TCONS_00040103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040103
Unique NameTCONS_00040103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040103 ID=TCONS_00040103|Name=TCONS_00040103|organism=Clytia hemisphaerica|type=transcript|length=1512bp
ATCAATGGAGTACAGCTATCAAATCATTGTAGACATCCAGTCAAACAATC
GAGacaTGTATTCTTGGGTCGGGGATGACATTGCAATAGAAAAACCCGAT
GGAAAAACGTACATAATTTGTCTTGgaataaaacaagaaaaagACAAACT
GACAGCCAAAGAAAATGGAGATATTCAAGTCAATTTGGAAGACGGTTCAG
AAGAAGAAGGCATCTATGTTATCGCTTTGCCGTCAAACGAATCCACAGGT
TTCCAAGTGCATGATGGAGAAGGAAATTATGATATCATTGAAGAATCAAC
GCAAgGTTTTCAATCAAATGAAGAAGAGGAAGAggaagaggaagaagaag
aagaatacGAAAATGTTTGCATTGAAATTGGTCCTTCAGAGCAAGGTGAA
CCTAATTCAGACACAGTATACGAAAACTAATAAAACAATCTCGTAAGAAT
ATCGACCAGTCTCGTACCGAGAGCCACTTACACCgctttttgatttaatt
tatgAATGTGATATCACCATTTGCTCTCACAATCGTAAAAAGCGAACAAA
GAGACTGGATACTAGCTTTTATTTCAGCTTGAAAATAGTTTGGTGTAAAT
GGGTCCACCTGATAAAGTTGAATTGGGTCTGAAATGAACGTGTAGATCAG
ACTTAGACGCTCGCTTGAAGAAGATTGAGTTCTGGGTTTAATCCATGGGA
TGTGAGGGTTTTCTGATTTTGATCTAGAAGTTTTCTCTTTGTAATACAGT
AGATTCTCTTTAGTTCGAACCTTTAAAACTATAAAGTCTCCTTAACTCGA
GCAAGTTTTATGGTCACTTCAGTTAACAATGCCTTATTACCTATAAACCT
TACTTTATAATTCAAAATTTCCTATGAACGTTGCAACGCTGTCCCATAGC
CCCGATGGAACTTTTTCCCACAGTGGGGATGCAAATTTCTCTTTAATTCG
AACTTCTATAACTAAAATGTCTATTTAACTGGAGCAGGTTTGATGGTTCC
TTTAGTTAACAATGCCTTATAAACCTGTAAACCTTTCTTCATAACTCGAA
ATTTCCTTAACTCGAACAAGTTTGTGTTCCCAACGATGCGTTTTTGAGTT
ATCGACGTTACAACGCTGTCTCATAGCCCCAATGAGACTTTTTCCCATAG
TGGGGATGTAAAATTCTATCGAAAACCCAGTAAGGATAAAAAAATGTTGT
ATAGCGAATCTGCAGCGGAAAAATATGCTGACAGTGCCAACACTGCCGGG
CCTTTACACCACTTAGGCTTTCTTGTTCGAGTTAAGGAGAAATTAGAGTT
ATAGAGGTTCGAGTTAAAGAGACTCCACTGTATGAAACTTTCAGCTCACA
AAATTTTATAGAATTTTAAGGCATTTCTTGTTTGAAAttagtttattttt
aaaattcacaGCTTGAAGTTGGAGAGCAGAGTTGCAAACTCAATGGAACT
AATATGGACAGTTTCTTTTATAATATGTAAATAACATTATATCACAACTC
TCCTactttttt
Run BLAST on NCBI

protein sequence of TCONS_00040103-protein

>TCONS_00040103-protein ID=TCONS_00040103-protein|Name=TCONS_00040103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
SMEYSYQIIVDIQSNNRDMYSWVGDDIAIEKPDGKTYIICLGIKQEKDKL
TAKENGDIQVNLEDGSEEEGIYVIALPSNESTGFQVHDGEGNYDIIEEST
QGFQSNEEEEEEEEEEEEYENVCIEIGPSEQGEPNSDTVYEN
Run BLAST on NCBI

transcript from alignment at sc0002308:21310..26576+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040103 ID=TCONS_00040103|Name=TCONS_00040103|organism=Clytia hemisphaerica|type=transcript|length=5267bp|location=Sequence derived from alignment at sc0002308:21310..26576+ (Clytia hemisphaerica)
ATCAATGGAGTACAGCTATCAAATCATTGTAGACATCCAGTCAAACAATC
