTAGGGTTTATTTTTTCTTTGTGAATTTTCATTTTCAA
TCTTTCTTTAAAGATTTAATATTTTATCAATTATCTTTGGATTTTCAGGA
TTTATTCTAGAACTATTTGGGAGTAGAGAGCTTTTTACAGATCTTAAAAA
GGTTTACTAATTCTTTAGATATAGTCAAAAGATTAGACATTGGTAAAACT
TATTTCTCCGATCAAACATTGACACACGCACTTCCAAATTAGACACGCAT
GACTGAAGCACCAGATGCGAAATGGTTGGTGTAAAAAAGATTGACTATAA
AACTGCTTTATTAAATTGAATCAGAAGTCCTTTCAATTAGTCCCTGCATG
CGCCACCATGGATGTAGGACTTGGAATTCTGTAGAATGGTCATTCCTTTA
TATTTACAGGAAGAGAATCAACCAGGGGGTTATATTATAAGCTGGGGATT
AGTGAGACTAAGCTTTTAGGGCAATATTTTTAGTTTCTCTGATACCCAGA
CGTTACTAATCGATAATTGATTGATTGATTAAGTATTGATTAAAAACGAT
AGCTAATCAATACTCACAATTTTTTAGCACTCAATTAAATTATCACCATA
GATTTTTAATCGATAATATCATCTTTTTTTATTGAAGCCAAGAAGTGCCA
TCAACAAAAAAATATTTAATTGTAGAAAAAAATATTTAATTCAAGAAAAA
TAAATTTTGAATTTAGAAAAAAATAAAAAGGGTTTATTATGTAGATAAAT
TTTTTTGTTACCGAAATCTAACGCAACCGTTACCTACCTATTTTATTTAT
GCAAAAAATCAGGTATTCAATATTGAGCAAATCCTGAAAAAACACATTTT
TTTGGGCCGTTTTTGGCCAAATTTGCCCAAACAAATTTTTTTTCTTCAAA
ATTCGGTTCTGTCAACTTGAATTGTTTGTGGATTTAAAATAGACAATCCT
ATCGTCTACACAAGATCACTAACAAAGGGAATAGTTTAGGAGAGGCATGG
TAAATTCGGGTGGAGTAAGCAGTGGCTGGGAGATGTTCACAGTGTAGACA
ATACCGATTTGGCGAAAAAGAAAAAAACTGAAAAAAGCTGTGGATTTGTC
TTTGCGTATTATCACCGATTTGGTTCGACCATTTTCAAATCATTCGAAAC
GAAAAAAAAACAGACAGAACTCTTTATTTTTCGAAACTGGCTGCAAGAAT
CTCCTTGCATGAAATTCTTTATTTTAGGTATTTTTTGTATTTCTAATTTA
GAATGTTAGTTTTGTAATTTACTTCCTTTTGTTCCAAAACTCTACCGCCA
CTTTTTTTCCGTAAACCGCCTTGACGCCCCAACTCTTTCCCGCGATTACT
CATTACTAACCTCTAAACGAACGATAGCATCGTCTTAGGATTGACATCTA
TGTGCAAAAAATCATCTGGTCTGCACAAAGTCACAAATCCAGGAAGCATG
AAAACGAAAGTTGCAAGTGTGCACGGAGGAATCAGGCCAAAAAGTTTTTC
TATTTTAGTATTTTTTTTCAGACGGTGGACTTTGTGTAAGCATGCACAGA
ATCGGGCAAAAAAAATTCTCTGTTTTCTCTCTTTTCTCCAAAAAAAAAGT
TTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTTTGTCCGTTC
GTCTGTTCGTTCGTTCGTTCGTTTGTTATTAGCTTTCCTCATGATTGGCT
CGTTACTTTTTTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTC
GAATGTGACGGAGCCCGATTTTCAAAAAAAAAATTTTTGGGCAAATTTGG
GCCAAAAAACGGCTAAAAAACGGGTTTTTTGGACTTTGTGAAAAATTAGG
TCATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCGTAGGT
AAAAGATGGCTTAAGCGAATTTTTGCAAAAAAATTATATTGGCTCAAAAA
ACGCATGTTTGTCTATAAGAATCACTATTAATAAGCATCCATCAATGTTC
TTAGTCAAATTACTCAATTTTTTATGAGATTTTTGCTCGGGAGGGCTTAC
TTTTAAAGAATATGTGTGTTTCGATATGAAATTTTGGTTGCATGGCGTGT
TTTTATAAAATAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATC
AATTACTTAGGTATTAGCTTTTCTCGAGATGGCTCTTTTATTCTTTATGA
TTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCCC
GACTTTCAAAAGAAAATTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAA
AATGGTTCTTTTGGACTTTGTGAAAAACTGGATCATTAGTTTTTTCTGAT
TTTTTTCTGATTTTTTGCAGGAAAGTAAGGTACCATCATAGGTAAAATAC
GGTTCAAGCAGATTTTTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTGGCTCAAAAAACGCATGTTTATCTATAAGA
ATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCATTTT
TTTATGAGATAGATGTTTCTTTTGCTCAGGAGGGCTTACTTTTAAAGAAT
ATATGCGTTTGAACATGAAATTTTAGTTGCTTGGCTTGTTTTTATAGAAA
AGCTGGCCAAATTCGATATTTTTTTATAAGCACACTATCAATTACTTAGG
TATTAGCTTTTCTTGAGATTGGCTCTTTTATTCTTTATGATTTTTTGCAC
AAAGATGCATAACTATAAACGCTCGAATGTGACGGAGCTCGATTCTTGGA
AAAAAAATTTTGGCGTAAATTTCAGCTAAAAAGAGAGATGTTTTTTTGCT
CTCGAAGTCTTGAATATGAAAGAATATTCCAAGAGCATGAAATTTTGGTT
TCTAAACGTGTTTTTTTTATAAGTAACAAACGACTAATTTTAATAGATCG
TCACTATTTGTGTTCTGAATGATTGTTTAATGGTCATGCTTATGTAGATA
TCAATTATAATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTAT
CACTTGTTCCTATGTAAAATTGATTTGTTTTTCTAAAATTAATTTTTCCT
CTAAATTGATATTATTTCTAAATTTAATTTTTCTTACTGAAATTAAATAT
TTTTTTCTCGGCTTCCACAATAAAGATAGTATCCTGTAAAAAAGATAGTA
TTGTTTCAATTAAGATAAAGTTTTTTTTGGGAAAATAGTGCCACGAAATG
AAAGGTCGCGAAATGAAAGGTAGTTTCGCAAAATGAAAGATATTGTCGTG
AATGAAAGATAGTATTTATTTCTACTTTGGCGCGCCATAGTTTTCACATG
GACAGGATATNTGTACGATATTTTGTTAACCAATCAAAATATCGTACGAT
ACTTTTCTTTCAACCAATAGAAATTTTTGTTTACATCAGGGCGATTACAA
AAAAGCAGGGCTATTACGGATTTATCGCCCCGCTCGTCCTTTACAAATCT
AAGCTAAATGTAATCAACCATATAATTAGACCCCCAAACAGAACCCCCCC
CTAGGCCGAATAGGGTTAAAGGGAGCGATAACATGCTTATCACTGTCTGA
ATGAGTGGCTAGCATGTAATTACATCCTTTAAATCAATCTGTTATTTATA
AAAAAACTTTATTTGCTTCCAACTGTTTCATTGAATTTTTAAATTTTCTT
ACTCAAAATTTATTATCACCCTGTTTTTAAGGAAAATTTTGCATAAATTT
CAATCAAAAATGCCTTAAATAAAGGGTTTTAATGGCTGTATAAACTTTGT
TCATCACGAAATAAACTAAAACATCAGTTTTACCAGTAGTTCTCAACTTC
AGTTGAGCTAGAATCCTGAGAATGTCTGTATGTCTGTCTGTCACCTCAAA
TTTTTTGGGCCGGCTGGAGACTCCAGAAACAGTGGGATTTGTCTGAAATT
TTGCACACTTGTTCCTTGGGTGAATATCTGGGGGGTGTTTTTTCATATTT
TGAAAAGTTTGATTTTTTGGGATTGGGGATGAGCTTTTGGCCAACAAGGC
TAAAGCTACTTAGAGAAAAGTTATCTTATATCAAAAGTTTTCTGTTGAGC
CAGTTAGGTTAGTACATTTGACAGTGTAACAATCACCTTTGTTAATTAAT
GACTGAAGCAGACCTCTGGAAAGCTCTTTTCAGCTTAGCCCTTTGATCCC
ACAGATTTCACCACTGATATTCTAGAGCCAATAATTTGAATTTCTGTTAC
ACCTTTTTCTAGTTACCATCACTCTGAAAGGACGATCCATCTCCGTCACC
GGACCTCGTGGTACCCTTCACCGTAACTTTAACCACTTGAACTTGGAATT
GACCCGAGTTAACAAGACAACTATCAGAGTTGACGTATGGTTTGCTTTGA
GAAAACAGTTGGCTTGTCTCAGAACCATTTGCTCTCACATTGAAAACTTA
