TCONS_00040132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040132
Unique NameTCONS_00040132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040132 ID=TCONS_00040132|Name=TCONS_00040132|organism=Clytia hemisphaerica|type=transcript|length=512bp
GACAAGAATGCCGACACCGACTTTTCCAACAACGGACAACCAAATGGTGA
CGTCGCCGACACAAGGTACCATGTCTCTTGACCGAAATGTCGGACGGCAA
GTGGGTAGCCAAGTTAAAAGCAAAGACTCAAATGAGAAGCTAAGgTCGGA
AAGTCTCACAGAAGAAGAGaaaTTAAATAACATTGCAGCACGCAAAGAAc
aattgttaaaaaataaagaagaaataaTCAAGTCTAGACAACGCTTAGAA
CTCATTAAATCCAAAACTTCACAACGAGATAATAATATGCTGTCTCCTGG
TGATAAACCAGAGCTGTCCTCGCCGAATTCAACGAGCAGTCATACTTCGT
CAGATTCAAACCAAGCTGGTGAGGTTGTATTCGAAGGCATTGCAAAACGT
GGATCCTTGAAACAAAGGAATAataaaatattaaaagacgGCGCTTCTAA
TTACACAATGAGGCGCTTCTACGACGTCGCTAAAGAAGAATTCGAAAAGC
TAGAAAAATTAA
Run BLAST on NCBI

transcript from alignment at sc0002320:9339..14653+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040132 ID=TCONS_00040132|Name=TCONS_00040132|organism=Clytia hemisphaerica|type=transcript|length=5315bp|location=Sequence derived from alignment at sc0002320:9339..14653+ (Clytia hemisphaerica)
GACAAGAATGCCGACACCGACTTTTCCAACAACGGACAACCAAATGGTGA
CGTCGCCGACACAAGGTACCATGTCTCTTGACCGAAATGTCGGACGGCAA
GTGGGTAGCCAAGTTAAAAGCAAAGACTCAAATGAGAAGCTAAGGTATGA
ACATTTTTCTGTGATAGACAATAAAGAAATCTATTACAGTGACAGTGAGG
AAGGTATTTGCTTAtcaaaagttttgagaaaaggTTTGTCCTAAAAGGGT
TAGGGGGCCTTAAAAGTAAAGTACACTACTTCTTCCGGCACAGACTTAAA
ACTCTCTTTCAAACTTTTGTAGCACTTAACAGTTAAGAGCTGAGTTATGG
TATATAAAAGTTTAATCCAATCTTctattctttgttgtttgtttgtAATA
TTTTAGTAGAAAGAATAGTTTGATGCGAAGAATGTCATCCTTCTTTGGAA
GAAACAAGAGGTAAATCAATGAgaagtttgtttactttataaattTACCA
CTTAGCTAGTATGTATCTTTGTATCAGCAGAGTTTAGGTTGCAGCTTTTG
TTCTCAGTTTAGAAGTACATGTGAAACagtaaattttaacttttttttct
agATTGTCAGGCTTAATGCTTCCTTTATTCACTTATTCGCTTAAAATGAG
ATCAAATTCAGCATTGGGCTTTTTCTAAAATCTAAAGCTGGGGTGCTGCT
TAATTTATCATTAAGCCAAAATTGAATGTCGTGTTCTTATGAAACAAGCA
TGTATAGGCTTTCAGCAGAAACATTTTAAATCATGAATATAACTGAtatt
ctttttcataattttgttgttttcaggTCGGAAAGTCTCACAGAAGAAGA
GGTTTGCTATGCTTATAATGTTCATATTCTTTCCCACTATATATTTTtct
gttcttctttttttttcttttaacttcTAATGACATTAATTCTAAACCGT
TGAATAACTAAGAATAACCGGAACTAAACCTTACTAACTAAAATCTTACT
AGTTGTAATTCACATATACTAATCGAAATTTATTAACTGTCAATTCAAAC
ACACTACTACTAAAACCAAAAATCGTTACAGTTGCCTCgctctaattcga
atttctattattcaaatttaTCTGTAATTTGAGCTAAAACATTGGTCCCC
TTTCGCAGTTGAAAAGTAGTGTAAAATACTGTAATTCGACTATTTCTATA
ACTCAAAGAAACGTCTTGCTTTaagatcgaataagagagagagagtcaac
tgtacgcAATTAATGTTTTTCGGTCTCACTGAAACCCTATAGTTGCCGAA
