TCONS_00040080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040080
Unique NameTCONS_00040080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040080 ID=TCONS_00040080|Name=TCONS_00040080|organism=Clytia hemisphaerica|type=transcript|length=552bp
GTTTAtaaaaagtcgatttttgaagacaGTCTCTTGTTATAAGAATCgtc
aagaaatttgaaaaataaaagccGTCGAGCGTATGTCGTTTTTCGAGTTA
TGAACTTAAAAGGATTTAAGCGATTAAACGATTGTCCGGCAACTTCCGTG
TTCATATCACCAACAAATTCAAATCTACGGGTGGTATTTGCATTCAGGAG
ATGTCAAAACGCATTTTGGCATGGTATGTTTCTCAGCATGAAATACATCT
ACCATATGTAAAAGTTTCATGTAATTTGAAGCGATTTCATTACCTTCCGA
ACTTAGTCGTTTGAAAAACGGGTGTAAATCACAAGCACATCATACACAAT
TCCTTTGATTTGGTCCGTAGATGGAATTTCTCCAAAAACATCTAGAAGCC
ACAGAAAGACGGAACTCAAACTCTCGGCCGTGTACATTTCAAAGTGAGAC
AAGCGTATTCCACACGATCGGAAAATGTAAAACATACCTGCAGTACGGGT
GTAGAAACGATCCACATTCTCATCTACTTTACAACCCATGCCAGAAGTGA
CT
Run BLAST on NCBI

transcript from alignment at sc0002302:5740..6291

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040080 ID=TCONS_00040080|Name=TCONS_00040080|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at sc0002302:5740..6291 (Clytia hemisphaerica)
AGTCACTTCTGGCATGGGTTGTAAAGTAGATGAGAATGTGGATCGTTTCT
ACACCCGTACTGCAGGTATGTTTTACATTTTCCGATCGTGTGGAATACGC
TTGTCTCACTTTGAAATGTACACGGCCGAGAGTTTGAGTTCCGTCTTTCT
GTGGCTTCTAGATGTTTTTGGAGAAATTCCATCTACGGACCAAATCAAAG
GAATTGTGTATGATGTGCTTGTGATTTACACCCGTTTTTCAAACGACTAA
GTTCGGAAGGTAATGAAATCGCTTCAAATTACATGAAACTTTTACATATG
GTAGATGTATTTCATGCTGAGAAACATACCATGCCAAAATGCGTTTTGAC
ATCTCCTGAATGCAAATACCACCCGTAGATTTGAATTTGTTGGTGATATG
AACACGGAAGTTGCCGGACAATCGTTTAATCGCTTAAATCCTTTTAAGTT
CATAACTCGAAAAACGACATACGCTCGACggcttttatttttcaaatttc
ttgacGATTCTTATAACAAGAGACtgtcttcaaaaatcgactttttaTAA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024298XLOC_024298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040080-exon-sc0002302-1491911889:5740..6291TCONS_00040080-exon-sc0002302-1491911889:5740..6291Clytia hemisphaericaexon
TCONS_00040080-exon-sc0002302-1510915933:5740..6291TCONS_00040080-exon-sc0002302-1510915933:5740..6291Clytia hemisphaericaexon
TCONS_00040080-exon-sc0002302-1575043694:5740..6291TCONS_00040080-exon-sc0002302-1575043694:5740..6291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002302supercontigsc0002302:5740..6291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103434	0	0	0	0.462285	0.33857	1.0554	1.55877	0.414278	0.947937	0.141049	0	0	0.396358	1.11758	0.378622	1.46676	0.672069	0	0.26786	0.568389	0.202976	0	0.209099	2.04487	0.964531	1.83843	0.328546	0.651022	0.825153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top