ATGAAAGGTGTTCAATATGTAAGTTATTTTTTATTGCACTGATTTTAAAT
TTCTTTGATCTGTAGTATGACTGAGGAATTTTTCTCCTTTCTGCTTACTT
TCTTGTCCACTATCTGCTCTAATTCAAACATAATTTTTGAAATAATTTAA
AGGGTTACCAGCTCTTTCATATTCAAGTTTTAATTTTTCTGATTTTGATT
ATTAATTTCTAAGCCGTTTTGCCTACCAAGTGTATATATTTTTGCGGGTA
CACATTTTTTTCCGAGAAACATGTTTTGTGTGTATTGACATTCCAATTCA
CTAAATCAGGGTGTCTACGGGACCTTGAAAACCTTGAAAATGAACCACCC
AACCTTGAAAACCTTGAAATCTATCAATTTTTTTNAGGGTGTCTACGGGA
CCTTGAAAACCTTGAAAATGAACCACCCAACCTTGAAAACCTTGAATCAA
TTTTTTGGGAAAAACCTTGAAAACCTTGAGAAATCGTTAAAAACCTTGAA
AAGTAGTTCTTCATATTCATTCTTTTTATCATACAAGCTTTTTAATAGGG
CAGTGGCTGAGTTTAGGTTTTTCTCTAGAATTGCGAATTGAGGTATCTCA
ATCCCTCTACTAGCCTTTACAATGAACTAGGTTTTTTCATCTTTTCTATC
AATTGTCTGCTAGGAGGATCTTACAAAACTGATCTGAGAGCAGGGATCTT
ATTTTGGCCCGGTGAATGGCAAATTTCGGCAGCCTAAAGACTCACTCTAA
AGACTCTAAACAAATTAAATGCCCTGGTCTTGAAAATCTATTCGCCGGTC
GATGAAATTTAGCAGCTAACTTATTTCTATCCATTCATTCAAAAAGTAAG
AATAAATACGTTCCTAAACTGTTTGTCATGGGGAAATTTCCAAAAATCGT
CTGCGGTGTTAAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGTAGGGGGAATTTT
GTTCGATTTTTTGGAATCGCTTGACTGTTTTGTTAGAAGCACTTGTTATA
CATTTTTGGAAAGCTAAGGGGTATGGGAATCGAAATTACTATGTTTCCAA
ACAAATATGACGGTCTCAGGCAAAAATCATAGGGTTAAAAATTAATGAAA
ATTTTAGCTTGAGAAAACGGAGACCTGTTGTATATTTTCGGAAAGCTCTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAAAAAAATTGGAAA
CATAGTAATTTCGATTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACA
AGTGCTTTTAACAAAACAGTCGAGCGATTTTACAAAATGCTCTCTACTAA
GGGCCATTATTTCATTCATATTATGTCACGTTACGCTATTTATGAACTGG
ATACCCAAAGTATTCTGGTTGACGTCTTGGAAAAATGGCCGTTTATCCTT
AACATTTCAAGCATCGAAAATAATTTACTTAAAACAACACTTTTGGCAAA
AGCAATCAGAAACAGGACGTTTTTAGCCATTTGAAAGATTCAAAATCAAA
ATTTTCTCTTGTTAGCGCAAACCATGGTTGCACCTCCTAGGTCACTGTAA
ACATTTGGTTTTTACTTCTAATTCTTTATTTCAACAGTTGAAGACTAGGT
AGCTGGAGTAAAAATGTGGTATATATCGTTCTCGAGAGGGAGATAGGAAT
TTAACAGTGGAAATAATTCGCCGGTTGCTAAAAGCCAATAAATTTTTATT
TGCCGTCTTCTATTTTACTTTCGCCTAGTACCACTCTGAAAAAAAACCCT
GTAGAGATATGTCAACTGAATATAAAAAAACCTTGAAAAGTGCAAAATCT
TTAGCCAAAAAACCTTGAAAAACCACTTAAAAAGGACCAAAAAACCTTGA
GAACCTTGAAAATCCAGAGAAAAAAATCCGTAGACACCCTGTAAATGAAT
TCACTTTTTTAAGAAAAGAGTTGTAACAAAAAAAGACTGATTTTGCTTTA
ACACGACCATATCGTGTGTAAAAATCACTGATCATTAAAAAATTCATTCT
CTTAAACTTTAGTGTCTGTCAAAAGATATACAATTTTCCATGAAACTTCG
GAAGCGCAACAGACCCTCTATGGCAAATTTTGAAATTTCTACTCACAAAC
AAACTTGCATCCTTTGTTAATAGTAAAGTAGCTATGAATAAAATCTTTAA
ACTTCAATGTCTTCTAACAGGGATTCAGATACAAAATGAGATGTGTATAT