ATAAAATAAGTGAAAACATAGGGTAAACTTGTAAACCTACTCTTTTTTAG
ACATCACTGGGTGTTTACAAACGCTAATATAAACTAACCTGCTTGCTAAC
CAAAATATTCATCGACTAGAaatacattttcaaatttaactcTAACTAAC
AAATCATACCTCCAAAAGaagtcaaaattttaaaatgttaaattcttttt
ccagaaaTTAAATAACATTGCAGCACGCAAAGAAcaattgttaaaaaata
aagaagaaataaTCAAGTCTAGACAACGCTTAGAACTCATTAAATCCAAA
ACTTCACAACGAGATAATAATATGCTGGTGAGTTTAAGCATAACCATAAC
TTTCAAATTCAAGAAAGCTTTCCCTATTGGTGCATATGAAAGTGGCATCT
CCAGAGAGTCATGTGTGTAAAAATCTCTTTCTCAAAATGCCTTGTCTTAC
GAAAGACCAGAGAGTTTGAGTTTATCTCGAGTATGCCAGAATTAATAATA
CTTTCCCAACGGAtaaattttcttcataaaaaattgtGTCAGTAATTTGC
GCCACCTGACCCTTTAACTGTATCACTTTTCTGCTCGTTTCCTTTAAAAA
ATGTAGATAAAAACGATCCGCCATCTTTTTAAAAAANAGTTTAAGCATAA
CCATAACTTTCAAATTCAAGAAGGCCGTCCCTATTGGTGCATATGAAAGT
GACATCTCCAGAGAGTCATGTGTGTAAAAATCTCTATCTCTTCATCAAAA
TGCCTTGTCTTACGAAAGACCAGAGAGTTTGAGTTTGTCTTGAGTATGCC
AGAATTAATAATATTTCCCCCAACGGATAAATTTTCTTCTTAAGAAATTG
TGTCAGTAATTTCGCCACCAATTTCGCCACCTGGCCCTTTAACTGTATTA
CTTTCCTGCTCGTTTCTTTTAGGAAGTGTAAATAAAAACTTTCCGTCATC
TTTTGAAAAACCAGTGTATTGTTAGGGTTAAAGGTCGTAGAGGCAGAGAC
ATAGCGAAAAACTCTTTTGGCAGAACTGTGTCATCCGACCCCGCGTTTAA
CATCTGAACCTTGATCCTCTTGGTATAGTCTTGGAAACAATTTGCAACAA
ATCTGATGAGATTATTTTGAAAGTGTTTTTATTGCGATTGAGTTGGACGC
AGTCTCACATATTTATAAATGTTCTCATTCATATATAAATTCTTTCTTCT
AGTCTCCTGGTGATAAACCAGAGCTGTCCTCGCCGGtaagaaataaatca
ttttttggcttttttcacaTATTGCTCTTTCGGAATTTTTTGGCTGGTAA
AAAAGATTCTATCCTGCTCTCAGAGCTACTTATGCTAGAGCGAGGAATTT
GAAGCTTTAACGTTGAGGcataattttcaaattcttaTACCTGGAcctaa
ttttaaaatgtttacttGAAGTTAAGTTCAACTGTCATCTGTCTGGTAAA
AGAAACTGAGCTCAATATAGAACTCCATTGTTGTATTGTAAGTATGTGTC
AAAGAAAGTCATTTTCGAGTCACCCGGTATAACTATTGTAGACTGGTTCC
TTTTATCACAAAATGATAAAGTGATTCGAGGTACTAATACTTTTTATCGT
TTCCCGTTTGTTTTAGAATTCAACGAGCAGTCATACTTCGTCAGATTCAA
ACCAAGCTGGTGTAAGTATTTTTATAAAACTCTTCAATGATTGCCTTTCC
ATTATTAAAACTGTCTGATAATTGGATGGGTCACaggcaagaaacaacaa
aatttaatttatttattaataAATTTTCTCTCTACTCTATGGTAGAGCAT
CTTCAGATCTTTCATAACTATTTGTAAATGCTAGATGTCATATGATAGGT
TTTTTATGAGTGTTATGATAGATCTGAAGATGCTCTACCATAGAGTAGag
agaaaatttatcaataaataaattttttgtcgTTTCTTGCCTGTGACCTA
TCCAAATATTACAGTTTTAATAAGTCTTTTTGTCTTTAAGTCTTTTTGTC
TTTGCAACACTTAGTATGTTTTCCCTTTTGAGTTAAATGAGAAAATTATG
TGCCATTATCTCCAATCGCGAAATAAGGTTGTAAGACCATGCGTTTTTAC
ACTTCGTTAAAGGGTTTGGGGACGAGTATATCAGGTTCGTTAGTGACGTA
GAATTTCTGAACCTTTCGCTATTCGTCCCTTTCAAACCCAAATGCGATTC
TCCCcaataaactttttcaaatttgaaaaaattttcattgaaaatctaAA
AGCTATGACATTTTGAAATATGAGATTAAAAAAAGGTAATTGTCGTTTCT
CAGGATAACCAAGGTTCATGAATTTAACCACTCGGTCAAAAgtataaatt
tgaaatattatttgcAATTATTTGGTTGCAAAACGCAGGTTATATATTCA