GAGGTAGGGTCCATATGATCCCCACCCCGGGGGGTTACTATCCTTGCTGG
CCAACGGGGGTGTTCCACAGAtggaaaaaagtgaccctgaatgggactaa
aaCTCGCAAATCTTCTACTTATTcccaaaatctacaaaaaaggtacccta
cgagggactgattttcttttctgatattttttataagtatCATGGATTGT
GTTTCGAAAAATGATTGcgcgaatgcgtgaatttgggtaAAAAAATGCTT
GAAGCATTCCTACGCTTctttttctcagattttttcacagaaaacCGAGA
CAGACTGAGACACAGAATCTCGCTAACCGAAACAGAACGACGCACCTCAA
GTATAAAACACGCCCGTGGGCGGGGTCGTACAGGGTAGTCTATACGAGAG
GTCAGCCGCGTTGGAAAGGTTTATCAGCGGGTTGAATAAATTATTAAAGA
AGGATTTCGTGCAGTCTTTTTGACGTCGTTGTTTTCATCAatcatgtttt
taaaatctaaCCTTTTATTCTTGGATTGAGCGAGATAAATAGCACTGCCT
TACGACGAAACCCTCGTCTAAAAAAGATTATGCAATATTATATTATGCAT
TATATACAAATTTTACCTCATAAATAACTTCCAAGatgtttaaaaaagaa
aagaaaatctatgTAAAAAAAATACTAGTCCGGAGCCAGTCCCGGTATGG
ATCTTGATATTATCTCAAACGNAAAAATACTAGTCCGGAGCCAGTCCCGG
TATGGATCTAAAAAAGATTTGACGTTCGAATCGAGGAAGCTCCTACAGTG
actttcaagcaaaaataattctgacgtcaattattcACAATATCAAGTGA
TGTCGTTGCCTTTACCAGACGACCACGGATTTTTCCTCGACACTGTTcag
agtgataaaaaaatcgcgcgttgggatagagataggctaGTGACGCCGTT
GcaaattttcgaatttaaaaAGGCGTGGCATTTTCTACGAGTTACTAAAA
ATGTGTTTTGAAAGTCTATGCACAAGTAAAATCGGTGTTCTTTTAGGCGA
GAAAATGATAGAAGTTGTTGTCCCATAAGCTGCGATATACCTATGATCGT
TTTAAAATTAAAGTATTTATTTAAAACTCATATCATAATCCATAACTTAA
CTTTGCgtaatattgttttttttttacagacaTGTATTCTTGGGTCGGGG
ATGACATTGCAATAGAAAAACCCGATGGAAAAACGTACATAATTTGTCTT
GgaataaaacaagaaaaaggtgctagaaaatcattttgaatATCATAGAT
TCctctgtaattatcagacataTCACTCTTGTTCCACGATTTTATTGGTC
CTATTTTTACACGCTTATCatgactctctaattcgaacctctctCATTCG
AAATTTGATACAAGGAGGGCGTCTTACATTTTTCACAAGAGCACTCCTAC
ACTTGCGTTTTTGATACCGTCGTCGAGCAGAATATTCTTGTATTTCCTTT
ACCAGTCTCCTCAAATACTAACCGGGCCACTGAGATTCGGCATGTATATA
AAAATTAACATATTATTCCCCTCATTTGGAAAGTGGCATAAAATGACGAG
GGTAAATTGTATAAAAAAATCTCGATTGAGTTTTTGCACAACTTTCACTG
TATTCTGGTTTCAGACAAACTGACAGCCAAAGAAAATGGAGATATTCAAG
TCAATTTGGAAGACGGTTCAGAAGAAGAAGGCATCTATGTTATCGCTTTG
CCGTCAAACGAATCCACAGGTATGTGAGATAAGACCATGTTCAAACGTca
cggttccgttccgttccgttccgaaacggttTCGAAACAAGCGTGAACGT
CAAGATTCGAAACGTcgaaaaagaagacgttacaaagcaaaaaagatcaa
aacggtttcgcttcacttttttcatcggaacggaacttctccgttttctt
gctccgaaacgttccaaTACCAATATGAACagactcgatccgtaacgaaa
atcacaccggagcgaaacggaacagtaacgtgtgaacatagtctaatcat
ttttcaatagaattactcTCAGGGAGGGACATCCAGGCAAAATGACCGAC
GGGTATATGTACACCCTAAAGTGTGTGTTTTAAATACTGAAATACTGTTC
TTCTTTAGCTTTTTTTATCTTTCCTAGAAGGTACTCGACCGATTTTTCTG
TATTTTCTTCTTGCTAAAATCCTATGTAATAAACCACCAATGGAAGCTTC
GAGTAATGACATTATAAATCCACGCCCAGTCTCCAACCAAAGAGTTCTTA
TTTTTCAGGTTTCCAAGTGCATGATGGAGAAGGAAATTATGATATCATTG
AAGAATCAACGCAAggtaaagtcaaaaataaacaatctatataccttttc
gaccgtagccgccaattgccgcgcgggcatttctTTGTCCgttttatccc
