TCONS_00040032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040032
Unique NameTCONS_00040032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040032 ID=TCONS_00040032|Name=TCONS_00040032|organism=Clytia hemisphaerica|type=transcript|length=1396bp
TTTCGATGTCGTGGGTATTACAATGTCCAAGAATTTTGTGCcacatttca
aggctttctcGTCGGTTTTGGGATGAATAAGATTTATAGAGGTAATATAG
ACGATTTCTCTCTTCGATTTGGAATACGGTAATATCTGGAGTAATGAGTT
CTGCATACTGTTCATAGAATCTCACTGATGCTCCGAATTTGGTTGCTGCT
CTAgcagaaaatatattttgggGGAATGAGGATATGTAGAGTACATCTCT
CAGTTGAACATTGACAGTTTCCCCTTCTTTCGTCACAAGTTTCACGATAA
CAGTTCCTCTCTTTAATGCAATGTTATTAACTCGACTTCCATCAGCAAGT
TCGATGTGGTGGTTTGCTGGGTTGAAGGTGGGGTCCTCCTCAATGAAGCC
ATCATCATGGTTAATTATATGGGTTCATATATAGCCATTATAGTGGCTCC
ACAGTCTACTAAAAAGTTCTCACCACTAGCATACGTGTTTCGGTTATCGC
TGGCtttaaaaatgaatgaaaacgaATGTTCATTACCGTCATTGCTGGGT
ACGGAAGCTGCAGTTTTGGAGTGGTCATGTCCCGCAATACCGCAATTGTA
ACAAGTGAACGTTTTTGAGTCTCTCGTTTTCAATACAGATTCTTTGGTAC
TCTTTTCGGTCGATGAACGAATTAACTCTATTTCCTCGAAATTTCTGAGG
GTTTGCTTGAANNNNNNNNNNNNNNNNNNNNNNNNCGTTTTCAATACAGA
TTCTTTGGTACTCTTTTCGGTCGATGAACGAATTAACTCTATTTCCTCGA
AATTTCTGAGGGTTTGCTTGAACTTGAGAAACGTATCAACTTTTTCTGAC
TGGGTGATAAGGGCGACAAAAGGTTTGTATTCGTCAGATAAACCTTTCAA
GACCATAGCAATTAACAAAGCATCACTTATCTGTTCATTAGCAGACCGCA
ATGACATGGCTGCTTTTTCTGCTCTCATAAGGTAATCTGTTATGTTCTCG
TTCTTTCCTTTTTGTAACGTTGTTAATTGGTTGTACAATATAATAACTCT
TGGTTTGCTATCACCAGCATAAAATTCTCGAAGAATCTTGAACGCCTTTC
GACCATTATCTTTTGCTTCCCTGATGACTAGNCAGTTGTTGGTTTGGttt
cattttgttgtttctttctACACGACTGGTTGGTATGGGATGATGATCTG
CAGGTACTACACCATTTCTTTTTTGGTTTACGGCATTCAAACGCTCTATG
TCCCGCAATACCGCAATTGTAACAAGTGAACGTTTTTGAGTCCCTCGTTT
TCAATACAGATTCTTTGGTACTCTTTTCGGTCGATGAACGAATTAACTCT
ATTTCCTCGAAATTTCTGAGGGTTTGCTTGAACTTGAGAAACGTAT
Run BLAST on NCBI

transcript from alignment at sc0002274:8215..9610-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040032 ID=TCONS_00040032|Name=TCONS_00040032|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at sc0002274:8215..9610- (Clytia hemisphaerica)
TTTCGATGTCGTGGGTATTACAATGTCCAAGAATTTTGTGCCACATTTCA
AGGCTTTCTCGTCGGTTTTGGGATGAATAAGATTTATAGAGGTAATATAG
ACGATTTCTCTCTTCGATTTGGAATACGGTAATATCTGGAGTAATGAGTT
CTGCATACTGTTCATAGAATCTCACTGATGCTCCGAATTTGGTTGCTGCT
CTAGCAGAAAATATATTTTGGGGGAATGAGGATATGTAGAGTACATCTCT
CAGTTGAACATTGACAGTTTCCCCTTCTTTCGTCACAAGTTTCACGATAA
CAGTTCCTCTCTTTAATGCAATGTTATTAACTCGACTTCCATCAGCAAGT
TCGATGTGGTGGTTTGCTGGGTTGAAGGTGGGGTCCTCCTCAATGAAGCC
ATCATCATGGTTAATTATATGGGTTCATATATAGCCATTATAGTGGCTCC
ACAGTCTACTAAAAAGTTCTCACCACTAGCATACGTGTTTCGGTTATCGC
TGGCTTTAAAAATGAATGAAAACGAATGTTCATTACCGTCATTGCTGGGT
ACGGAAGCTGCAGTTTTGGAGTGGTCATGTCCCGCAATACCGCAATTGTA
ACAAGTGAACGTTTTTGAGTCTCTCGTTTTCAATACAGATTCTTTGGTAC
TCTTTTCGGTCGATGAACGAATTAACTCTATTTCCTCGAAATTTCTGAGG
GTTTGCTTGAANNNNNNNNNNNNNNNNNNNNNNNNCGTTTTCAATACAGA
TTCTTTGGTACTCTTTTCGGTCGATGAACGAATTAACTCTATTTCCTCGA
AATTTCTGAGGGTTTGCTTGAACTTGAGAAACGTATCAACTTTTTCTGAC
TGGGTGATAAGGGCGACAAAAGGTTTGTATTCGTCAGATAAACCTTTCAA
GACCATAGCAATTAACAAAGCATCACTTATCTGTTCATTAGCAGACCGCA
ATGACATGGCTGCTTTTTCTGCTCTCATAAGGTAATCTGTTATGTTCTCG
TTCTTTCCTTTTTGTAACGTTGTTAATTGGTTGTACAATATAATAACTCT
TGGTTTGCTATCACCAGCATAAAATTCTCGAAGAATCTTGAACGCCTTTC
GACCATTATCTTTTGCTTCCCTGATGACTAGNCAGTTGTTGGTTTGGTTT
CATTTTGTTGTTTCTTTCTACACGACTGGTTGGTATGGGATGATGATCTG
CAGGTACTACACCATTTCTTTTTTGGTTTACGGCATTCAAACGCTCTATG
TCCCGCAATACCGCAATTGTAACAAGTGAACGTTTTTGAGTCCCTCGTTT
TCAATACAGATTCTTTGGTACTCTTTTCGGTCGATGAACGAATTAACTCT
ATTTCCTCGAAATTTCTGAGGGTTTGCTTGAACTTGAGAAACGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024253XLOC_024253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040032-exon-sc0002274-1575043694:8215..9610TCONS_00040032-exon-sc0002274-1575043694:8215..9610Clytia hemisphaericaexon
TCONS_00040032-exon-sc0002274-1510915933:8215..9610TCONS_00040032-exon-sc0002274-1510915933:8215..9610Clytia hemisphaericaexon
TCONS_00040032-exon-sc0002274-1491911889:8215..9610TCONS_00040032-exon-sc0002274-1491911889:8215..9610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002274supercontigsc0002274:8215..9610 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.83688	0.377415	1.48902	1.82097	15.3035	9.22497	8.9918	8.05689	2.55478	6.64263	6.38932	3.26592	5.37979	2.94045	2.54881	3.3057	1.34463	2.68016	2.19425	4.01821	1.74628	1.92656	1.1094	1.71359	4.13962	5.51127	3.51036	1.41593	2.02361	1.53183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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