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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040100 ID=TCONS_00040100|Name=TCONS_00040100|organism=Clytia hemisphaerica|type=transcript|length=960bp
CTATTATTCAGTTAAAAAGAGCGAATTTTACATAACAGATCAAATTGTTA
TTGTTTATACCGACCATAAACCGCTGACCTATCTATCCACGTTTCGTGAT
ATTGTAAATAAAAGATACCGCTGGATAGAATATATTGAGAACATAGGAAT
TATTATTCGTTACATTGAAGGAAAAGACAACGTCATAGGTGATTATATCA
GCAGAAATTTAAAAACAGACATTAAAACTGAAAAACGTTGGAGACCATCt
gtaaatactgtaaatattaCTGACTTTAATAAACATTCATTCATTGCCCA
GCAACGTAACGACGCCGAGATTCGTGCCGTTTTTGATCATCTTCAGGGAG
AAAAAGTTGAGGTTCCATTGGTTTATAAACGTCATTTGAGTAAATTGAGA
ATTGTTGACGGCTTGTTGAAGTATTTTAAAGGAGGGAAATCATATGTTGT
TGTTCCGTTAGAATTGAGAGATGAGATTGTTGAAAGAGGTCATTGTCAGT
TTGCAGCCGGACATTTTGGGGTTGAAAAGACGGAAAGGAGAATTTTGGAA
AGTAATCATTGGTGGCCAGGTGTAAGAAAAGCTGTTGAGGAATTTGTAGG
AAATTATAAAGTTTGCATTTGTATGAAACCATCAAATCGTTGTTTCACTC
ATTCAGGGCGTAGACCATTTCCATTAAGACCATTGGATTTGATTTCCGTT
GATTATATTGTGGAATTGCCTGTGACGGAAAGTGAAAATAGACACATTTT
GACGGTGGTTGATCagtttacaaaatttctaacGGTGTATCCATGCAAGG
ATAGGACAGCAAAAAACTGCTGCAAATTGTATCTACGATTACTCATTGAG
GTTTGGTATACCACTCAAACTCCTCAGTGATCAAGACCCCGCCTATGAAA
GTGAACTTTTCAACGAATTATTACTCCTGTTCGGAGTGAAGAAACTGAAA
ACGACGGCTT Run BLAST on NCBI protein sequence of TCONS_00040100-protein >TCONS_00040100-protein ID=TCONS_00040100-protein|Name=TCONS_00040100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
YYSVKKSEFYITDQIVIVYTDHKPLTYLSTFRDIVNKRYRWIEYIENIGI
IIRYIEGKDNVIGDYISRNLKTDIKTEKRWRPSVNTVNITDFNKHSFIAQ
QRNDAEIRAVFDHLQGEKVEVPLVYKRHLSKLRIVDGLLKYFKGGKSYVV
VPLELRDEIVERGHCQFAAGHFGVEKTERRILESNHWWPGVRKAVEEFVG
NYKVCICMKPSNRCFTHSGRRPFPLRPLDLISVDYIVELPVTESENRHIL
TVVDQFTKFLTVYPCKDRTAKNCCKLYLRLLIEVWYTTQTPQ Run BLAST on NCBI transcript from alignment at sc0002307:5038..5997 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040100 ID=TCONS_00040100|Name=TCONS_00040100|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0002307:5038..5997 (Clytia hemisphaerica)
AAGCCGTCGTTTTCAGTTTCTTCACTCCGAACAGGAGTAATAATTCGTTG
AAAAGTTCACTTTCATAGGCGGGGTCTTGATCACTGAGGAGTTTGAGTGG
TATACCAAACCTCAATGAGTAATCGTAGATACAATTTGCAGCAGTTTTTT
GCTGTCCTATCCTTGCATGGATACACCgttagaaattttgtaaactGATC
AACCACCGTCAAAATGTGTCTATTTTCACTTTCCGTCACAGGCAATTCCA
CAATATAATCAACGGAAATCAAATCCAATGGTCTTAATGGAAATGGTCTA
CGCCCTGAATGAGTGAAACAACGATTTGATGGTTTCATACAAATGCAAAC
TTTATAATTTCCTACAAATTCCTCAACAGCTTTTCTTACACCTGGCCACC