actaaactcgatccaaaccttttttgacacatttttctattgtcaatAGA
TGCAAAAAatggactgggacggttttagtggaataaagcggacaaaaaaa
tacccgCGCGTCAATTGGccactacggtcgaaaaggtataTCATAAATCA
TGTTCTTAGGCTTTATTTTGggttcaatagaccttttcataaattacgtc
atgaacatcacttgcctcttattcaaacaattaccatgggcgcgttcaca
ctggaaagtttacctaattaaatctatcaaagttaaacaaagagatttat
gatggatgaatacactggtttattacagttctttgtagNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggtgtccctaatta
aagtatcgagtcgaaacacaactatgagtagaaagttttatgtgcgtgtt
cacaaaattgtattttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttt
gtaataagcctgtgtgatggagaacgttcttatattttagcgataacaca
cacaaacttttctactcaatcgcatgttcaaactcgatactttaattaaa
ACGGAAGGCaattttgttcgagttaaagccATTTTCGAGCCCTGGATACT
AgtttataagacattgttaaAGTGAAGAAACCATCTAACTTGTTtgaatt
aaggagacattcgagttatagagggtCGTGTTATAAACATTCCACTGTAT
AAAAGTTTATGTGCAAGCGAAACCAATCCTTATATTATCATggtgtcctg
aaaaaaagtagAAGGTCGAAACATATCGCTAGGTACTGTCGCTTTGTACT
ACTGTTTATTAACCCGAAAAAGCATCGTATTATGCAgaggtagagcatcc
ggctacagtGTGTGTAAGTCAGGGGTTTAATCCCCGACTGGGTACACTGG
GTATCACAAAAATCTTCNGGTGTGTGTAAGTCAGGGGTTTAATCCCCGAC
TGGGTACACTGGGTATCACGAAAATCTTCGCTCTTAGTGAAAAATGGGTC
AGGGGGGGAGTAAAGAAAGGGCGAGGTCGGCATTGAAACATGCTTTGCAA
AGCAATCTGTTTTGATTTCTTCATCTTTCCGGACTCTCttccattttttt
ttgtcaaaataattgGATTTTTTTACGTTATGATATGATTTCAATTATTT
GCAATTTTAGGTTTTCAATCAAATGAAGAAGAGGAAGAggaagaggaaga
agaagaagaatacGAAAATGTTTGCATTGAAATTGGTCCTTCAGAGCAAG
GTGAACCTAATTCAGACACAGTATACGAAAACTAATAAAACAATCTCGTA
AGAATATCGACCAGTCTCGTACCGAGAGCCACTTACACCgctttttgatt
taatttatgAATGTGATATCACCATTTGCTCTCACAATCGTAAAAAGCGA
ACAAAGAGACTGGATACTAGCTTTTATTTCAGCTTGAAAATAGTTTGGTG
TAAATGGGTCCACCTGATAAAGTTGAATTGGGTCTGAAATGAACGTGTAG
ATCAGACTTAGACGCTCGCTTGAAGAAGATTGAGTTCTGGGTTTAATCCA
TGGGATGTGAGGGTTTTCTGATTTTGATCTAGAAGTTTTCTCTTTGTAAT
ACAGTAGATTCTCTTTAGTTCGAACCTTTAAAACTATAAAGTCTCCTTAA
CTCGAGCAAGTTTTATGGTCACTTCAGTTAACAATGCCTTATTACCTATA
AACCTTACTTTATAATTCAAAATTTCCTATGAACGTTGCAACGCTGTCCC
ATAGCCCCGATGGAACTTTTTCCCACAGTGGGGATGCAAATTTCTCTTTA
ATTCGAACTTCTATAACTAAAATGTCTATTTAACTGGAGCAGGTTTGATG
GTTCCTTTAGTTAACAATGCCTTATAAACCTGTAAACCTTTCTTCATAAC
TCGAAATTTCCTTAACTCGAACAAGTTTGTGTTCCCAACGATGCGTTTTT
GAGTTATCGACGTTACAACGCTGTCTCATAGCCCCAATGAGACTTTTTCC
CATAGTGGGGATGTAAAATTCTATCGAAAACCCAGTAAGGATAAAAAAAT
GTTGTATAGCGAATCTGCAGCGGAAAAATATGCTGACAGTGCCAACACTG
CCGGGCCTTTACACCACTTAGGCTTTCTTGTTCGAGTTAAGGAGAAATTA
GAGTTATAGAGGTTCGAGTTAAAGAGACTCCACTGTATGAAACTTTCAGC
TCACAAAATTTTATAGAATTTTAAGGCATTTCTTGTTTGAAAttagttta
tttttaaaattcacaGCTTGAAGTTGGAGAGCAGAGTTGCAAACTCAATG
GAACTAATATGGACAGTTTCTTTTATAATATGTAAATAACATTATATCAC
AACTCTCCTactttttt

