TCONS_00040096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040096
Unique NameTCONS_00040096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040096 ID=TCONS_00040096|Name=TCONS_00040096|organism=Clytia hemisphaerica|type=transcript|length=587bp
CTAACAACAGTTTTGAATCGAAATTTGTTTGGATCAATTAAATAATCCGA
GAAGGTGTATCTTGCTTTTACTTCCGATGGAACAACAAAGTTGACGTTGC
ATGTACCATCAAGAGGTGCCTTTAAGTCTATTGACTTTAATGCCTGTGTT
TCTTTGTGAAACTCTTGAAAATCTTTAGAGGTAAGAATAATTTCGCTTAC
CTTTTTAACAGGAAACTTGGATTCATCTTGGTGCATCCAGTCTTGGCCGA
TGAACCATTCTGAGTTTGGCTGGACCTCTGATAACTGGACACCTCTCCTT
GTTGCTAAGTCAGCCATCATTTGATTGGAGTCGATGAATCGCCAGTCTTT
GATGTTTGTGAGTCGATGGACTTCGATTACTCTGTTTCGAACCCACTGCT
TGAGTTGAAGCTCACTGTTTGATATCCAATGAAGCACGATGGTGTTGTCT
GTGATTTTCAAGCATCCCTTGTGATGTTGTTGGAATGCTCTCTTGACAAC
TTCACCAGTGTGTACGTTTATCAATGCTGCAAACATCTCTGCTCGAGGTT
GTGTTGATGGTTGAGGAACGAGTTTTGATCGTgcgaa
Run BLAST on NCBI

protein sequence of TCONS_00040096-protein

>TCONS_00040096-protein ID=TCONS_00040096-protein|Name=TCONS_00040096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
FARSKLVPQPSTQPRAEMFAALINVHTGEVVKRAFQQHHKGCLKITDNTI
VLHWISNSELQLKQWVRNRVIEVHRLTNIKDWRFIDSNQMMADLATRRGV
QLSEVQPNSEWFIGQDWMHQDESKFPVKKVSEIILTSKDFQEFHKETQAL
KSIDLKAPLDGTCNVNFVVPSEVKARYTFSDYLIDPNKFRFKTVV
Run BLAST on NCBI

transcript from alignment at sc0002306:17518..18104

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040096 ID=TCONS_00040096|Name=TCONS_00040096|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at sc0002306:17518..18104 (Clytia hemisphaerica)
ttcgcACGATCAAAACTCGTTCCTCAACCATCAACACAACCTCGAGCAGA
GATGTTTGCAGCATTGATAAACGTACACACTGGTGAAGTTGTCAAGAGAG
CATTCCAACAACATCACAAGGGATGCTTGAAAATCACAGACAACACCATC
GTGCTTCATTGGATATCAAACAGTGAGCTTCAACTCAAGCAGTGGGTTCG
AAACAGAGTAATCGAAGTCCATCGACTCACAAACATCAAAGACTGGCGAT
TCATCGACTCCAATCAAATGATGGCTGACTTAGCAACAAGGAGAGGTGTC
CAGTTATCAGAGGTCCAGCCAAACTCAGAATGGTTCATCGGCCAAGACTG
GATGCACCAAGATGAATCCAAGTTTCCTGTTAAAAAGGTAAGCGAAATTA
TTCTTACCTCTAAAGATTTTCAAGAGTTTCACAAAGAAACACAGGCATTA
AAGTCAATAGACTTAAAGGCACCTCTTGATGGTACATGCAACGTCAACTT
TGTTGTTCCATCGGAAGTAAAAGCAAGATACACCTTCTCGGATTATTTAA
TTGATCCAAACAAATTTCGATTCAAAACTGTTGTTAG

Coding sequence (CDS) from alignment at sc0002306:17518..18104

>TCONS_00040096 ID=TCONS_00040096|Name=TCONS_00040096|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at sc0002306:17518..18104 (Clytia hemisphaerica)
ttcgcACGATCAAAACTCGTTCCTCAACCATCAACACAACCTCGAGCAGA
GATGTTTGCAGCATTGATAAACGTACACACTGGTGAAGTTGTCAAGAGAG
CATTCCAACAACATCACAAGGGATGCTTGAAAATCACAGACAACACCATC
GTGCTTCATTGGATATCAAACAGTGAGCTTCAACTCAAGCAGTGGGTTCG
AAACAGAGTAATCGAAGTCCATCGACTCACAAACATCAAAGACTGGCGAT
TCATCGACTCCAATCAAATGATGGCTGACTTAGCAACAAGGAGAGGTGTC
CAGTTATCAGAGGTCCAGCCAAACTCAGAATGGTTCATCGGCCAAGACTG
GATGCACCAAGATGAATCCAAGTTTCCTGTTAAAAAGGTAAGCGAAATTA
TTCTTACCTCTAAAGATTTTCAAGAGTTTCACAAAGAAACACAGGCATTA
AAGTCAATAGACTTAAAGGCACCTCTTGATGGTACATGCAACGTCAACTT
TGTTGTTCCATCGGAAGTAAAAGCAAGATACACCTTCTCGGATTATTTAA
TTGATCCAAACAAATTTCGATTCAAAACTGTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024314XLOC_024314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040096-exon-sc0002306-1491911889:17518..18104TCONS_00040096-exon-sc0002306-1491911889:17518..18104Clytia hemisphaericaexon
TCONS_00040096-exon-sc0002306-1510915933:17518..18104TCONS_00040096-exon-sc0002306-1510915933:17518..18104Clytia hemisphaericaexon
TCONS_00040096-exon-sc0002306-1575043694:17518..18104TCONS_00040096-exon-sc0002306-1575043694:17518..18104Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040096-proteinTCONS_00040096-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002306supercontigsc0002306:17518..18104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.914045	2.3044	0.571533	0.134537	1.01257	0.355463	1.15708	1.21739	0.512275	0.465064	0	0.734469	0.563188	0.773261	0	0.149234	0	0.183126	0.204543	0.190054	0	0.132788	0	0.129202	1.09318	1.68116	0	0	0.104173	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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