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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040084 ID=TCONS_00040084|Name=TCONS_00040084|organism=Clytia hemisphaerica|type=transcript|length=1014bp
ATAACTTTGAGAACGTCAGTCTCTTCAACtctggaaaaatcaaaaacctc
GTCAGTGTTCCTTTGAGAAATTATTTCTTTGTCACTTGGATGTTTTTCAA
AtggttttataatttttttaccgGAACTCTGATTTGAGTTTTGACTATTC
GAGTGTCTCAGTAACCCTATTAAAATAAGAGTTGAAAATATCGGCAACGC
TTTCATTTGATGTATGTAAAGCGTTGTTTTCAAGCAATTGAATCCCTCCT
TCAgctttgcagtttttatctgaaaattttgttttaatagcATCCCAGAA
GTGTTTAGACTTGCCGGTGTTATTGCTGAAGAAAGTTTTCTTTGCTTTCT
TGTTAAGTTTGACGACCAAATTTCTCTGGCGTTTATAACTTGCCTCATCT
TCAGAATTTTGAGATTTATTTGCTAATTCTTTGAGATGAGAGTGCTTCAT
GATTGCTTTCTNGGACAACATTTTCCGAGTGATGTTGTCATGGTTAACAA
GATACAGAttatatttttcacaaaaatcatgaAGAACACTATTAATAGCA
TTTACTTCAGATTGAATTCCTTGTTTATCATTGCGAGTAATCACATTTGA
TATGATCAGCTCTGTTTCAGGAGTGATTTGATTGATCATTTCTCggattt
tttcaaggtttttaactgTGATATCGTTTGTACCTACATGTAATATGAGA
TACTTTGGCTTCTTTTTATTTAACAAAGGTTTCAAGTAGTCGATCATATC
AGTTGAATCAGCACCTGGAAAACTTCTTACAATTGATTTGACTGACTTCG
TTGAGACACCATTTCCTTCGATGTTGTTTAACATGCTATCTCCGCATATT
AGAAGATCTTTTCGTTTAGAAgcagatttgttttgatttttctgagatGA
ACTTTTTTGTGTGATTTCTTTCGACGATTTAATAACAGAATGATTTTTCG
CTTTCAAGTTCTCTCTATTTTCTGTTGTGTGTGTTATAAAAGCATCAtgt
ttttttgttcgaat Run BLAST on NCBI protein sequence of TCONS_00040084-protein >TCONS_00040084-protein ID=TCONS_00040084-protein|Name=TCONS_00040084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
IRTKKHDAFITHTTENRENLKAKNHSVIKSSKEITQKSSSQKNQNKSASK
RKDLLICGDSMLNNIEGNGVSTKSVKSIVRSFPGADSTDMIDYLKPLLNK
KKPKYLILHVGTNDITVKNLEKIREMINQITPETELIISNVITRNDKQGI
QSEVNAINSVLHDFCEKYNLYLVNHDNITRKMLSXKAIMKHSHLKELANK
SQNSEDEASYKRQRNLVVKLNKKAKKTFFSNNTGKSKHFWDAIKTKFSDK
NCKAEGGIQLLENNALHTSNESVADIFNSYFNRVTETLE Run BLAST on NCBI transcript from alignment at sc0002302:17619..18632 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040084 ID=TCONS_00040084|Name=TCONS_00040084|organism=Clytia hemisphaerica|type=transcript|length=1014bp|location=Sequence derived from alignment at sc0002302:17619..18632 (Clytia hemisphaerica)
attcgaacaaaaaaacaTGATGCTTTTATAACACACACAACAGAAAATAG
AGAGAACTTGAAAGCGAAAAATCATTCTGTTATTAAATCGTCGAAAGAAA
TCACACAAAAAAGTTCatctcagaaaaatcaaaacaaatctgcTTCTAAA
CGAAAAGATCTTCTAATATGCGGAGATAGCATGTTAAACAACATCGAAGG
AAATGGTGTCTCAACGAAGTCAGTCAAATCAATTGTAAGAAGTTTTCCAG
GTGCTGATTCAACTGATATGATCGACTACTTGAAACCTTTGTTAAATAAA
AAGAAGCCAAAGTATCTCATATTACATGTAGGTACAAACGATATCAcagt