Coding sequence (CDS) from alignment at sc0002308:21310..26576+

>TCONS_00040103 ID=TCONS_00040103|Name=TCONS_00040103|organism=Clytia hemisphaerica|type=CDS|length=2145bp|location=Sequence derived from alignment at sc0002308:21310..26576+ (Clytia hemisphaerica)
TCAATGGAGTACAGCTATCAAATCATTGTAGACATCCAGTCAAACAATCG
AGacaTGTATTCTTGGGTCGGGGATGACATTGCAATAGAAAAACCCGATG
GAAAAACGTACATAATTTGTCTTGgaataaaacaagaaaaagACAAACTG
ACAGCCAAAGAAAATGGAGATATTCAAGTCAATTTGGAAGACGGTTCAGA
AGAAGAAGGCATCTATGTTATCGCTTTGCCGTCAAACGAATCCACAGGTT
TCCAAGTGCATGATGGAGAAGGAAATTATGATATCATTGAAGAATCAACG
CAAgGTTTTCAATCAAATGAAGAAGAGGAAGAggaagaggaagaagaaga
agaatacGAAAATGTTTGCATTGAAATTGGTCCTTCAGAGCAAGGTGAAC
CTAATTCAGACACAGTATACGAAAACTAATCAATGGAGTACAGCTATCAA
ATCATTGTAGACATCCAGTCAAACAATCGAGacaTGTATTCTTGGGTCGG
GGATGACATTGCAATAGAAAAACCCGATGGAAAAACGTACATAATTTGTC
TTGgaataaaacaagaaaaagACAAACTGACAGCCAAAGAAAATGGAGAT
ATTCAAGTCAATTTGGAAGACGGTTCAGAAGAAGAAGGCATCTATGTTAT
CGCTTTGCCGTCAAACGAATCCACAGGTTTCCAAGTGCATGATGGAGAAG
GAAATTATGATATCATTGAAGAATCAACGCAAgGTTTTCAATCAAATGAA
GAAGAGGAAGAggaagaggaagaagaagaagaatacGAAAATGTTTGCAT
TGAAATTGGTCCTTCAGAGCAAGGTGAACCTAATTCAGACACAGTATACG
AAAACTAATCAATGGAGTACAGCTATCAAATCATTGTAGACATCCAGTCA
AACAATCGAGacaTGTATTCTTGGGTCGGGGATGACATTGCAATAGAAAA
ACCCGATGGAAAAACGTACATAATTTGTCTTGgaataaaacaagaaaaag
ACAAACTGACAGCCAAAGAAAATGGAGATATTCAAGTCAATTTGGAAGAC
GGTTCAGAAGAAGAAGGCATCTATGTTATCGCTTTGCCGTCAAACGAATC
CACAGGTTTCCAAGTGCATGATGGAGAAGGAAATTATGATATCATTGAAG
AATCAACGCAAgGTTTTCAATCAAATGAAGAAGAGGAAGAggaagaggaa
gaagaagaagaatacGAAAATGTTTGCATTGAAATTGGTCCTTCAGAGCA
AGGTGAACCTAATTCAGACACAGTATACGAAAACTAATCAATGGAGTACA
GCTATCAAATCATTGTAGACATCCAGTCAAACAATCGAGacaTGTATTCT
TGGGTCGGGGATGACATTGCAATAGAAAAACCCGATGGAAAAACGTACAT
AATTTGTCTTGgaataaaacaagaaaaagACAAACTGACAGCCAAAGAAA
ATGGAGATATTCAAGTCAATTTGGAAGACGGTTCAGAAGAAGAAGGCATC
TATGTTATCGCTTTGCCGTCAAACGAATCCACAGGTTTCCAAGTGCATGA
TGGAGAAGGAAATTATGATATCATTGAAGAATCAACGCAAgGTTTTCAAT
CAAATGAAGAAGAGGAAGAggaagaggaagaagaagaagaatacGAAAAT
GTTTGCATTGAAATTGGTCCTTCAGAGCAAGGTGAACCTAATTCAGACAC
AGTATACGAAAACTAATCAATGGAGTACAGCTATCAAATCATTGTAGACA
TCCAGTCAAACAATCGAGacaTGTATTCTTGGGTCGGGGATGACATTGCA
ATAGAAAAACCCGATGGAAAAACGTACATAATTTGTCTTGgaataaaaca
agaaaaagACAAACTGACAGCCAAAGAAAATGGAGATATTCAAGTCAATT
TGGAAGACGGTTCAGAAGAAGAAGGCATCTATGTTATCGCTTTGCCGTCA
AACGAATCCACAGGTTTCCAAGTGCATGATGGAGAAGGAAATTATGATAT
CATTGAAGAATCAACGCAAgGTTTTCAATCAAATGAAGAAGAGGAAGAgg
aagaggaagaagaagaagaatacGAAAATGTTTGCATTGAAATTGGTCCT
