TCONS_00040106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040106
Unique NameTCONS_00040106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040106 ID=TCONS_00040106|Name=TCONS_00040106|organism=Clytia hemisphaerica|type=transcript|length=395bp
atGAAATTTTCGAGTCCGAGTCATCACTCATGTCATCGTCtttgttttcc
tgtttttcattttctctataATTGCCACTACTACAGCTACATATAAAATT
ATCCACAATTAATATATTGACCATTTTCCATTTACTTGTCTCCATTCCTA
TGTTGAATAATATCCTAATATCAGGAATATCGGGGTATTTCACGACATTG
CCATTTCCAACTGTTATTATTGAATCCATGAAAGACAAAGCTTTATAAAA
ATCACACTTGGGGGGTTCCTTCAAATCTGATTGTTTACGATTTAGTTTGC
ATTCTTTGAAATTATACATGATGAATTTCCATTCTTGCTTCAATCCATTG
ACTGtatagagaaaaaaattaaattatacaAGTGTCATAAACGTT
Run BLAST on NCBI

protein sequence of TCONS_00040106-protein

>TCONS_00040106-protein ID=TCONS_00040106-protein|Name=TCONS_00040106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MYNFKECKLNRKQSDLKEPPKCDFYKALSFMDSIITVGNGNVVKYPDIPD
IRILFNIGMETSKWKMVNILIVDNFICSCSSGNYRENEKQENKDDDMSDD
SDSKIS
Run BLAST on NCBI

transcript from alignment at sc0002308:6644..7038

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040106 ID=TCONS_00040106|Name=TCONS_00040106|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at sc0002308:6644..7038 (Clytia hemisphaerica)
AACGTTTATGACACTtgtataatttaatttttttctctataCAGTCAATG
GATTGAAGCAAGAATGGAAATTCATCATGTATAATTTCAAAGAATGCAAA
CTAAATCGTAAACAATCAGATTTGAAGGAACCCCCCAAGTGTGATTTTTA
TAAAGCTTTGTCTTTCATGGATTCAATAATAACAGTTGGAAATGGCAATG
TCGTGAAATACCCCGATATTCCTGATATTAGGATATTATTCAACATAGGA
ATGGAGACAAGTAAATGGAAAATGGTCAATATATTAATTGTGGATAATTT
TATATGTAGCTGTAGTAGTGGCAATtatagagaaaatgaaaaacaggaaa
acaaaGACGATGACATGAGTGATGACTCGGACTCGAAAATTTCat

Coding sequence (CDS) from alignment at sc0002308:6644..7038

>TCONS_00040106 ID=TCONS_00040106|Name=TCONS_00040106|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0002308:6644..7038 (Clytia hemisphaerica)
ATGTATAATTTCAAAGAATGCAAACTAAATCGTAAACAATCAGATTTGAA
GGAACCCCCCAAGTGTGATTTTTATAAAGCTTTGTCTTTCATGGATTCAA
TAATAACAGTTGGAAATGGCAATGTCGTGAAATACCCCGATATTCCTGAT
ATTAGGATATTATTCAACATAGGAATGGAGACAAGTAAATGGAAAATGGT
CAATATATTAATTGTGGATAATTTTATATGTAGCTGTAGTAGTGGCAATt
atagagaaaatgaaaaacaggaaaacaaaGACGATGACATGAGTGATGAC
TCGGACTCGAAAATTTCa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024322XLOC_024322Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040106-proteinTCONS_00040106-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040106-exon-sc0002308-1491911889:6644..7038TCONS_00040106-exon-sc0002308-1491911889:6644..7038Clytia hemisphaericaexon
TCONS_00040106-exon-sc0002308-1510915933:6644..7038TCONS_00040106-exon-sc0002308-1510915933:6644..7038Clytia hemisphaericaexon
TCONS_00040106-exon-sc0002308-1575043694:6644..7038TCONS_00040106-exon-sc0002308-1575043694:6644..7038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002308supercontigsc0002308:6644..7038 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190741	0	0.431932	0.502086	0.257224	0.203262	2.20704	3.3385	0.321467	1.59275	0.772983	0.508129	1.96925	1.86677	1.58471	1.16232	0.286376	1.1946	2.9647	4.06516	0.764463	0.852266	0.874797	1.51805	2.86706	2.19324	5.26976	2.79126	1.0345	1.76183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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