AATGATTACTTTCCAAAATTCTCCTTTCCGTCTTTTCAACCCCAAAATGT
CCGGCTGCAAACTGACAATGACCTCTTTCAACAATCTCATCTCTCAATTC
TAACGGAACAACAACATATGATTTCCCTCCTTTAAAATACTTCAACAAGC
CGTCAACAATTCTCAATTTACTCAAATGACGTTTATAAACCAATGGAACC
TCAACTTTTTCTCCCTGAAGATGATCAAAAACGGCACGAATCTCGGCGTC
GTTACGTTGCTGGGCAATGAATGAATGTTTATTAAAGTCAGtaatattta
cagtatttacaGATGGTCTCCAACGTTTTTCAGTTTTAATGTCTGTTTTT
AAATTTCTGCTGATATAATCACCTATGACGTTGTCTTTTCCTTCAATGTA
ACGAATAATAATTCCTATGTTCTCAATATATTCTATCCAGCGGTATCTTT
TATTTACAATATCACGAAACGTGGATAGATAGGTCAGCGGTTTATGGTCG
GTATAAACAATAACAATTTGATCTGTTATGTAAAATTCGCTCTTTTTAAC
TGAATAATAG Coding sequence (CDS) from alignment at sc0002307:5038..5997 >TCONS_00040100 ID=TCONS_00040100|Name=TCONS_00040100|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at sc0002307:5038..5997 (Clytia hemisphaerica)
TCACTGAGGAGTTTGAGTGGTATACCAAACCTCAATGAGTAATCGTAGAT
ACAATTTGCAGCAGTTTTTTGCTGTCCTATCCTTGCATGGATACACCgtt
agaaattttgtaaactGATCAACCACCGTCAAAATGTGTCTATTTTCACT
TTCCGTCACAGGCAATTCCACAATATAATCAACGGAAATCAAATCCAATG
GTCTTAATGGAAATGGTCTACGCCCTGAATGAGTGAAACAACGATTTGAT
GGTTTCATACAAATGCAAACTTTATAATTTCCTACAAATTCCTCAACAGC
TTTTCTTACACCTGGCCACCAATGATTACTTTCCAAAATTCTCCTTTCCG
TCTTTTCAACCCCAAAATGTCCGGCTGCAAACTGACAATGACCTCTTTCA
ACAATCTCATCTCTCAATTCTAACGGAACAACAACATATGATTTCCCTCC
TTTAAAATACTTCAACAAGCCGTCAACAATTCTCAATTTACTCAAATGAC
GTTTATAAACCAATGGAACCTCAACTTTTTCTCCCTGAAGATGATCAAAA
ACGGCACGAATCTCGGCGTCGTTACGTTGCTGGGCAATGAATGAATGTTT
ATTAAAGTCAGtaatatttacagtatttacaGATGGTCTCCAACGTTTTT
CAGTTTTAATGTCTGTTTTTAAATTTCTGCTGATATAATCACCTATGACG
TTGTCTTTTCCTTCAATGTAACGAATAATAATTCCTATGTTCTCAATATA
TTCTATCCAGCGGTATCTTTTATTTACAATATCACGAAACGTGGATAGAT
AGGTCAGCGGTTTATGGTCGGTATAAACAATAACAATTTGATCTGTTATG
TAAAATTCGCTCTTTTTAACTGAATAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040100-exon-sc0002307-1491911889:5038..5997 | TCONS_00040100-exon-sc0002307-1491911889:5038..5997 | Clytia hemisphaerica | exon |
| TCONS_00040100-exon-sc0002307-1510915933:5038..5997 | TCONS_00040100-exon-sc0002307-1510915933:5038..5997 | Clytia hemisphaerica | exon |
| TCONS_00040100-exon-sc0002307-1575043694:5038..5997 | TCONS_00040100-exon-sc0002307-1575043694:5038..5997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002307 | supercontig | sc0002307:5038..5997 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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