TCONS_00040048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040048
Unique NameTCONS_00040048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040048 ID=TCONS_00040048|Name=TCONS_00040048|organism=Clytia hemisphaerica|type=transcript|length=847bp
AAAGTTGAGACATCGCAAATCTACATTTACTAAGTTTGGCCTGCAACTTA
TTCCCACGGAGTCTTGATAAAACGACGCGCAATTGTTTTAAATGGTCGCT
TGGGGACTTGGAATAGATGATCACATCATCTATATACAAAAGGAGAAACA
CCCACAGCTCTAGTGCGAAAACCTGCTCTGCAAGTCTTTCAAAACTAGCG
GCTGCGTTACATAGCCCCATTGGCATGCGCAAGTATTCAAAGAGGCCTTT
GTGCGTAACAAAAGCTGTCTTTGGAATACTTGCTTTTTCCATGGGAATTT
GATGGTATCCCGTTAGCAGGTCAAGAGTAGAGAATATCTTAGCGCCATTT
AAATGGTCTAAAATTTCCTCAATCTTTGGCAAGGGATGGGCATCCTTTTT
CGTAATCTTATTAAGTTTACGGTAATCAATGCAGACCCGCGTGCCACCAT
CGCTTTTTGGTACCATTACAATAGGGCTTGACCACGGAGAACTACTTTTC
TGAATGATCCTTTTTTTCAGCTGACTATCTAGCTCTTTTTCAAGGGTTTC
CTTTTGAGCGGGTGAAANTTTTCAGCTGACTATCTAGCTCTTTTTCAAGG
GTTTCCTTTTGAGCGGGTGAAAGACGATAAGGTTTCTGTCTTATCGGAAT
TTCATGTTCAGTAATAATTTTATGCTCCACTCTATCTGTTTGTCCCAAAG
GGTCATCTTTATCTGCAAGGACATCCTGGAATTCCCTTAAAATCTCGTCA
AGCTCCTTTCTCTGGGAATCAGTAAGTGGGTAAGGTTTATAGCATGCCTG
GGTCTTTGGGTATTTGATAATCGGCTCCTCTATGGTGTCTACTGGGG
Run BLAST on NCBI

protein sequence of TCONS_00040048-protein

>TCONS_00040048-protein ID=TCONS_00040048-protein|Name=TCONS_00040048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MVPKSDGGTRVCIDYRKLNKITKKDAHPLPKIEEILDHLNGAKIFSTLDL
LTGYHQIPMEKASIPKTAFVTHKGLFEYLRMPMGLCNAAASFERLAEQVF
ALELWVFLLLYIDDVIIYSKSPSDHLKQLRVVLSRLRGNKLQAKLSKCRF
AMSQL
Run BLAST on NCBI

transcript from alignment at sc0002288:14663..15509

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040048 ID=TCONS_00040048|Name=TCONS_00040048|organism=Clytia hemisphaerica|type=transcript|length=847bp|location=Sequence derived from alignment at sc0002288:14663..15509 (Clytia hemisphaerica)
CCCCAGTAGACACCATAGAGGAGCCGATTATCAAATACCCAAAGACCCAG
GCATGCTATAAACCTTACCCACTTACTGATTCCCAGAGAAAGGAGCTTGA
CGAGATTTTAAGGGAATTCCAGGATGTCCTTGCAGATAAAGATGACCCTT
TGGGACAAACAGATAGAGTGGAGCATAAAATTATTACTGAACATGAAATT
CCGATAAGACAGAAACCTTATCGTCTTTCACCCGCTCAAAAGGAAACCCT
TGAAAAAGAGCTAGATAGTCAGCTGAAAANTTTCACCCGCTCAAAAGGAA
ACCCTTGAAAAAGAGCTAGATAGTCAGCTGAAAAAAAGGATCATTCAGAA
AAGTAGTTCTCCGTGGTCAAGCCCTATTGTAATGGTACCAAAAAGCGATG
GTGGCACGCGGGTCTGCATTGATTACCGTAAACTTAATAAGATTACGAAA
AAGGATGCCCATCCCTTGCCAAAGATTGAGGAAATTTTAGACCATTTAAA
TGGCGCTAAGATATTCTCTACTCTTGACCTGCTAACGGGATACCATCAAA
TTCCCATGGAAAAAGCAAGTATTCCAAAGACAGCTTTTGTTACGCACAAA
GGCCTCTTTGAATACTTGCGCATGCCAATGGGGCTATGTAACGCAGCCGC
TAGTTTTGAAAGACTTGCAGAGCAGGTTTTCGCACTAGAGCTGTGGGTGT
TTCTCCTTTTGTATATAGATGATGTGATCATCTATTCCAAGTCCCCAAGC
GACCATTTAAAACAATTGCGCGTCGTTTTATCAAGACTCCGTGGGAATAA
GTTGCAGGCCAAACTTAGTAAATGTAGATTTGCGATGTCTCAACTTT

Coding sequence (CDS) from alignment at sc0002288:14663..15509

>TCONS_00040048 ID=TCONS_00040048|Name=TCONS_00040048|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0002288:14663..15509 (Clytia hemisphaerica)
ATGGTACCAAAAAGCGATGGTGGCACGCGGGTCTGCATTGATTACCGTAA
ACTTAATAAGATTACGAAAAAGGATGCCCATCCCTTGCCAAAGATTGAGG
AAATTTTAGACCATTTAAATGGCGCTAAGATATTCTCTACTCTTGACCTG
CTAACGGGATACCATCAAATTCCCATGGAAAAAGCAAGTATTCCAAAGAC
AGCTTTTGTTACGCACAAAGGCCTCTTTGAATACTTGCGCATGCCAATGG
GGCTATGTAACGCAGCCGCTAGTTTTGAAAGACTTGCAGAGCAGGTTTTC
GCACTAGAGCTGTGGGTGTTTCTCCTTTTGTATATAGATGATGTGATCAT
CTATTCCAAGTCCCCAAGCGACCATTTAAAACAATTGCGCGTCGTTTTAT
CAAGACTCCGTGGGAATAAGTTGCAGGCCAAACTTAGTAAATGTAGATTT
GCGATGTCTCAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024268XLOC_024268Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040048-proteinTCONS_00040048-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040048-exon-sc0002288-1491911889:14663..15509TCONS_00040048-exon-sc0002288-1491911889:14663..15509Clytia hemisphaericaexon
TCONS_00040048-exon-sc0002288-1510915933:14663..15509TCONS_00040048-exon-sc0002288-1510915933:14663..15509Clytia hemisphaericaexon
TCONS_00040048-exon-sc0002288-1575043694:14663..15509TCONS_00040048-exon-sc0002288-1575043694:14663..15509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002288supercontigsc0002288:14663..15509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.35157	0.507279	0.25893	0.0774037	0.841087	1.49321	1.9865	1.62108	0.423269	1.47807	0.243281	0.829658	0.793969	0.866001	0.655732	0.591163	0.530343	1.07787	0.337553	0.924491	0.897702	0.586603	0.148815	0.388884	2.2224	2.96714	0.658168	0.615751	0.570014	0.308407
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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