TCONS_00040137-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040137-protein
Unique NameTCONS_00040137-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length189

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040137-protein ID=TCONS_00040137-protein|Name=TCONS_00040137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MKTFLATRSVTIPEAVTITLKGRSISVTGPRGTLHRNFNHLNLELTRVNK
TTIRVDVWFALRKQLACLRTICSHIENLMKGVQYGFRYKMRCVYAHFPIN
LNIQEDGKRIEVRNYIGQKYIRVVNMRDGVIVRPSGNKDEICIEGNDIES
VSNSAALINQCAKARNKDIRKFLDGIYVSEKTTIDPIEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024345XLOC_024345Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040137TCONS_00040137Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000702Ribosomal_L6
IPR020040Ribosomal_L6_a/b-dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000702Ribosomal protein L6PIRSFPIRSF002162RPL6p_RPL6a_RPL9e_RPL9ocoord: 1..184
e-value: 3.1E-35
score: 119.2
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 12..85
e-value: 1.9E-13
score: 50.8
coord: 97..175
e-value: 2.5E-10
score: 40.8
IPR020040Ribosomal protein L6, alpha-beta domainGENE3D3.90.930.12coord: 6..88
e-value: 9.9E-24
score: 83.2
IPR020040Ribosomal protein L6, alpha-beta domainGENE3D3.90.930.12coord: 89..185
e-value: 1.9E-43
score: 146.2
IPR020040Ribosomal protein L6, alpha-beta domainSUPERFAMILY56053Ribosomal protein L6coord: 86..181
IPR020040Ribosomal protein L6, alpha-beta domainSUPERFAMILY56053Ribosomal protein L6coord: 1..85

Blast
[Close]
BLAST of TCONS_00040137-protein vs. Swiss-Prot (Human)
Match: RL9 (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.342e-82
Identity = 117/192 (60.94%), Postives = 147/192 (76.56%), Query Frame = 0 
Query:    1 MKTFLATRSVTIPEAVTITLKGRSISVTGPRGTLHRNFNHLNLELTRVNKTT--IRVDVWFALRKQLACLRTICSHIENLMKGVQYGFRYKMRCVYAHFPINLNIQEDGKRIEVRNYIGQKYIRVVNMRDGVIVRPS-GNKDEICIEGNDIESVSNSAALINQCAKARNKDIRKFLDGIYVSEKTTIDPIEE 189
            MKT L+ ++V IPE V ITLKGR++ V GPRGTL R+FNH+N+EL+ + K    +RVD W+  RK+LA +RTICSH++N++KGV  GFRYKMR VYAHFPIN+ IQE+G  +E+RN++G+KYIR V MR GV    S   KDE+ +EGNDIE VSNSAALI Q    +NKDIRKFLDGIYVSEK T+   +E
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE 192
The following BLAST results are available for this feature:
BLAST of TCONS_00040137-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL97.342e-8260.9460S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]
back to top