TCONS_00040054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040054
Unique NameTCONS_00040054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040054 ID=TCONS_00040054|Name=TCONS_00040054|organism=Clytia hemisphaerica|type=transcript|length=383bp
TTTctagttgttctttttttgttttgtgtctCAGGCCTATAATTTCGGAG
Aattagtaaataaatgaatttattttcggttcgcagataagaaaataaat
atattttatgctGTGAGGGTGCAGCAAGAATTTATGAGTAATGCTGTGAG
GGTGCAGTAAGAGATGACAATGCGAGGGTGCATTGAGTATTTCAGTAGAA
AGCTTCTATGTAAATAAAGACTCCTTTCGGGCACTTACAAAACGAAAACC
TTTGTCGAGTATACCGAGCGGATTTTTCGAGGCCCTTACGGTTTCCTCTA
CGACAGctcagcaaaaatttgagaCAGCCTGGGCACCCAATTTTGACCAC
CGGGGTCTGGAGGTTTTTGTCCGGGGGGACTTG
Run BLAST on NCBI

transcript from alignment at sc0002291:10987..11369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040054 ID=TCONS_00040054|Name=TCONS_00040054|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at sc0002291:10987..11369 (Clytia hemisphaerica)
CAAGTCCCCCCGGACAAAAACCTCCAGACCCCGGTGGTCAAAATTGGGTG
CCCAGGCTGtctcaaatttttgctgagCTGTCGTAGAGGAAACCGTAAGG
GCCTCGAAAAATCCGCTCGGTATACTCGACAAAGGTTTTCGTTTTGTAAG
TGCCCGAAAGGAGTCTTTATTTACATAGAAGCTTTCTACTGAAATACTCA
ATGCACCCTCGCATTGTCATCTCTTACTGCACCCTCACAGCATTACTCAT
AAATTCTTGCTGCACCCTCACagcataaaatatatttattttcttatctg
cgaaccgaaaataaattcatttatttactaatTCTCCGAAATTATAGGCC
TGagacacaaaacaaaaaaagaacaactagAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024274XLOC_024274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040054-exon-sc0002291-1491911889:10987..11369TCONS_00040054-exon-sc0002291-1491911889:10987..11369Clytia hemisphaericaexon
TCONS_00040054-exon-sc0002291-1510915933:10987..11369TCONS_00040054-exon-sc0002291-1510915933:10987..11369Clytia hemisphaericaexon
TCONS_00040054-exon-sc0002291-1575043694:10987..11369TCONS_00040054-exon-sc0002291-1575043694:10987..11369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002291supercontigsc0002291:10987..11369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21978	1.17331	0	1.10602	0	0	0.262139	0.245412	0.378674	0	0	0.517726	0.406813	0.33443	1.74023	1.19819	1.24869	0	0.216745	0.453616	0.44923	0.57694	1.81855	0.893842	0	0.195375	0.559161	0	4.96624	7.06557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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