GCTCATTTCCCCATCAACTTGAACATCCAAGAAGACGGTAAACGAATCGA
AGTACGTAACTATATTGGACAAAAGTATATCCGTGTTGTCAACATGAGAG
ATGGAGTCATTGTCAGACCATCAGGAAACAAAGACGAAATTTGCATTGAA
GGAAACGATATCGAGTCAGTCTCAAACTCAGGTAAGGTTAAATTTTTTAT
AGATTCATTAATTAAGTTTTCTAATATTCTTTTCTGTTTATCTTTGGCTC
TTCTTGAAAAAAACCTACATTGGGTTGGGGATGAAACATTTTTCAATTGA
ACATCAAAACACTATTTGACATCGAGAAAGAAGGATTTTTGGGGAATGGC
ATGATATACTATTTTTTGGTTATGAACAATATCTCTTTCTTTCAGCTGCT
CTTATCAACCAATGTGCCAAAGCAAGGAATAAGGATATCCGTAAATTCTT
GGATGGAATCTATGTGTCTGAAAAGACTACTATTGATCCTATTGAAGAAT
AAAAAATAAATTGTAAATGGAGGAAATATTAATCTTGACCGTTTTTCGTA
CCCCCCTCCCAAAGTGAATCGACGAAAAAGAAGATTTTGAAGGTAGTTTG
CAGTTTCCCATTGTAGATCCTCTCTTCTGATAAAGTCGTGGTGTTAAGCG
TGTTTGGGCGTACAAAAATTCTTTTTTCGAAAAAAATATTTTTCCTGCTC
ACAATTTTCATAATTTTGGGTCAATTTTAAACTAGAGTCTACTTTAGCTG
ATGATAATTTTCGATGGCGCCCAGTCATCAGTGAAGTCAAGTAAATCGGT
AAAATTACGACGACGAACGAAAATTTAAC

Coding sequence (CDS) from alignment at sc0002323:10879..21607-

>TCONS_00040137 ID=TCONS_00040137|Name=TCONS_00040137|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0002323:10879..21607- (Clytia hemisphaerica)
CTGCTCTTATCAACCAATGTGCCAAAGCAAGGAATAAGGATATCCGTAAA
TTCTTGGATGGAATCTATGTGTCTGAAAAGACTACTATTGATCCTATTGA
AGAATAAGGATTCAGATACAAAATGAGATGTGTATATGCTCATTTCCCCA
TCAACTTGAACATCCAAGAAGACGGTAAACGAATCGAAGTACGTAACTAT
ATTGGACAAAAGTATATCCGTGTTGTCAACATGAGAGATGGAGTCATTGT
CAGACCATCAGGAAACAAAGACGAAATTTGCATTGAAGGAAACGATATCG
AGTCAGTCTCAAACTCAGTTACCATCACTCTGAAAGGACGATCCATCTCC
GTCACCGGACCTCGTGGTACCCTTCACCGTAACTTTAACCACTTGAACTT
GGAATTGACCCGAGTTAACAAGACAACTATCAGAGTTGACGTATGGTTTG
CTTTGAGAAAACAGTTGGCTTGTCTCAGAACCATTTGCTCTCACATTGAA
AACTTAATGAAAGGTGTTCAATATATGAAGACTTTCTTGGCAACTCGATC
TGTAACTATTCCTGAAGCAGCTGCTCTTATCAACCAATGTGCCAAAGCAA
GGAATAAGGATATCCGTAAATTCTTGGATGGAATCTATGTGTCTGAAAAG
ACTACTATTGATCCTATTGAAGAATAAGGATTCAGATACAAAATGAGATG
TGTATATGCTCATTTCCCCATCAACTTGAACATCCAAGAAGACGGTAAAC
GAATCGAAGTACGTAACTATATTGGACAAAAGTATATCCGTGTTGTCAAC
ATGAGAGATGGAGTCATTGTCAGACCATCAGGAAACAAAGACGAAATTTG
CATTGAAGGAAACGATATCGAGTCAGTCTCAAACTCAGTTACCATCACTC
TGAAAGGACGATCCATCTCCGTCACCGGACCTCGTGGTACCCTTCACCGT
AACTTTAACCACTTGAACTTGGAATTGACCCGAGTTAACAAGACAACTAT
CAGAGTTGACGTATGGTTTGCTTTGAGAAAACAGTTGGCTTGTCTCAGAA
CCATTTGCTCTCACATTGAAAACTTAATGAAAGGTGTTCAATATATGAAG
ACTTTCTTGGCAACTCGATCTGTAACTATTCCTGAAGCAGCTGCTCTTAT
CAACCAATGTGCCAAAGCAAGGAATAAGGATATCCGTAAATTCTTGGATG