taaaaaccttgaaaaaatccGAGAAATGATCAATCAAATCACTCCTGAAA
CAGAGCTGATCATATCAAATGTGATTACTCGCAATGATAAACAAGGAATT
CAATCTGAAGTAAATGCTATTAATAGTGTTCTtcatgatttttgtgaaaa
atataaTCTGTATCTTGTTAACCATGACAACATCACTCGGAAAATGTTGT
CCNAGAAAGCAATCATGAAGCACTCTCATCTCAAAGAATTAGCAAATAAA
TCTCAAAATTCTGAAGATGAGGCAAGTTATAAACGCCAGAGAAATTTGGT
CGTCAAACTTAACAAGAAAGCAAAGAAAACTTTCTTCAGCAATAACACCG
GCAAGTCTAAACACTTCTGGGATgctattaaaacaaaattttcagataaa
aactgcaaagcTGAAGGAGGGATTCAATTGCTTGAAAACAACGCTTTACA
TACATCAAATGAAAGCGTTGCCGATATTTTCAACTCTTATTTTAATAGGG
TTACTGAGACACTCGAATAGTCAAAACTCAAATCAGAGTTCcggtaaaaa
aattataaaaccaTTTGAAAAACATCCAAGTGACAAAGAAATAATTTCTC
AAAGGAACACTGACgaggtttttgatttttccagaGTTGAAGAGACTGAC
GTTCTCAAAGTTAT Coding sequence (CDS) from alignment at sc0002302:17619..18632 >TCONS_00040084 ID=TCONS_00040084|Name=TCONS_00040084|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at sc0002302:17619..18632 (Clytia hemisphaerica)
attcgaacaaaaaaacaTGATGCTTTTATAACACACACAACAGAAAATAG
AGAGAACTTGAAAGCGAAAAATCATTCTGTTATTAAATCGTCGAAAGAAA
TCACACAAAAAAGTTCatctcagaaaaatcaaaacaaatctgcTTCTAAA
CGAAAAGATCTTCTAATATGCGGAGATAGCATGTTAAACAACATCGAAGG
AAATGGTGTCTCAACGAAGTCAGTCAAATCAATTGTAAGAAGTTTTCCAG
GTGCTGATTCAACTGATATGATCGACTACTTGAAACCTTTGTTAAATAAA
AAGAAGCCAAAGTATCTCATATTACATGTAGGTACAAACGATATCAcagt
taaaaaccttgaaaaaatccGAGAAATGATCAATCAAATCACTCCTGAAA
CAGAGCTGATCATATCAAATGTGATTACTCGCAATGATAAACAAGGAATT
CAATCTGAAGTAAATGCTATTAATAGTGTTCTtcatgatttttgtgaaaa
atataaTCTGTATCTTGTTAACCATGACAACATCACTCGGAAAATGTTGT
CCNAGAAAGCAATCATGAAGCACTCTCATCTCAAAGAATTAGCAAATAAA
TCTCAAAATTCTGAAGATGAGGCAAGTTATAAACGCCAGAGAAATTTGGT
CGTCAAACTTAACAAGAAAGCAAAGAAAACTTTCTTCAGCAATAACACCG
GCAAGTCTAAACACTTCTGGGATgctattaaaacaaaattttcagataaa
aactgcaaagcTGAAGGAGGGATTCAATTGCTTGAAAACAACGCTTTACA
TACATCAAATGAAAGCGTTGCCGATATTTTCAACTCTTATTTTAATAGGG
TTACTGAGACACTCGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040084-exon-sc0002302-1491911889:17619..18632 | TCONS_00040084-exon-sc0002302-1491911889:17619..18632 | Clytia hemisphaerica | exon |
| TCONS_00040084-exon-sc0002302-1510915933:17619..18632 | TCONS_00040084-exon-sc0002302-1510915933:17619..18632 | Clytia hemisphaerica | exon |
| TCONS_00040084-exon-sc0002302-1575043694:17619..18632 | TCONS_00040084-exon-sc0002302-1575043694:17619..18632 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002302 | supercontig | sc0002302:17619..18632 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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