TCONS_00040030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040030
Unique NameTCONS_00040030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040030 ID=TCONS_00040030|Name=TCONS_00040030|organism=Clytia hemisphaerica|type=transcript|length=639bp
ctagtttttccatccccactgaattttctggcttaaaaccaatggaattc
aaatctccagccatgaaaaatatggaaatgttaatccccatcgagttttt
gTCCGTTATCTTTACCCAAACTGGCcgaaaaatcccaccgggtccgTGAC
ATAAACCGCTCTTGACATAAAACCGAAGGTGATCAAATCCATAGAATATA
CAACTGCGCTGATAATTATTAAAGGTAAATAATATTTACAATAGTTGTAA
AAAATCTTTCCAATAATTATTCCCAACAAACAGCAGTAGCGTTCTCAGGG
GTGTCGGAAAGGTTTTTgttggagagcagattttttATGACAAAGTAATA
TCTATTCATAACATTAAAAGACAATTACTttgtaacaaaattttgttctc
ctacacaaattttcctACACCGCTGAGAACTCTACGGAGACCAGAAAATA
AATGACCGCAATTCCAGAGCTGGGATTGAGATTATTTCCccaaaaattca
gccaaaatttagtcccaaatttcaaaaatttatgaccctttcaggcagtc
gattttcgattttcgtaattttggaacccttgcAGACTCATTTGCCTAAG
TaactaaatatttctttttttcgcacccGATAGAGCCtt
Run BLAST on NCBI

transcript from alignment at sc0002273:22356..22994

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040030 ID=TCONS_00040030|Name=TCONS_00040030|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at sc0002273:22356..22994 (Clytia hemisphaerica)
aaGGCTCTATCgggtgcgaaaaaaagaaatatttagttACTTAGGCAAAT
GAGTCTgcaagggttccaaaattacgaaaatcgaaaatcgactgcctgaa
agggtcataaatttttgaaatttgggactaaattttggctgaatttttgg
GGAAATAATCTCAATCCCAGCTCTGGAATTGCGGTCATTTATTTTCTGGT
CTCCGTAGAGTTCTCAGCGGTGTaggaaaatttgtgtaggagaacaaaat
tttgttacaaAGTAATTGTCTTTTAATGTTATGAATAGATATTACTTTGT
CATaaaaaatctgctctccaacAAAAACCTTTCCGACACCCCTGAGAACG
CTACTGCTGTTTGTTGGGAATAATTATTGGAAAGATTTTTTACAACTATT
GTAAATATTATTTACCTTTAATAATTATCAGCGCAGTTGTATATTCTATG
GATTTGATCACCTTCGGTTTTATGTCAAGAGCGGTTTATGTCAcggaccc
ggtgggatttttcgGCCAGTTTGGGTAAAGATAACGGAcaaaaactcgat
ggggattaacatttccatatttttcatggctggagatttgaattccattg
gttttaagccagaaaattcagtggggatggaaaaactag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024251XLOC_024251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040030-exon-sc0002273-1491911889:22356..22994TCONS_00040030-exon-sc0002273-1491911889:22356..22994Clytia hemisphaericaexon
TCONS_00040030-exon-sc0002273-1510915933:22356..22994TCONS_00040030-exon-sc0002273-1510915933:22356..22994Clytia hemisphaericaexon
TCONS_00040030-exon-sc0002273-1575043694:22356..22994TCONS_00040030-exon-sc0002273-1575043694:22356..22994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002273supercontigsc0002273:22356..22994 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.112767	0	2.17604	1.95228	0	0.114009	0.139053	0.344479	0.08359	0	0.774286	0.421584	0.152853	0.448195	0.5236	1.25251	0	0.0917781	0	0.11673	0.192654	0	0.177167	0.158117	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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