TCAGAGCAAGGTGAACCTAATTCAGACACAGTATACGAAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024321XLOC_024321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040103-exon-sc0002308-1491911889:21310..21362TCONS_00040103-exon-sc0002308-1491911889:21310..21362Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1510915933:21310..21362TCONS_00040103-exon-sc0002308-1510915933:21310..21362Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1575043694:21310..21362TCONS_00040103-exon-sc0002308-1575043694:21310..21362Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1491911889:22539..22628TCONS_00040103-exon-sc0002308-1491911889:22539..22628Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1510915933:22539..22628TCONS_00040103-exon-sc0002308-1510915933:22539..22628Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1575043694:22539..22628TCONS_00040103-exon-sc0002308-1575043694:22539..22628Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1491911889:23024..23128TCONS_00040103-exon-sc0002308-1491911889:23024..23128Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1510915933:23024..23128TCONS_00040103-exon-sc0002308-1510915933:23024..23128Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1575043694:23024..23128TCONS_00040103-exon-sc0002308-1575043694:23024..23128Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1491911889:23668..23724TCONS_00040103-exon-sc0002308-1491911889:23668..23724Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1510915933:23668..23724TCONS_00040103-exon-sc0002308-1510915933:23668..23724Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1575043694:23668..23724TCONS_00040103-exon-sc0002308-1575043694:23668..23724Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1491911889:25370..26576TCONS_00040103-exon-sc0002308-1491911889:25370..26576Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1510915933:25370..26576TCONS_00040103-exon-sc0002308-1510915933:25370..26576Clytia hemisphaericaexon
TCONS_00040103-exon-sc0002308-1575043694:25370..26576TCONS_00040103-exon-sc0002308-1575043694:25370..26576Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040103-proteinTCONS_00040103-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002308supercontigsc0002308:21310..26576 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129608	0.44538	0.404787	1.01314	0.730781	0.703814	0.892448	0.48817	0.664918	0.73028	0.368519	0.503428	0.72504	0.619557	0.150715	0.54727	0.147168	0.771721	0.301494	0.189613	0	0	0.327347	0.270586	0.0977329	0	0.253136	0.260186	0	0.193153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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