AACTTGAACGCGTTTTATGAAATGATGTAGAAAACCTACATCGCTtccaa
agtttcaaacactaaATAAACGCATACATATgagtctagtattcctttta
tTTATCTTGTCCTTTAATTTCTTCCGTAGGAGGTTGTATTCGAAGGCATT
GCAAAACGTGGATCCTTGAAACAAAGGAATAGTAAGTTTTTCTTTAGTTG
AGTGTCTTATTTCAAAGCTCTTGAATTTCGCGAATGACAGAGAAGGAATC
TTTATCCTATTAAAAGTAGTAAGGGTTTATCCAATAAATTTAGTTACCGC
GAGATTTAATTCCTTTAAAATTTGCAGAAAATTTCTCAAGTATTGGTATG
TATAACATGTATAGATTTAGGGGAGTGTACAGCGTCATTAGTCTTTTTTC
AACCTTCTATTTCTACATTCTTTGATGACCAGATTTTATATGAGATTTTA
TGAAGATAAAAGATATACTTCAGTTTTTGTACTGTGTTTGGAAGGTCTTT
TTGAGGTCTAAGGCATAGTGACCATTCAAAAGGTATGTACGTTCTgagag
ggggagggggtctatCGAAAAGCGTACGAAAACGTACGTGGGGAGAGGAA
GGGTCAATCAAAAAGTGTACGTatgctttaaatttttttcaaactgcttT
TACAAGTAATTTGTGTAacgttttatttgaaaaaaactaaactaagtTTT
AAGTCTCCTTTTTCCATTTTAAAAATATCTGGAAGACGTTTTCGCACACG
CGGGGATACGTACGTACTTGGAGGGGGAGCGTACAAAGGGAAAGGGTAGt
cgaattttgtctaaatttgaGAGTACGTATTAGTTTATGAATGGTCCCAT
AGTAGCTaaaattttacaattgatttgaatgatttatttttgtagcTGAA
AGTTGTATAAGGCATTGGCGAGCCTCGACCCCTAAGCATGAAAAGAAGTT
CGGAACAGTTCCTAAATAGTAAATAAAGTGAATATTTTAGTATCGaagta
tttttttagaaaatttcgtAAGTCGCTTGACCAGCATTGCTAATTTATCT
GAAATCGAGTCCTAACAAAGTTATATCTCACACCAGTCCCAACTGCATCA
GTGGCTTTCAATAAAAAGACTTGCGGTAATCAGCGTTGTTGAAGTTTTTA
ATTAGATCATTAGCAACTCCTTAGTCATAATTTAGGCTATAACTCACTTT
AATAGTTTGTAAATAagtatttattgttttttatacaaaatataaaaatg
tgaataaagatcttgcttCCTGGCAATTGTGTTTTGTTCTGCCTTATATT
TAGGTCTTAGCTGGAATCGCCTTGCTTTCAGTTTTTGTCttgtcttgttt
tttttttagaatagaaGGTAGATTGTTTTGATGAATAATTAGCAATAATA
GTCTttagatgttaaaattttcagcaACTCTAATAAAGGCAGTACTGGAA
gaaaaaatcgagtttttttttacaaaatcttttTCACCAATAATGTCATG
ACGTATGGTTTAATTCTTGTTGtagataaaatattaaaagacgGCGCTTC
TAATTACACAATGAGGCGCTTCTACGACGTCGCTAAAGAAGAATTCGAAA
AGCTAGAAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024341XLOC_024341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040132-exon-sc0002320-1491911889:9339..9482TCONS_00040132-exon-sc0002320-1491911889:9339..9482Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1510915933:9339..9482TCONS_00040132-exon-sc0002320-1510915933:9339..9482Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1575043694:9339..9482TCONS_00040132-exon-sc0002320-1575043694:9339..9482Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1491911889:10165..10189TCONS_00040132-exon-sc0002320-1491911889:10165..10189Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1510915933:10165..10189TCONS_00040132-exon-sc0002320-1510915933:10165..10189Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