TCONS_00040042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040042
Unique NameTCONS_00040042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040042 ID=TCONS_00040042|Name=TCONS_00040042|organism=Clytia hemisphaerica|type=transcript|length=497bp
AGAATTCATTCCtaacgaaatttttaaaattatgttaCGTTATTTTGCTG
CTTATGGTTGTGAATTACATGACGTGTTTCCTAAAAGACGGCAACCAACT
GCCCAACCTaagaagaaaattagaaaagctaacaaaaatgTTCCACCTTC
AAAATCATTCATTTGGATAACATCAAAGAAAGTTTCTAGAAGGCTTTTTG
CCCCAGAAAGATTTGATGGAACAAACTATCTTGCCAAGCGTGTTTTTCGT
TGTAAGAAAATACAAGGAAGAAGACAAAAACTTGTGTATGATGGTAAGGC
AATCGTTGCCATTACTTCAGAAACACCCATTAAGATGGTTTTTGAATATA
AAACCAGCCAGATAATGATTGGGTTCACAATCCAACGATACAATGAAAAT
GGTGAAGCAATTGATTCGACGGTACAAGCACAGATAAACAGCGCAGAAAC
TAATTGAGAGTGTTTTTATACGTAGATTTATTCCTGGAAGCATTTTA
Run BLAST on NCBI

protein sequence of TCONS_00040042-protein

>TCONS_00040042-protein ID=TCONS_00040042-protein|Name=TCONS_00040042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
EFIPNEIFKIMLRYFAAYGCELHDVFPKRRQPTAQPKKKIRKANKNVPPS
KSFIWITSKKVSRRLFAPERFDGTNYLAKRVFRCKKIQGRRQKLVYDGKA
IVAITSETPIKMVFEYKTSQIMIGFTIQRYNENGEAIDSTVQAQINSAET
N
Run BLAST on NCBI

transcript from alignment at sc0002285:9154..9650

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040042 ID=TCONS_00040042|Name=TCONS_00040042|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0002285:9154..9650 (Clytia hemisphaerica)
TAAAATGCTTCCAGGAATAAATCTACGTATAAAAACACTCTCAATTAGTT
TCTGCGCTGTTTATCTGTGCTTGTACCGTCGAATCAATTGCTTCACCATT
TTCATTGTATCGTTGGATTGTGAACCCAATCATTATCTGGCTGGTTTTAT
ATTCAAAAACCATCTTAATGGGTGTTTCTGAAGTAATGGCAACGATTGCC
TTACCATCATACACAAGTTTTTGTCTTCTTCCTTGTATTTTCTTACAACG
AAAAACACGCTTGGCAAGATAGTTTGTTCCATCAAATCTTTCTGGGGCAA
AAAGCCTTCTAGAAACTTTCTTTGATGTTATCCAAATGAATGATTTTGAA
GGTGGAAcatttttgttagcttttctaattttcttcttAGGTTGGGCAGT
TGGTTGCCGTCTTTTAGGAAACACGTCATGTAATTCACAACCATAAGCAG
CAAAATAACGtaacataattttaaaaatttcgttaGGAATGAATTCT

Coding sequence (CDS) from alignment at sc0002285:9154..9650

>TCONS_00040042 ID=TCONS_00040042|Name=TCONS_00040042|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0002285:9154..9650 (Clytia hemisphaerica)
TCAATTAGTTTCTGCGCTGTTTATCTGTGCTTGTACCGTCGAATCAATTG
CTTCACCATTTTCATTGTATCGTTGGATTGTGAACCCAATCATTATCTGG
CTGGTTTTATATTCAAAAACCATCTTAATGGGTGTTTCTGAAGTAATGGC
AACGATTGCCTTACCATCATACACAAGTTTTTGTCTTCTTCCTTGTATTT
TCTTACAACGAAAAACACGCTTGGCAAGATAGTTTGTTCCATCAAATCTT
TCTGGGGCAAAAAGCCTTCTAGAAACTTTCTTTGATGTTATCCAAATGAA
TGATTTTGAAGGTGGAAcatttttgttagcttttctaattttcttcttAG
GTTGGGCAGTTGGTTGCCGTCTTTTAGGAAACACGTCATGTAATTCACAA
CCATAAGCAGCAAAATAACGtaacataattttaaaaatttcgttaGGAAT
GAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024262XLOC_024262Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040042-proteinTCONS_00040042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040042-exon-sc0002285-1491911889:9154..9650TCONS_00040042-exon-sc0002285-1491911889:9154..9650Clytia hemisphaericaexon
TCONS_00040042-exon-sc0002285-1510915933:9154..9650TCONS_00040042-exon-sc0002285-1510915933:9154..9650Clytia hemisphaericaexon
TCONS_00040042-exon-sc0002285-1575043694:9154..9650TCONS_00040042-exon-sc0002285-1575043694:9154..9650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002285supercontigsc0002285:9154..9650 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123187	1.32139	0	0	0	0.656367	0.316752	1.03789	0.311421	0.514327	0.124805	0.0820416	0.0819275	0.510495	0	0.0750664	0	0	0	0.27406	0	0.174284	0.42373	0.128411	0	0.118039	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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