GAATCTATGTGTCTGAAAAGACTACTATTGATCCTATTGAAGAATAAGGA
TTCAGATACAAAATGAGATGTGTATATGCTCATTTCCCCATCAACTTGAA
CATCCAAGAAGACGGTAAACGAATCGAAGTACGTAACTATATTGGACAAA
AGTATATCCGTGTTGTCAACATGAGAGATGGAGTCATTGTCAGACCATCA
GGAAACAAAGACGAAATTTGCATTGAAGGAAACGATATCGAGTCAGTCTC
AAACTCAGTTACCATCACTCTGAAAGGACGATCCATCTCCGTCACCGGAC
CTCGTGGTACCCTTCACCGTAACTTTAACCACTTGAACTTGGAATTGACC
CGAGTTAACAAGACAACTATCAGAGTTGACGTATGGTTTGCTTTGAGAAA
ACAGTTGGCTTGTCTCAGAACCATTTGCTCTCACATTGAAAACTTAATGA
AAGGTGTTCAATATATGAAGACTTTCTTGGCAACTCGATCTGTAACTATT
CCTGAAGCAGCTGCTCTTATCAACCAATGTGCCAAAGCAAGGAATAAGGA
TATCCGTAAATTCTTGGATGGAATCTATGTGTCTGAAAAGACTACTATTG
ATCCTATTGAAGAATAAGGATTCAGATACAAAATGAGATGTGTATATGCT
CATTTCCCCATCAACTTGAACATCCAAGAAGACGGTAAACGAATCGAAGT
ACGTAACTATATTGGACAAAAGTATATCCGTGTTGTCAACATGAGAGATG
GAGTCATTGTCAGACCATCAGGAAACAAAGACGAAATTTGCATTGAAGGA
AACGATATCGAGTCAGTCTCAAACTCAGTTACCATCACTCTGAAAGGACG
ATCCATCTCCGTCACCGGACCTCGTGGTACCCTTCACCGTAACTTTAACC
ACTTGAACTTGGAATTGACCCGAGTTAACAAGACAACTATCAGAGTTGAC
GTATGGTTTGCTTTGAGAAAACAGTTGGCTTGTCTCAGAACCATTTGCTC
TCACATTGAAAACTTAATGAAAGGTGTTCAATATATGAAGACTTTCTTGG
CAACTCGATCTGTAACTATTCCTGAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024345XLOC_024345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040137-exon-sc0002323-1575043694:21425..21607TCONS_00040137-exon-sc0002323-1575043694:21425..21607Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1575043694:21213..21267TCONS_00040137-exon-sc0002323-1575043694:21213..21267Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1575043694:14590..14795TCONS_00040137-exon-sc0002323-1575043694:14590..14795Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1575043694:11527..11737TCONS_00040137-exon-sc0002323-1575043694:11527..11737Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1575043694:10879..11312TCONS_00040137-exon-sc0002323-1575043694:10879..11312Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1510915933:21425..21607TCONS_00040137-exon-sc0002323-1510915933:21425..21607Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1510915933:21213..21267TCONS_00040137-exon-sc0002323-1510915933:21213..21267Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1510915933:14590..14795TCONS_00040137-exon-sc0002323-1510915933:14590..14795Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1510915933:11527..11737TCONS_00040137-exon-sc0002323-1510915933:11527