1575043694:10165..10189TCONS_00040132-exon-sc0002320-1575043694:10165..10189Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1491911889:10843..10965TCONS_00040132-exon-sc0002320-1491911889:10843..10965Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1510915933:10843..10965TCONS_00040132-exon-sc0002320-1510915933:10843..10965Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1575043694:10843..10965TCONS_00040132-exon-sc0002320-1575043694:10843..10965Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1491911889:11841..11873TCONS_00040132-exon-sc0002320-1491911889:11841..11873Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1510915933:11841..11873TCONS_00040132-exon-sc0002320-1510915933:11841..11873Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1575043694:11841..11873TCONS_00040132-exon-sc0002320-1575043694:11841..11873Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1491911889:12255..12299TCONS_00040132-exon-sc0002320-1491911889:12255..12299Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1510915933:12255..12299TCONS_00040132-exon-sc0002320-1510915933:12255..12299Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1575043694:12255..12299TCONS_00040132-exon-sc0002320-1575043694:12255..12299Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1491911889:13168..13219TCONS_00040132-exon-sc0002320-1491911889:13168..13219Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1510915933:13168..13219TCONS_00040132-exon-sc0002320-1510915933:13168..13219Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1575043694:13168..13219TCONS_00040132-exon-sc0002320-1575043694:13168..13219Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1491911889:14564..14653TCONS_00040132-exon-sc0002320-1491911889:14564..14653Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1510915933:14564..14653TCONS_00040132-exon-sc0002320-1510915933:14564..14653Clytia hemisphaericaexon
TCONS_00040132-exon-sc0002320-1575043694:14564..14653TCONS_00040132-exon-sc0002320-1575043694:14564..14653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002320supercontigsc0002320:9339..14653 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00376635	4.88933	0	0	0	0	0.00126784	0	0	0	0	0	1.30457	0	1.40769	1.79969e-07	0	0	2.28891	1.08604e-05	0	0.264147	0	4.79925e-06	0	0	0	0	2.79479	6.28255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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