..11737Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1510915933:10879..11312TCONS_00040137-exon-sc0002323-1510915933:10879..11312Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1491911889:21425..21607TCONS_00040137-exon-sc0002323-1491911889:21425..21607Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1491911889:21213..21267TCONS_00040137-exon-sc0002323-1491911889:21213..21267Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1491911889:14590..14795TCONS_00040137-exon-sc0002323-1491911889:14590..14795Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1491911889:11527..11737TCONS_00040137-exon-sc0002323-1491911889:11527..11737Clytia hemisphaericaexon
TCONS_00040137-exon-sc0002323-1491911889:10879..11312TCONS_00040137-exon-sc0002323-1491911889:10879..11312Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040137-proteinTCONS_00040137-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002323supercontigsc0002323:10879..21607 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1221.81	1231.36	1278.4	1281.62	862.927	693.066	1104.9	1151.88	1832.65	1615.8	1882.55	2336.03	2561.95	2390.68	2406.21	2429.2	2363.59	2643.25	1353.06	1557.91	2658.28	2421.05	1950.65	1842.56	1570.86	1729.78	2636.45	2546.84	1604.37	1665.09
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000702Ribosomal_L6
IPR020040Ribosomal_L6_a/b-dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00040137 vs. Swiss-Prot (Human)
Match: RL9 (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.120e-77
Identity = 117/192 (60.94%), Postives = 147/192 (76.56%), Query Frame = 1 
Query:  193 MKTFLATRSVTIPEAVTITLKGRSISVTGPRGTLHRNFNHLNLELTRVNKTT--IRVDVWFALRKQLACLRTICSHIENLMKGVQYGFRYKMRCVYAHFPINLNIQEDGKRIEVRNYIGQKYIRVVNMRDGVIVRPS-GNKDEICIEGNDIESVSNSAALINQCAKARNKDIRKFLDGIYVSEKTTIDPIEE 759
            MKT L+ ++V IPE V ITLKGR++ V GPRGTL R+FNH+N+EL+ + K    +RVD W+  RK+LA +RTICSH++N++KGV  GFRYKMR VYAHFPIN+ IQE+G  +E+RN++G+KYIR V MR GV    S   KDE+ +EGNDIE VSNSAALI Q    +NKDIRKFLDGIYVSEK T+   +E
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE 192
The following BLAST results are available for this feature:
BLAST of TCONS_00040137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL91.120e-7760.9460S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]
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